Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014968

Physical Location & Seq

Genomic Coordinates Reverse (-)

20033307 .. 20036799

Gene Structure 3493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCCACCATAACTGAATCCACTGCTCTCTTTTCTCCTTCGTATCTCCTCCCGGCGATCACGTCAAGGCCGGGGGCTGTTTCCCTCTCCCTCCGCCACAGACCGGGTTTCCGGGGATTGAAGGTTCAATCGCCTCTGTATTCCTCCCTTGCTCCAAAAGTCTCGCGTCTTCCATCAACGCCCACCATTGTCTCTCAAGCGCACGACACCACCGCTCTTGACATTCCCACAGTTACCGAAGCAACATGGCAATCACTAGTCCTCAAAGCCGATGGCCCTGTCCTGGTTGAGTTTTGGGCTCCTTGGTGCGGGCCATGCCGCATGATCCATCCAGTTGTGGGTGAACTAGCACAGGAGTATGCTGGGAAACTTAACTGCTTTAGGTTAAGCACAGACAATAGTCCTTCAATTGCAACTCAATATGGAATTCGGAGCGTCCCAACCCTGATGATTTTCAACAAGGGTGAGAAACAGGACACGGTAATTGGTGCAGTACCTAAAACCATATTGACTGCAAGCATTGAGAAACATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010319 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0030234 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

179

Amino Acids

19.24

Weight (kDa)

9.1

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	77 - 175	1.5e-28	Thioredoxin
Thioredoxin_2	PF13098	92 - 172	5.2e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03680 AT4G03520
fragaria_vesca	FvH4_6g26180
prunus_persica	Prupe.3G137100_v2.0.a1 Prupe.3G137100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0126351
rosa_laevigata	RLG00000018902
rosa_multiflora	Rmu_sc0007825.1_g000009 Rmu_sc0022556.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117230
rosa_rugosa	Rorug02G0262800
rosa_samantha	Rh2AG319800 Rh2BG328100 Rh2CG307900 Rh2DG347700
rosa_wichuraiana	Rw2G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	215
AccII	CGCG	1 cut(s)	166
AciI	CCGC	4 cut(s)	94, 213, 309, 319
AclWI	GGATC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	426
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	4 cut(s)	103, 283, 308, 338
AgsI	TTSAA	4 cut(s)	121, 128, 408, 457
AhlI	ACTAGT	1 cut(s)	256
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	282
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
Alw26I	GTCTC	2 cut(s)	166, 196
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	4 cut(s)	3, 68, 274, 311
ApoI	RAATTY	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	275, 311
AsuC2I	CCSGG	4 cut(s)	53, 72, 105, 113
AsuHPI	GGTGA	2 cut(s)	353, 476
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	161
BccI	CCATC	3 cut(s)	181, 266, 336
BciT130I	CCWGG	1 cut(s)	284
BcnI	CCSGG	4 cut(s)	53, 72, 105, 113
BcoDI	GTCTC	2 cut(s)	166, 196
BcuI	ACTAGT	1 cut(s)	256
BfaI	CTAG	2 cut(s)	257, 347
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme1390I	CCNGG	5 cut(s)	53, 72, 105, 113, 284
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	275, 311
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	5 cut(s)	53, 72, 105, 113, 284
BoxI	GACNNNNGTC	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	180
BpuMI	CCSGG	4 cut(s)	53, 72, 105, 113
BsaJI	CCNNGG	3 cut(s)	71, 112, 302
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 283, 308, 338
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	3 cut(s)	71, 112, 302
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	4 cut(s)	103, 283, 308, 338
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	362
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	4 cut(s)	5, 70, 276, 313
BsiSI	CCGG	4 cut(s)	53, 71, 104, 112
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	4 cut(s)	103, 283, 308, 338
BsmAI	GTCTC	2 cut(s)	166, 196
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	4 cut(s)	5, 70, 276, 313
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	2 cut(s)	57, 324
BspACI	CCGC	4 cut(s)	94, 213, 309, 319
BspANI	GGCC	4 cut(s)	5, 70, 276, 313
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	319
BsrBI	CCGCTC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	71, 112, 302
BssMI	GATC	2 cut(s)	57, 324
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	232, 481
BstC8I	GCNNGC	2 cut(s)	311, 517
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	2 cut(s)	60, 327
BstMAI	GTCTC	2 cut(s)	166, 196
BstMBI	GATC	2 cut(s)	57, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	284
BstPAI	GACNNNNGTC	1 cut(s)	399
BstSCI	CCNGG	5 cut(s)	51, 70, 103, 111, 282
BstUI	CGCG	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	161
BsuRI	GGCC	4 cut(s)	5, 70, 276, 313
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	311, 517
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	275, 311
CseI	GACGC	2 cut(s)	155, 424
Csp6I	GTAC	1 cut(s)	494
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviAII	CATG	3 cut(s)	246, 315, 322
CviJI	RGCY	7 cut(s)	5, 70, 77, 269, 276, 299, 313
CviKI_1	RGCY	7 cut(s)	5, 70, 77, 269, 276, 299, 313
CviQI	GTAC	1 cut(s)	494
DpnI	GATC	2 cut(s)	59, 326
DpnII	GATC	2 cut(s)	57, 324
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	3 cut(s)	249, 318, 325
FaiI	YATR	7 cut(s)	11, 247, 316, 323, 360, 423, 506
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	3 cut(s)	245, 314, 321
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	1 cut(s)	315
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	2 cut(s)	257, 347
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	319
GsaI	CCCAGC	1 cut(s)	366
HaeIII	GGCC	4 cut(s)	5, 70, 276, 313
HapII	CCGG	4 cut(s)	53, 71, 104, 112
HgaI	GACGC	2 cut(s)	155, 424
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	3 cut(s)	249, 318, 325
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	4 cut(s)	53, 71, 104, 112
HphI	GGTGA	2 cut(s)	353, 476
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	1 cut(s)	432
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	344
HpyAV	CCTTC	3 cut(s)	48, 115, 414
HpyCH4III	ACNGT	2 cut(s)	232, 481
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	413, 491, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	3 cut(s)	249, 318, 325
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	57, 324
LmnI	GCTCC	3 cut(s)	157, 304, 432
MaeI	CTAG	2 cut(s)	257, 347
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	2 cut(s)	59, 326
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	2 cut(s)	57, 324
MboII	GAAGA	1 cut(s)	161
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	408, 426, 483
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	59, 95, 101, 144, 154, 272
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	372, 386
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	53, 71, 104, 112
MspR9I	CCNGG	5 cut(s)	53, 72, 105, 113, 284
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	315
NciI	CCSGG	4 cut(s)	53, 72, 105, 113
NdeII	GATC	2 cut(s)	57, 324
NlaIII	CATG	3 cut(s)	249, 318, 325
NlaIV	GGNNCC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	320
PshAI	GACNNNNGTC	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	275, 311
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	372, 386
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	2 cut(s)	57, 324
Sau96I	GGNCC	2 cut(s)	275, 311
ScrFI	CCNGG	5 cut(s)	53, 72, 105, 113, 284
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	4 cut(s)	65, 126, 386, 499
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
SpeI	ACTAGT	1 cut(s)	256
Sse9I	AATT	3 cut(s)	408, 426, 483
SsiI	CCGC	4 cut(s)	94, 213, 309, 319
SspMI	CTAG	2 cut(s)	257, 347
StyD4I	CCNGG	5 cut(s)	51, 70, 103, 111, 282
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	2 cut(s)	232, 481
TaiI	ACGT	1 cut(s)	65
TasI	AATT	3 cut(s)	408, 426, 483
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	372, 386
Tru9I	TTAA	2 cut(s)	372, 386
TscAI	CASTG	1 cut(s)	28
TspRI	CASTG	1 cut(s)	28
XapI	RAATTY	1 cut(s)	426
XspI	CTAG	2 cut(s)	257, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.