AT2G31725

BEST Arabidopsis thaliana protein match is Eukaryotic protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013059
Physical Location & Seq
Reverse (-)
13486237 .. 13487507
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31725.1

Sequence Viewer

Length: 450 bp
ATGGATCACATCGCTGCGGCGGAAGAGCAAATCGTATCGGAGAGACTTCGAAGAAAGCTTGAAGAAGTTAATGTAGCTGCTCAGACTCAGCTTTCTCCTATCCAAGATCACATCAATTTCACCCTTCAGCAAGCTTATTTCAAATGTGCATATGAGTGCTTTGATAGAAGAAGAAAGCAAGAGGAGATAAGTAACTGCGTCGAGCACTGCAGTGTTCCCGTTGTCAAATCTCAACAGTATTTCGAGAACGAAATGGCTCAATTTCAGGAAAGATTGAACAGATCACTGGTGGTGTGTCAAGACAAGTTTGAGGCCTCAAAGCTCCAGAAGATAAGGCCTGAAGCGGTTAACGAGATGGAGAGTTGTGTGCACAAATCCATTGAGGAAAATCTCAATACATTACCACATATTGTGCAGAGAATGAAGACAGCATTTAACATAACCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF842

Protein Analysis

149

Amino Acids

17.49

Weight (kDa)

5.97

Isoelectric Point (pI)

75.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF842 PF05811 20 - 143 2.6e-40 Eukaryotic protein of unknown function (DUF842)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05730 AT1G05730 AT2G31725
fragaria_vesca FvH4_3g34590 FvH4_3g34590
malus_domestica MD04G1037100.v1.1
prunus_persica Prupe.1G185700_v2.0.a1
pyrus_communis pycom04g03020
rosa_chinensis RchiOBHm_Chr4g0405841
rosa_laevigata RLG00000008821
rosa_multiflora Rmu_sc0001200.1_g000015
rosa_roxburghii Rroxscaffold_5G00350400
rosa_rugosa Rorug04G0062500
rosa_samantha Rh4AG133900 Rh4BG129000 Rh4CG141700 Rh4DG128400
rosa_wichuraiana Rw4G010900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 17, 20, 344
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 2 cut(s) 110, 360
AgsI TTSAA 3 cut(s) 62, 142, 277
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 5 cut(s) 58, 77, 91, 134, 322
AluI AGCT 5 cut(s) 58, 77, 91, 134, 322
Alw21I GWGCWC 2 cut(s) 207, 372
Alw26I GTCTC 1 cut(s) 37
Alw44I GTGCAC 1 cut(s) 368
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 312, 335
ApaLI GTGCAC 1 cut(s) 368
ApeKI GCWGC 2 cut(s) 14, 77
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 2 cut(s) 207, 372
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 37
BfmI CTRYAG 1 cut(s) 208
BisI GCNGC 3 cut(s) 15, 18, 78
BlsI GCNGC 3 cut(s) 16, 19, 79
BpiI GAAGAC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 308
Bpu14I TTCGAA 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 95, 101
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 434
BshFI GGCC 2 cut(s) 314, 337
BsiHKAI GWGCWC 2 cut(s) 207, 372
BsmAI GTCTC 1 cut(s) 37
BsnI GGCC 2 cut(s) 314, 337
Bsp119I TTCGAA 1 cut(s) 49
Bsp1286I GDGCHC 2 cut(s) 207, 372
Bsp143I GATC 3 cut(s) 4, 106, 281
BspACI CCGC 3 cut(s) 17, 20, 344
BspANI GGCC 2 cut(s) 314, 337
BspCNI CTCAG 2 cut(s) 94, 100
BspMAI CTGCAG 1 cut(s) 212
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 49
BsrI ACTGG 1 cut(s) 291
BssMI GATC 3 cut(s) 4, 106, 281
Bst4CI ACNGT 1 cut(s) 237
Bst6I CTCTTC 1 cut(s) 18
BstBI TTCGAA 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 81, 87
BstKTI GATC 3 cut(s) 7, 109, 284
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 3 cut(s) 4, 106, 281
BstSFI CTRYAG 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 431
BsuRI GGCC 2 cut(s) 314, 337
BtsI GCAGTG 2 cut(s) 205, 217
BtsIMutI CAGTG 3 cut(s) 205, 217, 284
Cac8I GCNNGC 1 cut(s) 132
CseI GACGC 1 cut(s) 187
CviJI RGCY 8 cut(s) 58, 77, 91, 134, 257, 314, 322, 337
CviKI_1 RGCY 8 cut(s) 58, 77, 91, 134, 257, 314, 322, 337
DdeI CTNAG 2 cut(s) 81, 87
DpnI GATC 3 cut(s) 6, 108, 283
DpnII GATC 3 cut(s) 4, 106, 281
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EciI GGCGGA 1 cut(s) 35
Eco147I AGGCCT 2 cut(s) 314, 337
Eco57I CTGAAG 2 cut(s) 110, 360
FaiI YATR 4 cut(s) 151, 153, 408, 440
FauNDI CATATG 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 15, 18, 78
Fsp4HI GCNGC 3 cut(s) 15, 18, 78
GluI GCNGC 3 cut(s) 15, 18, 78
GsuI CTGGAG 1 cut(s) 308
HaeIII GGCC 2 cut(s) 314, 337
HgaI GACGC 1 cut(s) 187
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 2 cut(s) 56, 132
HinfI GANTC 1 cut(s) 85
HpaI GTTAAC 1 cut(s) 349
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 349, 370
Hpy188I TCNGA 2 cut(s) 40, 84
Hpy188III TCNNGA 4 cut(s) 244, 266, 299, 325
Hpy8I GTNNAC 2 cut(s) 349, 370
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4V TGCA 4 cut(s) 149, 210, 370, 415
HpyF3I CTNAG 2 cut(s) 81, 87
KspAI GTTAAC 1 cut(s) 349
Kzo9I GATC 3 cut(s) 4, 106, 281
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 4 cut(s) 251, 272, 338, 351
Lsp1109I GCAGC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 191
MalI GATC 3 cut(s) 6, 108, 283
MboI GATC 3 cut(s) 4, 106, 281
MboII GAAGA 7 cut(s) 35, 63, 74, 180, 183, 340, 436
MhlI GDGCHC 2 cut(s) 207, 372
MluCI AATT 2 cut(s) 115, 260
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 4 cut(s) 175, 304, 325, 376
MseI TTAA 3 cut(s) 69, 348, 435
MslI CAYNNNNRTG 2 cut(s) 154, 210
NdeI CATATG 1 cut(s) 151
NdeII GATC 3 cut(s) 4, 106, 281
NspV TTCGAA 1 cut(s) 49
OliI CACNNNNGTG 1 cut(s) 210
PceI AGGCCT 2 cut(s) 314, 337
PciSI GCTCTTC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 16, 19, 79
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PstI CTGCAG 1 cut(s) 212
RseI CAYNNNNRTG 2 cut(s) 154, 210
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 69, 348, 435
SatI GCNGC 3 cut(s) 15, 18, 78
Sau3AI GATC 3 cut(s) 4, 106, 281
SchI GAGTC 1 cut(s) 79
SduI GDGCHC 2 cut(s) 207, 372
SetI ASST 5 cut(s) 60, 79, 93, 136, 324
SfcI CTRYAG 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 49
SmiMI CAYNNNNRTG 2 cut(s) 154, 210
Sse9I AATT 2 cut(s) 115, 260
SseBI AGGCCT 2 cut(s) 314, 337
SsiI CCGC 3 cut(s) 17, 20, 344
StuI AGGCCT 2 cut(s) 314, 337
TaaI ACNGT 1 cut(s) 237
TaqI TCGA 3 cut(s) 49, 201, 243
TasI AATT 2 cut(s) 115, 260
TauI GCSGC 1 cut(s) 20
Tru1I TTAA 3 cut(s) 69, 348, 435
Tru9I TTAA 3 cut(s) 69, 348, 435
TscAI CASTG 3 cut(s) 212, 217, 291
TseI GCWGC 2 cut(s) 14, 77
TspDTI ATGAA 1 cut(s) 437
TspRI CASTG 3 cut(s) 212, 217, 291
VneI GTGCAC 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.