Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014968

Physical Location & Seq

Genomic Coordinates Forward (+)

44725345 .. 44728742

Gene Structure 3398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00117230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCGACCATAGCTGAATCCACCGCGCTCTATTCTTCTTCTCCGTCATATCTTCAGCCGGCGATCACGTCAAGGCCGTCTCTTTCCGTCTCTGTCCGCCGCAGACCGGGTGCTTTACCGGAATTCCGGGGCTTGAGGCTCCAATCGCCTTTATATTCCTCCATTACTCCAAAAGTCTCGCGTCGTCCATCAACGCCCGCCATTGTCTCTCAAGCGCAAAACACTACCGCTCTTGATATTCCCACAGTTACCGATACAACATGGCAATCACTAGTCCTCAAAGCCGATGGCCCTGTACTGGTTGAGTTTTGGGCTCCTTGGTGTGGGCCCTGCCGCATGATCCATCCAGTTGTAGGTGAACTAGCACAGGAGTATGCTGGGAAGCTTAACTGCTTTAGGTTAAGCACGGATGATAGTCCTTCAATTGCGACTCAATATGGAATTCGGAGCGTCCCAACCATGATTATATTCAACAAGGGTGAGAAAAAGGACACTGTAATTGGTGCCGTGCCTAAAACCACATTGACTGCAAGCATTGAGAAATATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010319 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0030234 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

183

Amino Acids

19.9

Weight (kDa)

9.4

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	82 - 180	1e-28	Thioredoxin
Thioredoxin_2	PF13098	97 - 177	2.2e-07	Thioredoxin-like domain
Thioredoxin_9	PF14595	103 - 173	4.1e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03680 AT4G03520
fragaria_vesca	FvH4_6g26180
prunus_persica	Prupe.3G137100_v2.0.a1 Prupe.3G137100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0126351
rosa_laevigata	RLG00000018902
rosa_multiflora	Rmu_sc0007825.1_g000009 Rmu_sc0022556.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117230
rosa_rugosa	Rorug02G0262800
rosa_samantha	Rh2AG319800 Rh2BG328100 Rh2CG307900 Rh2DG347700
rosa_wichuraiana	Rw2G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	503
AccBSI	CCGCTC	1 cut(s)	230
AccII	CGCG	2 cut(s)	26, 181
AciI	CCGC	6 cut(s)	24, 97, 100, 198, 228, 334
AclWI	GGATC	1 cut(s)	334
AcsI	RAATTY	2 cut(s)	122, 441
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	4 cut(s)	106, 298, 323, 353
AgsI	TTSAA	2 cut(s)	423, 472
AhlI	ACTAGT	1 cut(s)	271
AjiI	CACGTC	1 cut(s)	69
AluBI	AGCT	2 cut(s)	14, 385
AluI	AGCT	2 cut(s)	14, 385
Alw26I	GTCTC	4 cut(s)	84, 94, 181, 211
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	3 cut(s)	74, 289, 326
ApaI	GGGCCC	1 cut(s)	330
ApoI	RAATTY	2 cut(s)	122, 441
AspLEI	GCGC	2 cut(s)	28, 217
AspS9I	GGNCC	3 cut(s)	290, 326, 327
AsuC2I	CCSGG	2 cut(s)	108, 128
AsuHPI	GGTGA	2 cut(s)	368, 491
BaeGI	GKGCMC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	503
BanII	GRGCYC	2 cut(s)	316, 330
BccI	CCATC	3 cut(s)	196, 281, 351
BceAI	ACGGC	2 cut(s)	61, 491
BcnI	CCSGG	2 cut(s)	108, 128
BcoDI	GTCTC	4 cut(s)	84, 94, 181, 211
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	2 cut(s)	272, 362
BisI	GCNGC	2 cut(s)	100, 334
BlsI	GCNGC	2 cut(s)	101, 335
Bme1390I	CCNGG	2 cut(s)	108, 128
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	3 cut(s)	290, 326, 327
BmiI	GGNNCC	4 cut(s)	140, 315, 328, 505
BmrFI	CCNGG	2 cut(s)	108, 128
BpuEI	CTTGAG	2 cut(s)	154, 195
BpuMI	CCSGG	2 cut(s)	108, 128
BsaJI	CCNNGG	2 cut(s)	127, 317
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 298, 323, 353
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	303, 347
BseDI	CCNNGG	2 cut(s)	127, 317
BseGI	GGATG	2 cut(s)	343, 415
BseLI	CCNNNNNNNGG	4 cut(s)	106, 298, 323, 353
BseNI	ACTGG	2 cut(s)	303, 347
BseSI	GKGCMC	1 cut(s)	330
BseYI	CCCAGC	1 cut(s)	377
Bsh1236I	CGCG	2 cut(s)	26, 181
BshFI	GGCC	3 cut(s)	76, 291, 328
BshNI	GGYRCC	1 cut(s)	503
BsiSI	CCGG	4 cut(s)	59, 107, 119, 127
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	4 cut(s)	106, 298, 323, 353
BsmAI	GTCTC	4 cut(s)	84, 94, 181, 211
BsmBI	CGTCTC	2 cut(s)	84, 94
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	76, 291, 328
Bsp120I	GGGCCC	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	316, 330
Bsp143I	GATC	2 cut(s)	63, 339
BspACI	CCGC	6 cut(s)	24, 97, 100, 198, 228, 334
BspANI	GGCC	3 cut(s)	76, 291, 328
BspFNI	CGCG	2 cut(s)	26, 181
BspLI	GGNNCC	4 cut(s)	140, 315, 328, 505
BspPI	GGATC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	503
BsrBI	CCGCTC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	303, 347
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	127, 317
BssMI	GATC	2 cut(s)	63, 339
BssT1I	CCWWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	247, 496
BstC8I	GCNNGC	3 cut(s)	60, 198, 532
BstF5I	GGATG	2 cut(s)	343, 415
BstFNI	CGCG	2 cut(s)	26, 181
BstHHI	GCGC	2 cut(s)	28, 217
BstKTI	GATC	2 cut(s)	66, 342
BstMAI	GTCTC	4 cut(s)	84, 94, 181, 211
BstMBI	GATC	2 cut(s)	63, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 145
BstSCI	CCNGG	2 cut(s)	106, 126
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	2 cut(s)	26, 181
BsuRI	GGCC	3 cut(s)	76, 291, 328
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	343, 415
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	3 cut(s)	60, 198, 532
CfoI	GCGC	2 cut(s)	28, 217
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	290, 326, 327
CseI	GACGC	2 cut(s)	170, 439
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	3 cut(s)	261, 337, 460
CviQI	GTAC	1 cut(s)	296
DpnI	GATC	2 cut(s)	65, 341
DpnII	GATC	2 cut(s)	63, 339
EciI	GGCGGA	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	2 cut(s)	316, 330
Eco57I	CTGAAG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRI	GAATTC	2 cut(s)	122, 441
EcoT14I	CCWWGG	1 cut(s)	317
EcoT38I	GRGCYC	2 cut(s)	316, 330
ErhI	CCWWGG	1 cut(s)	317
Esp3I	CGTCTC	2 cut(s)	84, 94
FaeI	CATG	3 cut(s)	264, 340, 463
FaiI	YATR	9 cut(s)	11, 49, 154, 262, 338, 375, 438, 461, 467
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	3 cut(s)	260, 336, 459
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	100, 334
FokI	GGATG	2 cut(s)	330, 422
FriOI	GRGCYC	2 cut(s)	316, 330
Fsp4HI	GCNGC	2 cut(s)	100, 334
FspBI	CTAG	2 cut(s)	272, 362
GlaI	GCGC	2 cut(s)	27, 216
GluI	GCNGC	2 cut(s)	100, 334
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	76, 291, 328
HapII	CCGG	4 cut(s)	59, 107, 119, 127
HgaI	GACGC	2 cut(s)	170, 439
HhaI	GCGC	2 cut(s)	28, 217
Hin1II	CATG	3 cut(s)	264, 340, 463
Hin6I	GCGC	2 cut(s)	26, 215
HinP1I	GCGC	2 cut(s)	26, 215
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	2 cut(s)	17, 430
HpaII	CCGG	4 cut(s)	59, 107, 119, 127
HphI	GGTGA	2 cut(s)	368, 491
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	1 cut(s)	447
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	359
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	2 cut(s)	247, 496
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 145
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	264, 340, 463
HspAI	GCGC	2 cut(s)	26, 215
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	63, 339
LmnI	GCTCC	3 cut(s)	144, 319, 447
MaeI	CTAG	2 cut(s)	272, 362
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	65, 341
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	2 cut(s)	63, 339
MboII	GAAGA	3 cut(s)	27, 30, 44
MfeI	CAATTG	1 cut(s)	423
MhlI	GDGCHC	2 cut(s)	316, 330
MluCI	AATT	4 cut(s)	122, 423, 441, 498
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	3 cut(s)	129, 169, 287
MroNI	GCCGGC	1 cut(s)	58
MseI	TTAA	2 cut(s)	387, 401
MspI	CCGG	4 cut(s)	59, 107, 119, 127
MspR9I	CCNGG	2 cut(s)	108, 128
MunI	CAATTG	1 cut(s)	423
MvnI	CGCG	2 cut(s)	26, 181
MwoI	GCNNNNNNNGC	2 cut(s)	11, 145
NaeI	GCCGGC	1 cut(s)	60
NciI	CCSGG	2 cut(s)	108, 128
NdeII	GATC	2 cut(s)	63, 339
NgoMIV	GCCGGC	1 cut(s)	58
NlaIII	CATG	3 cut(s)	264, 340, 463
NlaIV	GGNNCC	4 cut(s)	140, 315, 328, 505
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PdiI	GCCGGC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	101, 335
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	377
PspN4I	GGNNCC	4 cut(s)	140, 315, 328, 505
PspOMI	GGGCCC	1 cut(s)	326
PspPI	GGNCC	3 cut(s)	290, 326, 327
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	387, 401
SatI	GCNGC	2 cut(s)	100, 334
Sau3AI	GATC	2 cut(s)	63, 339
Sau96I	GGNCC	3 cut(s)	290, 326, 327
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	2 cut(s)	108, 128
SduI	GDGCHC	2 cut(s)	316, 330
SetI	ASST	5 cut(s)	16, 71, 358, 387, 401
SmlI	CTYRAG	2 cut(s)	133, 210
SmoI	CTYRAG	2 cut(s)	133, 210
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	4 cut(s)	122, 423, 441, 498
SsiI	CCGC	6 cut(s)	24, 97, 100, 198, 228, 334
SspI	AATATT	1 cut(s)	545
SspMI	CTAG	2 cut(s)	272, 362
StyD4I	CCNGG	2 cut(s)	106, 126
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	247, 496
TaiI	ACGT	1 cut(s)	71
TasI	AATT	4 cut(s)	122, 423, 441, 498
TatI	WGTACW	1 cut(s)	295
TauI	GCSGC	2 cut(s)	102, 336
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	387, 401
Tru9I	TTAA	2 cut(s)	387, 401
TscAI	CASTG	1 cut(s)	499
TspGWI	ACGGA	3 cut(s)	33, 76, 422
TspRI	CASTG	1 cut(s)	499
XapI	RAATTY	2 cut(s)	122, 441
XspI	CTAG	2 cut(s)	272, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.