MD04G1037100.v1.1

Eukaryotic protein of unknown function (DUF842)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0013059
Physical Location & Seq
Forward (+)
4126629 .. 4130360
3732 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1037100.v1.1.491

Sequence Viewer

Length: 450 bp
ATGAATCACATAGCAGCAATGGAAGAGCAATTGGTATCGGAGAGATTAAAGCAAAAGCTAAACGAAGTAAATGTCGCTGCCCAGACCCAACTCTCCACCATCCAAGACCATGTCAATTTCACCCTTCAGCAAGCGTACTTCAAGTGTGCGCACGAGTGTTTTGATAGGAGACGAAGTCAGCAAGACATAAGCAATTGTGTTGAAAATTGCAGTGTTCCTGTTGTCAGAGCTCAAGAGGGAGTTGAGAATGAGATGGCCAAGTTTCAAGAGAGGTTAAGTAGGGCACTGATGGTCTGTCAGGACAAGTTCGAAGCAGCTAAGCAACAAGGGGTCACAACCAATTCACTCAACAATTTGGAGTCATGTGTTGAACAGGCAACCCAAGATAGCATACAGACGCTGCCACATCTTGCCGAAAGACTGAAGGCTTCCTTCGGGATCAACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF842

Protein Analysis

150

Amino Acids

16.91

Weight (kDa)

5.72

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF842 PF05811 20 - 143 1.2e-37 Eukaryotic protein of unknown function (DUF842)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05730 AT1G05730 AT2G31725
fragaria_vesca FvH4_3g34590 FvH4_3g34590
malus_domestica MD04G1037100.v1.1
prunus_persica Prupe.1G185700_v2.0.a1
pyrus_communis pycom04g03020
rosa_chinensis RchiOBHm_Chr4g0405841
rosa_laevigata RLG00000008821
rosa_multiflora Rmu_sc0001200.1_g000015
rosa_roxburghii Rroxscaffold_5G00350400
rosa_rugosa Rorug04G0062500
rosa_samantha Rh4AG133900 Rh4BG129000 Rh4CG141700 Rh4DG128400
rosa_wichuraiana Rw4G010900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 150
AclWI GGATC 1 cut(s) 446
AcoI YGGCCR 1 cut(s) 255
AcuI CTGAAG 2 cut(s) 110, 443
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 4 cut(s) 142, 203, 266, 371
AluBI AGCT 3 cut(s) 58, 230, 317
AluI AGCT 3 cut(s) 58, 230, 317
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 1 cut(s) 446
AlwNI CAGNNNCTG 1 cut(s) 400
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 4 cut(s) 14, 77, 314, 400
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AspLEI GCGC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 309
BaeGI GKGCMC 1 cut(s) 286
BalI TGGCCA 1 cut(s) 257
BanII GRGCYC 1 cut(s) 232
BauI CACGAG 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 4 cut(s) 26, 64, 326, 387
BccI CCATC 3 cut(s) 107, 247, 283
BcoDI GTCTC 1 cut(s) 163
BisI GCNGC 4 cut(s) 15, 78, 315, 401
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 4 cut(s) 16, 79, 316, 402
Bpu1102I GCTNAGC 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 216
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bse3DI GCAATG 1 cut(s) 24
BseGI GGATG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 4 cut(s) 26, 64, 326, 387
BshFI GGCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 163
BsmBI CGTCTC 1 cut(s) 163
BsnI GGCC 1 cut(s) 257
Bsp119I TTCGAA 1 cut(s) 309
Bsp1286I GDGCHC 2 cut(s) 232, 286
Bsp143I GATC 1 cut(s) 438
Bsp1720I GCTNAGC 1 cut(s) 318
BspANI GGCC 1 cut(s) 257
BspPI GGATC 1 cut(s) 446
BspQI GCTCTTC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 24
BssMI GATC 1 cut(s) 438
BssSI CACGAG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 18
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 4 cut(s) 26, 64, 326, 387
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 217, 284
Cac8I GCNNGC 1 cut(s) 132
CaiI CAGNNNCTG 1 cut(s) 400
CfoI GCGC 1 cut(s) 151
CseI GACGC 1 cut(s) 406
Csp6I GTAC 1 cut(s) 136
CviAII CATG 2 cut(s) 110, 363
CviJI RGCY 5 cut(s) 58, 230, 257, 317, 428
CviKI_1 RGCY 5 cut(s) 58, 230, 257, 317, 428
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 318
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 110, 443
EcoICRI GAGCTC 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 232
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 2 cut(s) 113, 366
FaiI YATR 5 cut(s) 11, 111, 188, 364, 392
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FatI CATG 2 cut(s) 109, 362
Fnu4HI GCNGC 4 cut(s) 15, 78, 315, 401
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 4 cut(s) 15, 78, 315, 401
FspAI RTGCGCAY 1 cut(s) 150
FspI TGCGCA 1 cut(s) 150
GlaI GCGC 1 cut(s) 150
GluI GCNGC 4 cut(s) 15, 78, 315, 401
HaeIII GGCC 1 cut(s) 257
HgaI GACGC 1 cut(s) 406
HhaI GCGC 1 cut(s) 151
Hin1II CATG 2 cut(s) 113, 366
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 2 cut(s) 4, 359
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 40, 227
Hpy188III TCNNGA 4 cut(s) 233, 266, 299, 436
HpyAV CCTTC 3 cut(s) 134, 418, 442
HpyCH4V TGCA 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 318
Hsp92II CATG 2 cut(s) 113, 366
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 438
LguI GCTCTTC 1 cut(s) 18
LpnPI CCDG 4 cut(s) 95, 231, 284, 359
Lsp1109I GCAGC 4 cut(s) 26, 64, 326, 387
MaeIII GTNAC 1 cut(s) 331
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 1 cut(s) 35
MfeI CAATTG 2 cut(s) 29, 193
MhlI GDGCHC 2 cut(s) 232, 286
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 6 cut(s) 29, 115, 193, 205, 340, 352
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 2 cut(s) 229, 264
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
MseI TTAA 3 cut(s) 47, 275, 448
Msp20I TGGCCA 1 cut(s) 257
MunI CAATTG 2 cut(s) 29, 193
NdeII GATC 1 cut(s) 438
NlaIII CATG 2 cut(s) 113, 366
NmuCI GTSAC 1 cut(s) 331
NsbI TGCGCA 1 cut(s) 150
NspV TTCGAA 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 2 cut(s) 110, 174
PkrI GCNGC 4 cut(s) 16, 79, 316, 402
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Psp124BI GAGCTC 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 400
PsyI GACNNNGTC 2 cut(s) 110, 174
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SacI GAGCTC 1 cut(s) 232
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 47, 275, 448
SatI GCNGC 4 cut(s) 15, 78, 315, 401
Sau3AI GATC 1 cut(s) 438
SchI GAGTC 1 cut(s) 368
SduI GDGCHC 2 cut(s) 232, 286
SetI ASST 4 cut(s) 60, 232, 275, 319
SfuI TTCGAA 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 6 cut(s) 29, 115, 193, 205, 340, 352
SstI GAGCTC 1 cut(s) 232
TaqI TCGA 1 cut(s) 309
TasI AATT 6 cut(s) 29, 115, 193, 205, 340, 352
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 47, 275, 448
Tru9I TTAA 3 cut(s) 47, 275, 448
TscAI CASTG 2 cut(s) 217, 291
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 4 cut(s) 14, 77, 314, 400
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 217, 291
Tth111I GACNNNGTC 2 cut(s) 110, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.