AT1G05730

BEST Arabidopsis thaliana protein match is Eukaryotic protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013059
Physical Location & Seq
Forward (+)
1718555 .. 1720587
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05730.1

Sequence Viewer

Length: 450 bp
ATGGATCACATAGCGGCAGCGGAGGAGCAAATTGTAACGGAGAGGATTAGAAGAAAACTTGAAGAAGTTAATGCAACTGCTCAATCGCAACTCTCTCCTATTCAAGATCACATCAATTTCACCCTTCAGCAAGCCTATTTCAAATGTGCATACGAGTGCTTTGACAGAAATAGGAAGCAAGAGGAGATAGCCAACTGTGTTGAGCACTGCAGTGTTCCAGTTGTCAATGCTCAACAGCATTTCGAAGGCGAAATGTCTCAGTTTCAGGAAAGGATGAACAGATCTCTCATGGTCTGTCAAGACAAATTTGAGGCTGCAAAGCTCCATAAGAACAGGGGAGATGCCGCCAAAGCTATGGAGAGTTGTGTGAACACATCCATTGAGGATAGTCTCGATACATTGCCTCATATTGTGCAGAGAATGAAGACGTCATTCTCCATTGCCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF842

Protein Analysis

149

Amino Acids

17.12

Weight (kDa)

5.51

Isoelectric Point (pI)

64.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF842 PF05811 20 - 143 9.6e-40 Eukaryotic protein of unknown function (DUF842)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05730 AT1G05730 AT2G31725
fragaria_vesca FvH4_3g34590 FvH4_3g34590
malus_domestica MD04G1037100.v1.1
prunus_persica Prupe.1G185700_v2.0.a1
pyrus_communis pycom04g03020
rosa_chinensis RchiOBHm_Chr4g0405841
rosa_laevigata RLG00000008821
rosa_multiflora Rmu_sc0001200.1_g000015
rosa_roxburghii Rroxscaffold_5G00350400
rosa_rugosa Rorug04G0062500
rosa_samantha Rh4AG133900 Rh4BG129000 Rh4CG141700 Rh4DG128400
rosa_wichuraiana Rw4G010900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 431
AciI CCGC 3 cut(s) 14, 20, 345
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 428
AgsI TTSAA 3 cut(s) 62, 104, 142
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 2 cut(s) 322, 353
AluI AGCT 2 cut(s) 322, 353
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 2 cut(s) 261, 395
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 17, 314
ApoI RAATTY 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 29, 301
BcoDI GTCTC 2 cut(s) 261, 395
BfmI CTRYAG 1 cut(s) 208
BglII AGATCT 1 cut(s) 281
BisI GCNGC 4 cut(s) 15, 18, 315, 345
BlsI GCNGC 4 cut(s) 16, 19, 316, 346
BmsI GCATC 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 431
Bpu14I TTCGAA 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 2 cut(s) 398, 438
BseGI GGATG 2 cut(s) 279, 374
BseMI GCAATG 2 cut(s) 398, 438
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 2 cut(s) 38, 197
BseXI GCAGC 2 cut(s) 29, 301
BsgI GTGCAG 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 207
BsmAI GTCTC 2 cut(s) 261, 395
Bsp119I TTCGAA 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 4, 106, 281
BspACI CCGC 3 cut(s) 14, 20, 345
BspCNI CTCAG 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 212
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 243
BsrDI GCAATG 2 cut(s) 398, 438
BsrI ACTGG 1 cut(s) 218
BssMI GATC 3 cut(s) 4, 106, 281
BssNI GRCGYC 1 cut(s) 428
Bst4CI ACNGT 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 428
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 279, 374
BstKTI GATC 3 cut(s) 7, 109, 284
BstMAI GTCTC 2 cut(s) 261, 395
BstMBI GATC 3 cut(s) 4, 106, 281
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstSFI CTRYAG 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 29, 301
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 281
BstXI CCANNNNNNTGG 1 cut(s) 355
BstYI RGATCY 1 cut(s) 281
BtsCI GGATG 2 cut(s) 279, 374
BtsI GCAGTG 2 cut(s) 205, 217
BtsIMutI CAGTG 2 cut(s) 205, 217
Cac8I GCNNGC 1 cut(s) 132
CviAII CATG 1 cut(s) 289
CviJI RGCY 5 cut(s) 134, 191, 314, 322, 353
CviKI_1 RGCY 5 cut(s) 134, 191, 314, 322, 353
DdeI CTNAG 1 cut(s) 258
DpnI GATC 3 cut(s) 6, 108, 283
DpnII GATC 3 cut(s) 4, 106, 281
Eco57I CTGAAG 1 cut(s) 110
FaeI CATG 1 cut(s) 292
FaiI YATR 6 cut(s) 11, 151, 290, 327, 356, 408
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 4 cut(s) 15, 18, 315, 345
FokI GGATG 2 cut(s) 286, 361
Fsp4HI GCNGC 4 cut(s) 15, 18, 315, 345
GluI GCNGC 4 cut(s) 15, 18, 315, 345
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 1 cut(s) 292
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 370
Hpy188III TCNNGA 4 cut(s) 104, 266, 299, 392
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 2 cut(s) 134, 239
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 5 cut(s) 74, 149, 210, 317, 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 428
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 3 cut(s) 4, 106, 281
LmnI GCTCC 2 cut(s) 25, 327
LpnPI CCDG 3 cut(s) 231, 251, 319
Lsp1109I GCAGC 2 cut(s) 29, 301
LweI GCATC 1 cut(s) 331
MaeII ACGT 1 cut(s) 428
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 6, 108, 283
MboI GATC 3 cut(s) 4, 106, 281
MboII GAAGA 3 cut(s) 63, 74, 436
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 3 cut(s) 30, 115, 305
MnlI CCTC 6 cut(s) 16, 36, 175, 304, 376, 414
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 2 cut(s) 154, 210
MspA1I CMGCKG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 350
NdeII GATC 3 cut(s) 4, 106, 281
NlaIII CATG 1 cut(s) 292
NspV TTCGAA 1 cut(s) 243
OliI CACNNNNGTG 1 cut(s) 210
PkrI GCNGC 4 cut(s) 16, 19, 316, 346
PstI CTGCAG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 281
RseI CAYNNNNRTG 2 cut(s) 154, 210
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 4 cut(s) 15, 18, 315, 345
Sau3AI GATC 3 cut(s) 4, 106, 281
SduI GDGCHC 1 cut(s) 207
SetI ASST 3 cut(s) 324, 355, 431
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 154, 210
Sse9I AATT 3 cut(s) 30, 115, 305
SsiI CCGC 3 cut(s) 14, 20, 345
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 1 cut(s) 431
TaqI TCGA 2 cut(s) 243, 393
TasI AATT 3 cut(s) 30, 115, 305
TauI GCSGC 2 cut(s) 17, 347
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 2 cut(s) 212, 217
TseI GCWGC 2 cut(s) 17, 314
TspDTI ATGAA 2 cut(s) 290, 437
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 2 cut(s) 212, 217
XapI RAATTY 1 cut(s) 305
ZraI GACGTC 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.