Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014968

Physical Location & Seq

Genomic Coordinates Reverse (-)

1562203 .. 1564204

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTGCTTTCACTTGTACCTCTCGTCCTCCGATTTCTCTCCGCTCCGAGACCAGAATCGTATCCTCATCACCATCGGCTTCTTCTCTCTCTTCTCGGCGGATGTTCGCCGTCTTACCGGAATCATCAGGTTTGAGAATCCGTCTTTCTCTCTCTCCGGCTTCGTTGACCTCGATTCATCAACCTAGGGTTTCTCGATTACGAAGAGCCGTCGTCTGTGAAGCTCAGGAAACTACTACCGATATTCAAGTGGTCAATGACTCGACATGGGACTCTCTAGTTCTTAAAGCAACTGGGCCTGTAGTTGTCGACTTTTGGGCACCATGGTGTGGACCTTGCAAGATGATTGATCCGCTTGTAAACGATCTAGCACAGCATTACACTGGGAAGATCAAGTTCTACAAATTAAACACTGATGAATCTCCTAATACTCCCGGCCAGTACGGAGTTAGAAGCATCCCAACGATCATGATCTTTGTCGGTGGCGAGAAGAAGGATACAATCATAGGTGCAGTGCCCAAAACCACACTCACATCTAGCCTCGACAAGTTCTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010319 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

186

Amino Acids

20.31

Weight (kDa)

9.35

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	82 - 182	4.6e-31	Thioredoxin
Thioredoxin_2	PF13098	99 - 179	1.7e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03680 AT4G03520
fragaria_vesca	FvH4_6g26180
prunus_persica	Prupe.3G137100_v2.0.a1 Prupe.3G137100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0126351
rosa_laevigata	RLG00000018902
rosa_multiflora	Rmu_sc0007825.1_g000009 Rmu_sc0022556.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117230
rosa_rugosa	Rorug02G0262800
rosa_samantha	Rh2AG319800 Rh2BG328100 Rh2CG307900 Rh2DG347700
rosa_wichuraiana	Rw2G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	3 cut(s)	43, 100, 353
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	436
AfaI	GTAC	2 cut(s)	19, 443
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	248
AleI	CACNNNNGTG	1 cut(s)	325
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	2 cut(s)	296, 436
ApeKI	GCWGC	1 cut(s)	5
AspA2I	CCTAGG	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	296, 332
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	332
AvrII	CCTAGG	1 cut(s)	185
BaeGI	GKGCMC	2 cut(s)	322, 519
BanI	GGYRCC	1 cut(s)	319
BccI	CCATC	1 cut(s)	82
BceAI	ACGGC	2 cut(s)	95, 194
BciVI	GTATCC	2 cut(s)	73, 490
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	4 cut(s)	186, 278, 368, 537
BfmI	CTRYAG	1 cut(s)	300
BfuI	GTATCC	2 cut(s)	73, 490
BisI	GCNGC	1 cut(s)	6
BlnI	CCTAGG	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	296, 332
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	435
BmrI	ACTGGG	2 cut(s)	303, 393
BmsI	GCATC	1 cut(s)	465
BmuI	ACTGGG	2 cut(s)	303, 393
Bpu10I	CCTNAGC	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	470
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	185, 323
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	3 cut(s)	298, 388, 439
Bse8I	GATNNNNATC	1 cut(s)	470
BseDI	CCNNGG	2 cut(s)	185, 323
BseGI	GGATG	2 cut(s)	108, 456
BseJI	GATNNNNATC	1 cut(s)	470
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	3 cut(s)	298, 388, 439
BseSI	GKGCMC	2 cut(s)	322, 519
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	2 cut(s)	298, 438
BshNI	GGYRCC	1 cut(s)	319
BsiSI	CCGG	3 cut(s)	119, 158, 435
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	298, 438
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	322, 519
Bsp143I	GATC	5 cut(s)	349, 364, 390, 465, 471
Bsp19I	CCATGG	1 cut(s)	323
BspACI	CCGC	3 cut(s)	43, 100, 353
BspANI	GGCC	2 cut(s)	298, 438
BspCNI	CTCAG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	45
BsrI	ACTGG	3 cut(s)	298, 388, 439
BssECI	CCNNGG	2 cut(s)	185, 323
BssMI	GATC	5 cut(s)	349, 364, 390, 465, 471
BssT1I	CCWWGG	2 cut(s)	185, 323
Bst6I	CTCTTC	2 cut(s)	97, 199
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	108, 456
BstKTI	GATC	5 cut(s)	352, 367, 393, 468, 474
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	5 cut(s)	349, 364, 390, 465, 471
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	300
BstSLI	GKGCMC	2 cut(s)	322, 519
BsuI	GTATCC	2 cut(s)	73, 490
BsuRI	GGCC	2 cut(s)	298, 438
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	108, 456
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	381, 411, 519
CciI	TCATGA	1 cut(s)	468
Cfr13I	GGNCC	2 cut(s)	296, 332
Csp6I	GTAC	2 cut(s)	18, 442
CviAII	CATG	4 cut(s)	267, 324, 469, 558
CviJI	RGCY	8 cut(s)	5, 80, 161, 209, 224, 298, 438, 540
CviKI_1	RGCY	8 cut(s)	5, 80, 161, 209, 224, 298, 438, 540
CviQI	GTAC	2 cut(s)	18, 442
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	5 cut(s)	351, 366, 392, 467, 473
DpnII	GATC	5 cut(s)	349, 364, 390, 465, 471
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	2 cut(s)	97, 199
EarI	CTCTTC	2 cut(s)	97, 199
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	185, 323
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	332
EcoT14I	CCWWGG	2 cut(s)	185, 323
ErhI	CCWWGG	2 cut(s)	185, 323
FaeI	CATG	4 cut(s)	270, 327, 472, 561
FaiI	YATR	5 cut(s)	268, 325, 470, 506, 559
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	4 cut(s)	266, 323, 468, 557
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	115, 443
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	4 cut(s)	186, 278, 368, 537
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	298, 438
HapII	CCGG	3 cut(s)	119, 158, 435
Hin1II	CATG	4 cut(s)	270, 327, 472, 561
HincII	GTYRAC	2 cut(s)	168, 310
HindII	GTYRAC	2 cut(s)	168, 310
HinfI	GANTC	7 cut(s)	57, 122, 138, 175, 260, 272, 419
HpaII	CCGG	3 cut(s)	119, 158, 435
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	4 cut(s)	168, 310, 332, 361
Hpy188I	TCNGA	2 cut(s)	33, 49
Hpy188III	TCNNGA	3 cut(s)	195, 227, 469
Hpy8I	GTNNAC	4 cut(s)	168, 310, 332, 361
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	487
HpyCH4V	TGCA	2 cut(s)	339, 512
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	270, 327, 472, 561
Kzo9I	GATC	5 cut(s)	349, 364, 390, 465, 471
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	50
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	4 cut(s)	186, 278, 368, 537
MalI	GATC	5 cut(s)	351, 366, 392, 467, 473
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	5 cut(s)	349, 364, 390, 465, 471
MboII	GAAGA	5 cut(s)	75, 84, 216, 400, 502
MhlI	GDGCHC	2 cut(s)	322, 519
MluCI	AATT	1 cut(s)	404
MlyI	GAGTC	2 cut(s)	254, 266
MnlI	CCTC	5 cut(s)	31, 39, 76, 181, 551
MseI	TTAA	2 cut(s)	285, 407
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	3 cut(s)	119, 158, 435
MspR9I	CCNGG	1 cut(s)	435
NciI	CCSGG	1 cut(s)	435
NcoI	CCATGG	1 cut(s)	323
NdeII	GATC	5 cut(s)	349, 364, 390, 465, 471
NlaIII	CATG	4 cut(s)	270, 327, 472, 561
NlaIV	GGNNCC	1 cut(s)	321
NmeAIII	GCCGAG	1 cut(s)	76
OliI	CACNNNNGTG	1 cut(s)	325
PagI	TCATGA	1 cut(s)	468
PciSI	GCTCTTC	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PfeI	GAWTC	5 cut(s)	57, 122, 138, 175, 419
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	254, 266
PpsI	GAGTC	2 cut(s)	254, 266
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	2 cut(s)	296, 332
RsaI	GTAC	2 cut(s)	19, 443
RsaNI	GTAC	2 cut(s)	18, 442
RseI	CAYNNNNRTG	1 cut(s)	325
SalI	GTCGAC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	285, 407
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	5 cut(s)	349, 364, 390, 465, 471
Sau96I	GGNCC	2 cut(s)	296, 332
SchI	GAGTC	2 cut(s)	254, 266
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	2 cut(s)	322, 519
SetI	ASST	7 cut(s)	23, 133, 173, 187, 226, 337, 511
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	325
Sse9I	AATT	1 cut(s)	404
SsiI	CCGC	3 cut(s)	43, 100, 353
SspMI	CTAG	4 cut(s)	186, 278, 368, 537
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	2 cut(s)	185, 323
TaqI	TCGA	5 cut(s)	173, 196, 263, 309, 543
TasI	AATT	1 cut(s)	404
TfiI	GAWTC	5 cut(s)	57, 122, 138, 175, 419
Tru1I	TTAA	2 cut(s)	285, 407
Tru9I	TTAA	2 cut(s)	285, 407
TscAI	CASTG	3 cut(s)	388, 418, 519
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	167, 432
TspGWI	ACGGA	2 cut(s)	131, 459
TspRI	CASTG	3 cut(s)	388, 418, 519
Van91I	CCANNNNNTGG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	332
XmaJI	CCTAGG	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	4 cut(s)	186, 278, 368, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.