Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014968

Physical Location & Seq

Genomic Coordinates Reverse (-)

27696102 .. 27710167

Gene Structure 14066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0262800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2613 bp

ATGGAGTTTTCCAGCAGCATTGCAGATAATGTCTTGGTTGGGCTAGCTTCACATGCTTCCCAAGAGATCTCCTTGGCATGGAGTGCCCAACTTGAGCTCACCAAGCTCAACAACACCTTATCTGCCATCAAACCAGTGATCGAGGATGCAGAAAAGAAGCAAGTGAGAAATCCCCTAATCACTCGTTGGTTAGGAGATCTCAAAGATGTTTGTCATGACGTTGATGATGTCTTGGATGAATTGGACTTCCAAAAGTTGCGGTTGAAAGTGGAGGTCGACAATTGTGGAAAGATCAAAGGAAAGGTACGCCAATTTTTTTCCCGATGGAATCCAGTAGTGTTCAACTTCAAAATGGGACATAAAGTGAAAGAGATTAGAGAAAGACTAGTTGAAATTGCTAATGAAAAGAGACATTTTGCTCTCCTTAAGTTTGCTATAGCTGAAGATCCTCGTGCGCCCCAACAAGTGCACGATGACAGGAGGATGACTACCTCTAAAGTTGAGGCTTCAAATGTTATTGGAAGAGATGATGATAAAAAACAGATTATCAAGCATCTCTTGAATGGCACTGATTTCTCCAGTGAGGAGAATGTTTCTGTTGTTTCCATAATTGGGTTAGGAGGGTTGGGGAAAACAACACTTGCTAAATTGGTGTACAATGATTGCATGGTAGAAGAAAATTTTGAGATAAAGATGTGGATATGCGTCTCAGACAACTTTGATATTCAAACATTAATTCGAGGTATTACTAATGCTGCAAATGGACCAAAATGTGAGGATGAAAGTTTGGATCTTATGGAAAGAAAGTTGCAAGATACTCTTAGAGGTAAAAAAATTTTATTGGTGTTGGACGATATCTGGGATACAGGGTCGATTGGAGTAACAATTGAAAAATGGACTGATTTAAAAACTTTGTTAAATGTGGGAGCTAATGGAAGCAAAATCATTATAACAACACGAAATAAATCAGTTGCTTTACTTGTGAGTCCCTTATACATGCATTCTTTAGAAGGTCTTGCCCACAAAGATTGCATGTCCTTGTTCATCCAAAGGGCATTTAAAAGAGGAGAGGAGCAGCGCTATCAACATTTGATAGAAATTGGAGAGGATATTGTGAAAAAGTGTGGAGGTGTTCCTTTAGCAGTAGCTACTGTAGGGAGTATGCTCTATTTGAATAGAGAGCAACACCATTGGTTGCGTGTCAGAGATGATGACATGTGGAGTACAGGGAATCACAATATTTTACCTGCACTCAACTTGAGCTATGATGCACTGCCACAACACTTGAAACCATGTTTTGCATTTTGTTCACTTTTCCCAAAGCATTATGAATTCAAGAGTTCAATGTTGGTTCCAATGTGGATAGCACAAGGATACCTCAAAACATGTAAGAAAAATGAAGATTTAGAACATATGGGTATAGACTATATAAGGCAATTTTTCTCTAGATCTTTGTTTCAAGTGGAGATGGATTTAAAAACATTAATAATTTTTAAAATACATGATCTAGTTCATGATTTAGCAATTTTTGTGGCAAAAATAGAGTACTCCACAGTCAATTTTCATCCCTCTAGTGCTTTTGAAATGGTTCGACATGTGTCAATATCCAAAAGTGACTTGCTTGGACAAAAGGCACAAGTTCCCAATTTCATGTTCAAGTCAAAGAAATTGCGAACCATTCTAATTCCTGAAGATGGTTTGGTAAATCAACATTTTGTGAAGACATGCGTCTCGAGATTCAAATATATGCGGGTGCTACATCTCCGTGGGTCGCCTCTTGAGAAGCTACCAAGTTCCATTGGTAGTTTGTTTCATTTGAGATTCCTCAACTTGTCTTCTAATGGCAAGATAAAAAGGCTTCCCAATTCCATCAGTAAGCTGCTGAATTTGGAGACCTTGTACCTTGGGGGTTGCGACGCACTTGAGGAAATACCCAAAGACATAGGGAACCTGATCAACCTGCGAAGCTTGACGATAACAACACAGCAGTCGTATTTGCCCAAAGGATTTAGACGCCTCACCTTACTTCAATTTTTAGGTTTTTATGGATGTGTCAATCTTAAATCTTTGGGCGAAGAGATCAAATTCCTCACCAACCTTCGCTATTTGTGGATTGACAGGTGTAATAATTTGGAATCCTTGCCACCAAATATGAAACACATGACTGCTTTACATACTTTGGTTATCGATGATTGCAAGAAGCTTCAGGTGATGAGATCAGGGGAAGGTCCTCAAGGTCTTCAATCATTGGCCATCCAGAATTCAAGTTTGGAGGCTTTGCCCCCTTGGCTCATTGAAGATTCCGCAGACGCTCTACAAAGCATAGCACTTGTTAAATGTCATAATCTCACGGCACTTCCGGAGTTGATAAACTTCACATTCCTCGAGCAACTACGCATTGAAGAATGCTCCAAATTGTCGGCTTTTCCGCAAGAGTTGCATTGCCTTACTGAGTTGAGAGGATTGACGATTTCAGGGTGTCCTGAATTGAGCAAAAGCTGCAAAAGGCAATTAAAAGGTGAGGAGTGGTCAAAGATGGCACGTCAGGTGAAGATTACACTCGACGCTGATGATGAAGAAGACAAAGATGAAGGGACACCAACGATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010319 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0030234 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

870

Amino Acids

98.85

Weight (kDa)

7.32

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	11 - 93	6.2e-18	Rx N-terminal domain
NB-ARC	PF00931	176 - 355	9.5e-31	NB-ARC domain
WHD_DRP	PF23559	438 - 508	5.4e-19	Disease resistance protein Winged helix domain
LRR_14	PF23598	576 - 774	1.9e-26	Leucine-rich repeat region
LRR_RPS2	PF23247	695 - 827	3.5e-07	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_R13L1-DRL21	PF25019	742 - 803	8.5e-08	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03680 AT4G03520
fragaria_vesca	FvH4_6g26180
prunus_persica	Prupe.3G137100_v2.0.a1 Prupe.3G137100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0126351
rosa_laevigata	RLG00000018902
rosa_multiflora	Rmu_sc0007825.1_g000009 Rmu_sc0022556.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117230
rosa_rugosa	Rorug02G0262800
rosa_samantha	Rh2AG319800 Rh2BG328100 Rh2CG307900 Rh2DG347700
rosa_wichuraiana	Rw2G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	950
Acc36I	ACCTGC	2 cut(s)	1255, 1968
AccI	GTMKAC	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	2359
AciI	CCGC	4 cut(s)	259, 1750, 2304, 2429
AclWI	GGATC	2 cut(s)	440, 798
AcoI	YGGCCR	1 cut(s)	2250
AcsI	RAATTY	6 cut(s)	679, 834, 1331, 1885, 2084, 2260
AcuI	CTGAAG	3 cut(s)	462, 1710, 2189
AcyI	GRCGYC	1 cut(s)	2014
AfaI	GTAC	5 cut(s)	306, 656, 1225, 1547, 1901
AfeI	AGCGCT	1 cut(s)	1079
AfiI	CCNNNNNNNGG	3 cut(s)	78, 612, 1694
AflII	CTTAAG	1 cut(s)	425
AflIII	ACRYGT	3 cut(s)	1215, 1385, 1594
AhlI	ACTAGT	1 cut(s)	385
AjiI	CACGTC	1 cut(s)	2543
AjuI	GAANNNNNNNTTGG	4 cut(s)	1637, 1669, 2252, 2284
Alw21I	GWGCWC	2 cut(s)	99, 471
Alw26I	GTCTC	4 cut(s)	403, 712, 1735, 1886
Alw44I	GTGCAC	1 cut(s)	467
AlwI	GGATC	2 cut(s)	440, 798
Ama87I	CYCGRG	2 cut(s)	1732, 2384
Aor13HI	TCCGGA	1 cut(s)	2359
Aor51HI	AGCGCT	1 cut(s)	1079
AoxI	GGCC	1 cut(s)	2250
ApaLI	GTGCAC	1 cut(s)	467
ApeKI	GCWGC	5 cut(s)	15, 755, 1075, 1879, 2499
ApoI	RAATTY	6 cut(s)	679, 834, 1331, 1885, 2084, 2260
AseI	ATTAAT	2 cut(s)	734, 1484
Asp700I	GAANNNNTTC	1 cut(s)	1587
AspLEI	GCGC	2 cut(s)	457, 1080
AspS9I	GGNCC	2 cut(s)	764, 2228
AsuHPI	GGTGA	6 cut(s)	91, 2011, 2083, 2221, 2531, 2560
AsuNHI	GCTAGC	1 cut(s)	43
AvaI	CYCGRG	2 cut(s)	1732, 2384
AvaII	GGWCC	2 cut(s)	764, 2228
BaeGI	GKGCMC	2 cut(s)	88, 471
BalI	TGGCCA	1 cut(s)	2252
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	450
BbsI	GAAGAC	4 cut(s)	1727, 1827, 2231, 2586
Bbv12I	GWGCWC	2 cut(s)	99, 471
BbvI	GCAGC	5 cut(s)	27, 742, 1087, 1866, 2486
BccI	CCATC	7 cut(s)	134, 318, 1462, 1688, 1877, 2261, 2530
BceAI	ACGGC	1 cut(s)	2367
BciVI	GTATCC	2 cut(s)	856, 1367
BclI	TGATCA	1 cut(s)	1953
BcoDI	GTCTC	4 cut(s)	403, 712, 1735, 1886
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	5 cut(s)	44, 386, 1446, 1508, 1572
BfmI	CTRYAG	2 cut(s)	435, 1152
BfoI	RGCGCY	1 cut(s)	1081
BfrI	CTTAAG	1 cut(s)	425
BfuAI	ACCTGC	2 cut(s)	1255, 1968
BfuI	GTATCC	2 cut(s)	856, 1367
BglI	GCCNNNNNGGC	1 cut(s)	2287
BglII	AGATCT	3 cut(s)	66, 196, 1448
BisI	GCNGC	5 cut(s)	16, 756, 1076, 1880, 2500
BlsI	GCNGC	5 cut(s)	17, 757, 1077, 1881, 2501
BmcAI	AGTACT	1 cut(s)	1547
Bme18I	GGWCC	2 cut(s)	764, 2228
BmeT110I	CYCGRG	2 cut(s)	1732, 2384
BmgBI	CACGTC	1 cut(s)	2543
BmgT120I	GGNCC	2 cut(s)	764, 2228
BmiI	GGNNCC	2 cut(s)	1353, 1949
BmsI	GCATC	3 cut(s)	136, 562, 1258
BmtI	GCTAGC	1 cut(s)	47
BoxI	GACNNNNGTC	2 cut(s)	1597, 1727
BpiI	GAAGAC	4 cut(s)	1727, 1827, 2231, 2586
BpmI	CTGGAG	1 cut(s)	562
BpuEI	CTTGAG	5 cut(s)	113, 1279, 1799, 1943, 2217
Bsa29I	ATCGAT	1 cut(s)	2187
BsaHI	GRCGYC	1 cut(s)	2014
BsaI	GGTCTC	1 cut(s)	1886
BsaJI	CCNNGG	4 cut(s)	72, 1765, 1903, 2285
BsaWI	WCCGGW	1 cut(s)	2359
BsaXI	ACNNNNNCTCC	2 cut(s)	1883, 1913
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 612, 1694
Bse1I	ACTGG	3 cut(s)	134, 332, 579
Bse3DI	GCAATG	2 cut(s)	18, 2440
BseAI	TCCGGA	1 cut(s)	2359
BseCI	ATCGAT	1 cut(s)	2187
BseDI	CCNNGG	4 cut(s)	72, 1765, 1903, 2285
BseGI	GGATG	8 cut(s)	151, 241, 489, 784, 1044, 1564, 2054, 2253
BseLI	CCNNNNNNNGG	3 cut(s)	78, 612, 1694
BseMI	GCAATG	2 cut(s)	18, 2440
BseMII	CTCAG	2 cut(s)	723, 2442
BseNI	ACTGG	3 cut(s)	134, 332, 579
BseRI	GAGGAG	4 cut(s)	599, 1080, 1085, 2537
BseSI	GKGCMC	2 cut(s)	88, 471
BseXI	GCAGC	5 cut(s)	27, 742, 1087, 1866, 2486
BsgI	GTGCAG	1 cut(s)	1233
BshFI	GGCC	1 cut(s)	2252
BshVI	ATCGAT	1 cut(s)	2187
BsiHKAI	GWGCWC	2 cut(s)	99, 471
BsiHKCI	CYCGRG	2 cut(s)	1732, 2384
BsiSI	CCGG	1 cut(s)	2360
BslFI	GGGAC	3 cut(s)	369, 972, 2608
BslI	CCNNNNNNNGG	3 cut(s)	78, 612, 1694
BsmAI	GTCTC	4 cut(s)	403, 712, 1735, 1886
BsmBI	CGTCTC	2 cut(s)	712, 1735
BsmFI	GGGAC	3 cut(s)	369, 972, 2608
BsmI	GAATGC	2 cut(s)	1000, 2411
BsnI	GGCC	1 cut(s)	2252
Bso31I	GGTCTC	1 cut(s)	1886
BsoBI	CYCGRG	2 cut(s)	1732, 2384
Bsp1286I	GDGCHC	3 cut(s)	88, 99, 471
Bsp13I	TCCGGA	1 cut(s)	2359
Bsp1407I	TGTACA	1 cut(s)	654
BspACI	CCGC	4 cut(s)	259, 1750, 2304, 2429
BspANI	GGCC	1 cut(s)	2252
BspCNI	CTCAG	2 cut(s)	722, 2443
BspDI	ATCGAT	1 cut(s)	2187
BspEI	TCCGGA	1 cut(s)	2359
BspHI	TCATGA	2 cut(s)	214, 1513
BspLI	GGNNCC	2 cut(s)	1353, 1949
BspMI	ACCTGC	2 cut(s)	1255, 1968
BspOI	GCTAGC	1 cut(s)	47
BspPI	GGATC	2 cut(s)	440, 798
BspTI	CTTAAG	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	1886
BsrDI	GCAATG	2 cut(s)	18, 2440
BsrGI	TGTACA	1 cut(s)	654
BsrI	ACTGG	3 cut(s)	134, 332, 579
BssECI	CCNNGG	4 cut(s)	72, 1765, 1903, 2285
BssNI	GRCGYC	1 cut(s)	2014
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	3 cut(s)	72, 1903, 2285
Bst2BI	CACGAG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	1153, 1555
Bst6I	CTCTTC	2 cut(s)	517, 2070
BstACI	GRCGYC	1 cut(s)	2014
BstAFI	CTTAAG	1 cut(s)	425
BstAPI	GCANNNNNTGC	3 cut(s)	83, 2437, 2499
BstAUI	TGTACA	1 cut(s)	654
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	3 cut(s)	709, 821, 2451
BstDSI	CCRYGG	1 cut(s)	1765
BstF5I	GGATG	8 cut(s)	151, 241, 489, 784, 1044, 1564, 2054, 2253
BstH2I	RGCGCY	1 cut(s)	1081
BstHHI	GCGC	2 cut(s)	457, 1080
BstMAI	GTCTC	4 cut(s)	403, 712, 1735, 1886
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 83, 103, 2287, 2437, 2499
BstNSI	RCATGY	7 cut(s)	56, 1000, 1036, 1219, 1389, 1598, 1728
BstPAI	GACNNNNGTC	2 cut(s)	1597, 1727
BstSFI	CTRYAG	2 cut(s)	435, 1152
BstSLI	GKGCMC	2 cut(s)	88, 471
BstV1I	GCAGC	5 cut(s)	27, 742, 1087, 1866, 2486
BstV2I	GAAGAC	4 cut(s)	1727, 1827, 2231, 2586
BstX2I	RGATCY	5 cut(s)	66, 196, 445, 790, 1448
BstYI	RGATCY	5 cut(s)	66, 196, 445, 790, 1448
Bsu15I	ATCGAT	1 cut(s)	2187
BsuI	GTATCC	2 cut(s)	856, 1367
BsuRI	GGCC	1 cut(s)	2252
BsuTUI	ATCGAT	1 cut(s)	2187
BtgI	CCRYGG	1 cut(s)	1765
BtrI	CACGTC	1 cut(s)	2543
BtsCI	GGATG	8 cut(s)	151, 241, 489, 784, 1044, 1564, 2054, 2253
BtsI	GCAGTG	1 cut(s)	1271
BtsIMutI	CAGTG	4 cut(s)	141, 567, 586, 1271
BveI	ACCTGC	2 cut(s)	1255, 1968
Cac8I	GCNNGC	1 cut(s)	45
CciI	TCATGA	2 cut(s)	214, 1513
CfoI	GCGC	2 cut(s)	457, 1080
Cfr13I	GGNCC	2 cut(s)	764, 2228
ClaI	ATCGAT	1 cut(s)	2187
CseI	GACGC	6 cut(s)	694, 1717, 1925, 2022, 2318, 2573
Csp6I	GTAC	5 cut(s)	305, 655, 1224, 1546, 1900
CspCI	CAANNNNNGTGG	6 cut(s)	1010, 1045, 1266, 1301, 1512, 1547
CviQI	GTAC	5 cut(s)	305, 655, 1224, 1546, 1900
DdeI	CTNAG	3 cut(s)	709, 821, 2451
DraI	TTTAAA	4 cut(s)	906, 1060, 1476, 1495
EaeI	YGGCCR	1 cut(s)	2250
Eam1104I	CTCTTC	2 cut(s)	517, 2070
EarI	CTCTTC	2 cut(s)	517, 2070
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	3 cut(s)	72, 1903, 2285
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	1886
Eco32I	GATATC	1 cut(s)	856
Eco47I	GGWCC	2 cut(s)	764, 2228
Eco47III	AGCGCT	1 cut(s)	1079
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	3 cut(s)	462, 1710, 2189
Eco88I	CYCGRG	2 cut(s)	1732, 2384
EcoICRI	GAGCTC	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	2228
EcoRI	GAATTC	2 cut(s)	1331, 2260
EcoRV	GATATC	1 cut(s)	856
EcoT14I	CCWWGG	3 cut(s)	72, 1903, 2285
EcoT22I	ATGCAT	1 cut(s)	1002
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	3 cut(s)	72, 1903, 2285
Esp3I	CGTCTC	2 cut(s)	712, 1735
FalI	AAGNNNNNCTT	4 cut(s)	542, 574, 804, 836
FaqI	GGGAC	3 cut(s)	369, 972, 2608
FauI	CCCGC	1 cut(s)	1743
FauNDI	CATATG	1 cut(s)	1413
FbaI	TGATCA	1 cut(s)	1953
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	5 cut(s)	16, 756, 1076, 1880, 2500
FokI	GGATG	8 cut(s)	158, 248, 496, 791, 1031, 1551, 2061, 2240
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	5 cut(s)	16, 756, 1076, 1880, 2500
FspBI	CTAG	5 cut(s)	44, 386, 1446, 1508, 1572
GlaI	GCGC	2 cut(s)	456, 1079
GluI	GCNGC	5 cut(s)	16, 756, 1076, 1880, 2500
GsuI	CTGGAG	1 cut(s)	562
HaeII	RGCGCY	1 cut(s)	1081
HaeIII	GGCC	1 cut(s)	2252
HapII	CCGG	1 cut(s)	2360
HgaI	GACGC	6 cut(s)	694, 1717, 1925, 2022, 2318, 2573
HhaI	GCGC	2 cut(s)	457, 1080
Hin1I	GRCGYC	1 cut(s)	2014
Hin6I	GCGC	2 cut(s)	455, 1078
HinP1I	GCGC	2 cut(s)	455, 1078
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	2 cut(s)	1966, 2201
HinfI	GANTC	7 cut(s)	328, 985, 1231, 1737, 1821, 2135, 2300
HpaII	CCGG	1 cut(s)	2360
HphI	GGTGA	6 cut(s)	91, 2011, 2083, 2221, 2531, 2560
Hpy166II	GTNNAC	4 cut(s)	277, 469, 655, 1310
Hpy188I	TCNGA	2 cut(s)	712, 1205
Hpy8I	GTNNAC	4 cut(s)	277, 469, 655, 1310
Hpy99I	CGWCG	2 cut(s)	1919, 2567
HpyAV	CCTTC	4 cut(s)	1004, 2108, 2219, 2585
HpyCH4III	ACNGT	2 cut(s)	1153, 1555
HpyCH4IV	ACGT	2 cut(s)	219, 2542
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 83, 103, 2287, 2437, 2499
HpyF3I	CTNAG	3 cut(s)	709, 821, 2451
HpySE526I	ACGT	2 cut(s)	219, 2542
Hsp92I	GRCGYC	1 cut(s)	2014
HspAI	GCGC	2 cut(s)	455, 1078
Kpn2I	TCCGGA	1 cut(s)	2359
Ksp22I	TGATCA	1 cut(s)	1953
LmnI	GCTCC	3 cut(s)	926, 1072, 2414
Lsp1109I	GCAGC	5 cut(s)	27, 742, 1087, 1866, 2486
LweI	GCATC	3 cut(s)	136, 562, 1258
MaeI	CTAG	5 cut(s)	44, 386, 1446, 1508, 1572
MaeII	ACGT	2 cut(s)	219, 2542
MaeIII	GTNAC	2 cut(s)	880, 1613
MfeI	CAATTG	2 cut(s)	280, 885
MflI	RGATCY	5 cut(s)	66, 196, 445, 790, 1448
MhlI	GDGCHC	3 cut(s)	88, 99, 471
MlsI	TGGCCA	1 cut(s)	2252
MluNI	TGGCCA	1 cut(s)	2252
MlyI	GAGTC	1 cut(s)	994
MmeI	TCCRAC	1 cut(s)	828
Mox20I	TGGCCA	1 cut(s)	2252
Mph1103I	ATGCAT	1 cut(s)	1002
MroI	TCCGGA	1 cut(s)	2359
MroXI	GAANNNNTTC	1 cut(s)	1587
MscI	TGGCCA	1 cut(s)	2252
MslI	CAYNNNNRTG	1 cut(s)	1764
Msp20I	TGGCCA	1 cut(s)	2252
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	1 cut(s)	2360
MunI	CAATTG	2 cut(s)	280, 885
Mva1269I	GAATGC	2 cut(s)	1000, 2411
MwoI	GCNNNNNNNGC	6 cut(s)	53, 83, 103, 2287, 2437, 2499
NdeI	CATATG	1 cut(s)	1413
NheI	GCTAGC	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	1353, 1949
NmuCI	GTSAC	1 cut(s)	1613
NsiI	ATGCAT	1 cut(s)	1002
NspI	RCATGY	7 cut(s)	56, 1000, 1036, 1219, 1389, 1598, 1728
PaeR7I	CTCGAG	2 cut(s)	1732, 2384
PagI	TCATGA	2 cut(s)	214, 1513
PciI	ACATGT	3 cut(s)	1215, 1385, 1594
PctI	GAATGC	2 cut(s)	1000, 2411
PdmI	GAANNNNTTC	1 cut(s)	1587
PfeI	GAWTC	6 cut(s)	328, 1231, 1737, 1821, 2135, 2300
PkrI	GCNGC	5 cut(s)	17, 757, 1077, 1881, 2501
PleI	GAGTC	1 cut(s)	993
PpsI	GAGTC	1 cut(s)	993
PpuMI	RGGWCCY	1 cut(s)	2228
PscI	ACATGT	3 cut(s)	1215, 1385, 1594
PshAI	GACNNNNGTC	2 cut(s)	1597, 1727
PshBI	ATTAAT	2 cut(s)	734, 1484
PsiI	TTATAA	1 cut(s)	950
Psp124BI	GAGCTC	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	2228
PspN4I	GGNNCC	2 cut(s)	1353, 1949
PspPI	GGNCC	2 cut(s)	764, 2228
PspPPI	RGGWCCY	1 cut(s)	2228
PspXI	VCTCGAGB	1 cut(s)	2384
PsuI	RGATCY	5 cut(s)	66, 196, 445, 790, 1448
RsaI	GTAC	5 cut(s)	306, 656, 1225, 1547, 1901
RsaNI	GTAC	5 cut(s)	305, 655, 1224, 1546, 1900
RseI	CAYNNNNRTG	1 cut(s)	1764
SacI	GAGCTC	1 cut(s)	99
SalI	GTCGAC	1 cut(s)	275
SatI	GCNGC	5 cut(s)	16, 756, 1076, 1880, 2500
Sau96I	GGNCC	2 cut(s)	764, 2228
ScaI	AGTACT	1 cut(s)	1547
SchI	GAGTC	1 cut(s)	994
SduI	GDGCHC	3 cut(s)	88, 99, 471
SfaNI	GCATC	3 cut(s)	136, 562, 1258
SfcI	CTRYAG	2 cut(s)	435, 1152
Sfr274I	CTCGAG	2 cut(s)	1732, 2384
SinI	GGWCC	2 cut(s)	764, 2228
SlaI	CTCGAG	2 cut(s)	1732, 2384
SmiMI	CAYNNNNRTG	1 cut(s)	1764
SmlI	CTYRAG	8 cut(s)	92, 425, 1258, 1732, 1778, 1922, 2232, 2384
SmoI	CTYRAG	8 cut(s)	92, 425, 1258, 1732, 1778, 1922, 2232, 2384
SpeI	ACTAGT	1 cut(s)	385
SsiI	CCGC	4 cut(s)	259, 1750, 2304, 2429
SspI	AATATT	1 cut(s)	1240
SspMI	CTAG	5 cut(s)	44, 386, 1446, 1508, 1572
SstI	GAGCTC	1 cut(s)	99
StyI	CCWWGG	3 cut(s)	72, 1903, 2285
TaaI	ACNGT	2 cut(s)	1153, 1555
TaiI	ACGT	2 cut(s)	222, 2545
TaqI	TCGA	9 cut(s)	141, 276, 739, 872, 1591, 1733, 2187, 2385, 2562
TatI	WGTACW	3 cut(s)	654, 1223, 1545
TfiI	GAWTC	6 cut(s)	328, 1231, 1737, 1821, 2135, 2300
TscAI	CASTG	4 cut(s)	141, 574, 586, 1278
TseFI	GTSAC	1 cut(s)	1613
TseI	GCWGC	5 cut(s)	15, 755, 1075, 1879, 2499
Tsp45I	GTSAC	1 cut(s)	1613
TspGWI	ACGGA	1 cut(s)	1754
TspRI	CASTG	4 cut(s)	141, 574, 586, 1278
Vha464I	CTTAAG	1 cut(s)	425
VneI	GTGCAC	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	764, 2228
VspI	ATTAAT	2 cut(s)	734, 1484
XapI	RAATTY	6 cut(s)	679, 834, 1331, 1885, 2084, 2260
XbaI	TCTAGA	1 cut(s)	1445
XceI	RCATGY	7 cut(s)	56, 1000, 1036, 1219, 1389, 1598, 1728
XhoI	CTCGAG	2 cut(s)	1732, 2384
XmiI	GTMKAC	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	1587
XspI	CTAG	5 cut(s)	44, 386, 1446, 1508, 1572
ZrmI	AGTACT	1 cut(s)	1547
Zsp2I	ATGCAT	1 cut(s)	1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.