Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001200.1

Orthogroup ID

OG0013059

Physical Location & Seq

Genomic Coordinates Forward (+)

114435 .. 117261

Gene Structure 2827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001200.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggatcacctggcagcgatggaagagcaattggtatcagagagggttaaacaaaggctacaagacgtgaatgcggctgcccaaaagtatctctctccggtccaagaccatgtcaatttcaccctccagcaagcatactttaaatgtgcatacgagtgttttgataggaggagaagcgaacaagagattgccaattgcgttgaaaattgtagcgttcctgttgttagtgctcaacagagagttgagaatgagatggccaagtttcaagaaaggttgagtagggcactgatggtctgtcaagacaagtttgatgcagctaagcttcaacaggtcaaaactagtgcactcaatgatttggagtcatgtgttcaacaaacgaccgaagatggaataaagacacttccacttcttgctgaaagattgaagtcttccttttcgatcaacaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF842

Protein Analysis

149

Amino Acids

17.02

Weight (kDa)

5.45

Isoelectric Point (pI)

62.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05730 AT1G05730 AT2G31725
fragaria_vesca	FvH4_3g34590 FvH4_3g34590
malus_domestica	MD04G1037100.v1.1
prunus_persica	Prupe.1G185700_v2.0.a1
pyrus_communis	pycom04g03020
rosa_chinensis	RchiOBHm_Chr4g0405841
rosa_laevigata	RLG00000008821
rosa_multiflora	Rmu_sc0001200.1_g000015
rosa_roxburghii	Rroxscaffold_5G00350400
rosa_rugosa	Rorug04G0062500
rosa_samantha	Rh4AG133900 Rh4BG129000 Rh4CG141700 Rh4DG128400
rosa_wichuraiana	Rw4G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	255
AgsI	TTSAA	5 cut(s)	203, 266, 326, 371, 424
AhlI	ACTAGT	1 cut(s)	338
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	2 cut(s)	317, 322
AluI	AGCT	2 cut(s)	317, 322
Alw21I	GWGCWC	2 cut(s)	232, 346
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	255
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	3 cut(s)	14, 77, 314
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	2 cut(s)	286, 346
BalI	TGGCCA	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	232, 346
BbvI	GCAGC	3 cut(s)	26, 64, 326
BccI	CCATC	4 cut(s)	13, 247, 283, 380
BciT130I	CCWGG	1 cut(s)	11
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	1 cut(s)	339
BisI	GCNGC	4 cut(s)	15, 75, 78, 315
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	4 cut(s)	16, 76, 79, 316
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	100
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	184
BseSI	GKGCMC	2 cut(s)	286, 346
BseXI	GCAGC	3 cut(s)	26, 64, 326
Bsh1285I	CGRYCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	232, 346
BsiSI	CCGG	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	3 cut(s)	232, 286, 346
Bsp143I	GATC	2 cut(s)	4, 438
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	18
BssMI	GATC	2 cut(s)	4, 438
Bst2UI	CCWGG	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	318
BstKTI	GATC	2 cut(s)	7, 441
BstMBI	GATC	2 cut(s)	4, 438
BstMCI	CGRYCG	1 cut(s)	381
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstSLI	GKGCMC	2 cut(s)	286, 346
BstV1I	GCAGC	3 cut(s)	26, 64, 326
BstV2I	GAAGAC	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	257
BtgZI	GCGATG	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	100
CviAII	CATG	2 cut(s)	110, 363
CviJI	RGCY	5 cut(s)	58, 77, 257, 317, 322
CviKI_1	RGCY	5 cut(s)	58, 77, 257, 317, 322
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	2 cut(s)	6, 440
DpnII	GATC	2 cut(s)	4, 438
DraI	TTTAAA	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	9
FaeI	CATG	2 cut(s)	113, 366
FaiI	YATR	4 cut(s)	111, 136, 151, 364
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FatI	CATG	2 cut(s)	109, 362
Fnu4HI	GCNGC	4 cut(s)	15, 75, 78, 315
Fsp4HI	GCNGC	4 cut(s)	15, 75, 78, 315
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	4 cut(s)	15, 75, 78, 315
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	2 cut(s)	113, 366
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	266, 299
Hpy8I	GTNNAC	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	149, 314, 344
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	113, 366
Kzo9I	GATC	2 cut(s)	4, 438
LguI	GCTCTTC	1 cut(s)	18
LpnPI	CCDG	5 cut(s)	23, 111, 140, 231, 314
Lsp1109I	GCAGC	3 cut(s)	26, 64, 326
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	66
MalI	GATC	2 cut(s)	6, 440
MboI	GATC	2 cut(s)	4, 438
MboII	GAAGA	3 cut(s)	35, 395, 420
MfeI	CAATTG	2 cut(s)	29, 193
MhlI	GDGCHC	3 cut(s)	232, 286, 346
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	5 cut(s)	29, 115, 193, 205, 445
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	3 cut(s)	36, 134, 162
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	3 cut(s)	48, 141, 448
MslI	CAYNNNNRTG	1 cut(s)	154
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	11
MunI	CAATTG	2 cut(s)	29, 193
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	11
NdeII	GATC	2 cut(s)	4, 438
NlaIII	CATG	2 cut(s)	113, 366
PciSI	GCTCTTC	1 cut(s)	18
PctI	GAATGC	1 cut(s)	76
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	16, 76, 79, 316
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	100
PsyI	GACNNNGTC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	3 cut(s)	48, 141, 448
SatI	GCNGC	4 cut(s)	15, 75, 78, 315
Sau3AI	GATC	2 cut(s)	4, 438
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	3 cut(s)	232, 286, 346
SetI	ASST	6 cut(s)	12, 69, 275, 319, 324, 333
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	154
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	5 cut(s)	29, 115, 193, 205, 445
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	9
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	437
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	5 cut(s)	29, 115, 193, 205, 445
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	3 cut(s)	48, 141, 448
Tru9I	TTAA	3 cut(s)	48, 141, 448
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	3 cut(s)	14, 77, 314
TspRI	CASTG	1 cut(s)	291
Tth111I	GACNNNGTC	1 cut(s)	110
VneI	GTGCAC	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	100
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.