FvH4_3g34590

Eukaryotic protein of unknown function (DUF842)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013059
Physical Location & Seq
Reverse (-)
29966046 .. 29967219
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34590.t1

Sequence Viewer

Length: 432 bp
ATGGATGAACAAATGGTATCAGAAAGGGTTAGACAAAAGCTACAAGATGTGAATACTGCTGCCCAAAATTATCTCTCTCCGGTCCAAGACCATGTCAATTTCACTCTACAGCAAGCGTACTTTAAATGTGCATATGAGTGCTTCGATAGGAGAAGAAGCCAACAAGAGATCGGCAATTGCGTTGAAAATTGTAGTGTTCCTGTTGTTAGTGCGCAACAAAGAGTTGAGAATGAGATGGCCAAGTTTCAAGAAAGGTTGAGTAGGGCATTGATGGTCTGTCAAGACAAGTTTGATGCAGCGAAGCTTCAACAGGCCAAAACTAGTGCACTCAACGATTTGGAGTCATGTGTTCAACAAACAACAGAAGATGGGATAAAGATGCTTCCACTTCTTGCTGAACGATTGAAGTCTTCCTTTTCTATCAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF842

Protein Analysis

144

Amino Acids

16.39

Weight (kDa)

5.47

Isoelectric Point (pI)

63.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF842 PF05811 14 - 137 2.6e-38 Eukaryotic protein of unknown function (DUF842)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05730 AT1G05730 AT2G31725
fragaria_vesca FvH4_3g34590 FvH4_3g34590
malus_domestica MD04G1037100.v1.1
prunus_persica Prupe.1G185700_v2.0.a1
pyrus_communis pycom04g03020
rosa_chinensis RchiOBHm_Chr4g0405841
rosa_laevigata RLG00000008821
rosa_multiflora Rmu_sc0001200.1_g000015
rosa_roxburghii Rroxscaffold_5G00350400
rosa_rugosa Rorug04G0062500
rosa_samantha Rh4AG133900 Rh4BG129000 Rh4CG141700 Rh4DG128400
rosa_wichuraiana Rw4G010900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 237
AfaI GTAC 1 cut(s) 119
AgsI TTSAA 5 cut(s) 185, 248, 308, 353, 406
AhlI ACTAGT 1 cut(s) 320
AluBI AGCT 2 cut(s) 40, 304
AluI AGCT 2 cut(s) 40, 304
Alw21I GWGCWC 1 cut(s) 328
Alw44I GTGCAC 1 cut(s) 324
AoxI GGCC 2 cut(s) 237, 312
ApaLI GTGCAC 1 cut(s) 324
ApeKI GCWGC 2 cut(s) 59, 296
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 82
AvaII GGWCC 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 328
BalI TGGCCA 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 2 cut(s) 46, 308
BccI CCATC 3 cut(s) 229, 265, 362
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 107
BisI GCNGC 2 cut(s) 60, 297
BlsI GCNGC 2 cut(s) 61, 298
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmsI GCATC 2 cut(s) 283, 369
BpiI GAAGAC 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 79
BseGI GGATG 1 cut(s) 10
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 2 cut(s) 46, 308
BshFI GGCC 2 cut(s) 239, 314
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 80
BsnI GGCC 2 cut(s) 239, 314
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 1 cut(s) 168
BspANI GGCC 2 cut(s) 239, 314
BssMI GATC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 114
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 328
BstV1I GCAGC 2 cut(s) 46, 308
BstV2I GAAGAC 1 cut(s) 402
BsuRI GGCC 2 cut(s) 239, 314
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 118
CviAII CATG 2 cut(s) 92, 345
CviJI RGCY 5 cut(s) 40, 159, 239, 304, 314
CviKI_1 RGCY 5 cut(s) 40, 159, 239, 304, 314
CviQI GTAC 1 cut(s) 118
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
DraI TTTAAA 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 82
FaeI CATG 2 cut(s) 95, 348
FaiI YATR 4 cut(s) 93, 133, 135, 346
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FatI CATG 2 cut(s) 91, 344
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 60, 297
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 60, 297
FspBI CTAG 1 cut(s) 321
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 1 cut(s) 213
GluI GCNGC 2 cut(s) 60, 297
HaeIII GGCC 2 cut(s) 239, 314
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 214
Hin1II CATG 2 cut(s) 95, 348
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 1 cut(s) 341
HpaII CCGG 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 248, 281
Hpy8I GTNNAC 1 cut(s) 326
HpyCH4V TGCA 3 cut(s) 131, 296, 326
Hsp92II CATG 2 cut(s) 95, 348
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 1 cut(s) 168
LpnPI CCDG 3 cut(s) 93, 213, 296
Lsp1109I GCAGC 2 cut(s) 46, 308
LweI GCATC 2 cut(s) 283, 369
MaeI CTAG 1 cut(s) 321
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 3 cut(s) 165, 377, 402
MfeI CAATTG 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 328
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 5 cut(s) 67, 97, 175, 187, 427
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 1 cut(s) 350
Mox20I TGGCCA 1 cut(s) 239
MscI TGGCCA 1 cut(s) 239
MseI TTAA 2 cut(s) 123, 430
MslI CAYNNNNRTG 1 cut(s) 136
Msp20I TGGCCA 1 cut(s) 239
MspI CCGG 1 cut(s) 80
MunI CAATTG 1 cut(s) 175
NdeI CATATG 1 cut(s) 133
NdeII GATC 1 cut(s) 168
NlaIII CATG 2 cut(s) 95, 348
NsbI TGCGCA 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 61, 298
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 136
SaqAI TTAA 2 cut(s) 123, 430
SatI GCNGC 2 cut(s) 60, 297
Sau3AI GATC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 350
SduI GDGCHC 1 cut(s) 328
SetI ASST 3 cut(s) 42, 257, 306
SfaNI GCATC 2 cut(s) 283, 369
SfcI CTRYAG 1 cut(s) 107
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 136
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 5 cut(s) 67, 97, 175, 187, 427
SspMI CTAG 1 cut(s) 321
TaqI TCGA 1 cut(s) 144
TasI AATT 5 cut(s) 67, 97, 175, 187, 427
Tru1I TTAA 2 cut(s) 123, 430
Tru9I TTAA 2 cut(s) 123, 430
TseI GCWGC 2 cut(s) 59, 296
TspDTI ATGAA 1 cut(s) 21
Tth111I GACNNNGTC 1 cut(s) 92
VneI GTGCAC 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 82
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.