Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013129

Physical Location & Seq

Genomic Coordinates Forward (+)

2047634 .. 2049439

Gene Structure 1806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGTACAGTGCGTGTTTCCTACACCAGAGCGCATTGGCTTCATCAGCCGCACGATCATCATCTTCCTCCTCATCCCAGCGTCACGTGTCGCTCTCCAAACCTGTTCAGATCATCTGTAAAGCTCAACAGTCTCATGAAGACGATAACTCCGCCGTCTCCCGCCGTCTTGCTCTCACTCTCCTCGTCGGCGCCGCTGCTGTTGGTTCCAAAGTATCTCCTGCTGATGCCGCCTACGGTGAAGCTGCAAACGTGTTTGGGAAGCCAAAGACGAACACAGACTTCTTGCCATACAATGGAGATGGGTTCAAAGTGCAGGTTCCAGCAAAATGGAACCCAAGCAAAGAGATTGAGTATCCAGGACAAGTCCTTAGGTTCGAAGACAACTTCGATGCTACTAGCAATCTCAATGTCATGGTCACTCCTACCGACAAGAAGTCCATCACTGATTACGGTTCTCCCGAAGAGTTCCTCTCTCAGGTTAATTACCTCCTAGGGAAACAAGCTTACTTCGGTGAGACTGCCTCTGAGGGAGGCTTTGACAACAATGCAGTGGCAACAGCAAACATTCTGGAGTCATCATCTCAGGAAGTTGGTGGGAAACCCTACTATTACTTGTCTGTGTTGACAAGAACGGCTGATGGAGACGAAGGTGGGAAGCATCAGCTGATCACAGCAACCGTGAATGGAGGGAAGCTTTACATCTGCAAAGCACAAGCTGGAGACAAGAGGTGGTTCAAGGGAGCCAGGAAATTTGTCGAGAGCGCAGCCACTTCTTTCAGTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0019898 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

263

Amino Acids

28.09

Weight (kDa)

6.9

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	94 - 262	6.7e-39	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06680 AT1G06680
fragaria_vesca	FvH4_6g38900
malus_domestica	MD09G1146300.v1.1 MD17G1132900.v1.1
prunus_persica	Prupe.3G179400_v2.0.a1
pyrus_communis	pycom09g06660 pycom17g12650
rosa_chinensis	RchiOBHm_Chr2g0152481
rosa_laevigata	RLG00000020637
rosa_multiflora	Rmu_co8478837.1_g000001 Rmu_sc0005366.1_g000010
rosa_roxburghii	Rroxscaffold_2G00095680
rosa_rugosa	Rorug02G0433100
rosa_samantha	Rh2AG494900 Rh2BG507100 Rh2DG518300
rosa_wichuraiana	Rw2G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	296
AciI	CCGC	5 cut(s)	51, 153, 163, 195, 231
AcsI	RAATTY	1 cut(s)	752
AcvI	CACGTG	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	296, 478
AflIII	ACRYGT	2 cut(s)	87, 252
AgsI	TTSAA	2 cut(s)	310, 739
AhdI	GACNNNNNGTC	1 cut(s)	436
AjnI	CCWGG	2 cut(s)	358, 746
AluBI	AGCT	6 cut(s)	125, 245, 506, 667, 697, 719
AluI	AGCT	6 cut(s)	125, 245, 506, 667, 697, 719
Alw26I	GTCTC	5 cut(s)	138, 163, 512, 639, 717
ApeKI	GCWGC	3 cut(s)	197, 245, 767
ApoI	RAATTY	1 cut(s)	752
AspA2I	CCTAGG	1 cut(s)	493
AspLEI	GCGC	3 cut(s)	35, 194, 767
AsuHPI	GGTGA	2 cut(s)	251, 527
AsuII	TTCGAA	1 cut(s)	378
AvrII	CCTAGG	1 cut(s)	493
AxyI	CCTNAGG	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	191
BbrPI	CACGTG	1 cut(s)	88
BbsI	GAAGAC	2 cut(s)	147, 387
BbvI	GCAGC	3 cut(s)	184, 232, 779
BccI	CCATC	3 cut(s)	296, 449, 635
BceAI	ACGGC	3 cut(s)	140, 150, 651
BciT130I	CCWGG	2 cut(s)	360, 748
BciVI	GTATCC	1 cut(s)	366
BclI	TGATCA	1 cut(s)	669
BcoDI	GTCTC	5 cut(s)	138, 163, 512, 639, 717
BfaI	CTAG	2 cut(s)	399, 494
BfoI	RGCGCY	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	307
BfuI	GTATCC	1 cut(s)	366
BisI	GCNGC	6 cut(s)	51, 195, 198, 231, 246, 768
BlnI	CCTAGG	1 cut(s)	493
BlsI	GCNGC	6 cut(s)	52, 196, 199, 232, 247, 769
Bme1390I	CCNGG	2 cut(s)	360, 748
BmeRI	GACNNNNNGTC	1 cut(s)	436
BmiI	GGNNCC	5 cut(s)	193, 208, 321, 335, 745
BmrFI	CCNGG	2 cut(s)	360, 748
BmsI	GCATC	3 cut(s)	217, 382, 670
BpiI	GAAGAC	2 cut(s)	147, 387
BplI	GAGNNNNNCTC	4 cut(s)	458, 490, 509, 541
BpmI	CTGGAG	2 cut(s)	593, 741
Bpu14I	TTCGAA	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 478
Bse21I	CCTNAGG	1 cut(s)	371
Bse8I	GATNNNNATC	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	360, 748
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	1 cut(s)	74
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	296, 478
BseMII	CTCAG	3 cut(s)	491, 519, 599
BseRI	GAGGAG	2 cut(s)	61, 173
BseXI	GCAGC	3 cut(s)	184, 232, 779
BseYI	CCCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	296, 478
BsmAI	GTCTC	5 cut(s)	138, 163, 512, 639, 717
BsmBI	CGTCTC	2 cut(s)	163, 639
Bsp119I	TTCGAA	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	56, 111, 669
BspACI	CCGC	5 cut(s)	51, 153, 163, 195, 231
BspCNI	CTCAG	3 cut(s)	490, 520, 598
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	5 cut(s)	193, 208, 321, 335, 745
BspMI	ACCTGC	1 cut(s)	307
BspT104I	TTCGAA	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	3 cut(s)	56, 111, 669
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	2 cut(s)	360, 748
Bst4CI	ACNGT	5 cut(s)	11, 132, 239, 455, 682
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	378
BstDEI	CTNAG	4 cut(s)	371, 477, 528, 585
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstF5I	GGATG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	3 cut(s)	35, 194, 767
BstKTI	GATC	3 cut(s)	59, 114, 672
BstMAI	GTCTC	5 cut(s)	138, 163, 512, 639, 717
BstMBI	GATC	3 cut(s)	56, 111, 669
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 47, 230
BstNI	CCWGG	2 cut(s)	360, 748
BstSCI	CCNGG	2 cut(s)	358, 746
BstV1I	GCAGC	3 cut(s)	184, 232, 779
BstV2I	GAAGAC	2 cut(s)	147, 387
BstXI	CCANNNNNNTGG	1 cut(s)	330
Bsu36I	CCTNAGG	1 cut(s)	371
BsuI	GTATCC	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	4 cut(s)	16, 444, 558, 787
BveI	ACCTGC	1 cut(s)	307
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	3 cut(s)	35, 194, 767
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	137, 415
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	4 cut(s)	371, 477, 528, 585
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	3 cut(s)	58, 113, 671
DpnII	GATC	3 cut(s)	56, 111, 669
DriI	GACNNNNNGTC	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	459
Eam1105I	GACNNNNNGTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	459
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	493
Eco72I	CACGTG	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	371
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoRII	CCWGG	2 cut(s)	358, 746
EcoT14I	CCWWGG	1 cut(s)	493
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	493
Esp3I	CGTCTC	2 cut(s)	163, 639
FaeI	CATG	2 cut(s)	140, 418
FaiI	YATR	3 cut(s)	138, 292, 416
FatI	CATG	2 cut(s)	136, 414
FauI	CCCGC	1 cut(s)	170
FbaI	TGATCA	1 cut(s)	669
Fnu4HI	GCNGC	6 cut(s)	51, 195, 198, 231, 246, 768
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	6 cut(s)	51, 195, 198, 231, 246, 768
FspBI	CTAG	2 cut(s)	399, 494
GlaI	GCGC	3 cut(s)	34, 193, 766
GluI	GCNGC	6 cut(s)	51, 195, 198, 231, 246, 768
GsaI	CCCAGC	1 cut(s)	82
GsuI	CTGGAG	2 cut(s)	593, 741
HaeII	RGCGCY	1 cut(s)	195
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	3 cut(s)	35, 194, 767
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	140, 418
Hin6I	GCGC	3 cut(s)	33, 192, 765
HinP1I	GCGC	3 cut(s)	33, 192, 765
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HindIII	AAGCTT	2 cut(s)	504, 695
HinfI	GANTC	1 cut(s)	575
HphI	GGTGA	2 cut(s)	251, 527
Hpy166II	GTNNAC	1 cut(s)	627
Hpy188I	TCNGA	2 cut(s)	111, 529
Hpy188III	TCNNGA	5 cut(s)	137, 461, 572, 587, 760
Hpy8I	GTNNAC	1 cut(s)	627
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	5 cut(s)	11, 132, 239, 455, 682
HpyCH4IV	ACGT	2 cut(s)	87, 252
HpyCH4V	TGCA	4 cut(s)	248, 316, 551, 708
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 47, 230
HpyF3I	CTNAG	4 cut(s)	371, 477, 528, 585
HpySE526I	ACGT	2 cut(s)	87, 252
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	140, 418
HspAI	GCGC	3 cut(s)	33, 192, 765
KasI	GGCGCC	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	3 cut(s)	56, 111, 669
LmnI	GCTCC	1 cut(s)	743
Lsp1109I	GCAGC	3 cut(s)	184, 232, 779
LweI	GCATC	3 cut(s)	217, 382, 670
MaeI	CTAG	2 cut(s)	399, 494
MaeII	ACGT	2 cut(s)	87, 252
MaeIII	GTNAC	2 cut(s)	83, 418
MalI	GATC	3 cut(s)	58, 113, 671
MboI	GATC	3 cut(s)	56, 111, 669
MboII	GAAGA	4 cut(s)	57, 152, 392, 476
MluCI	AATT	2 cut(s)	484, 752
Mly113I	GGCGCC	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	584
MseI	TTAA	1 cut(s)	483
MspA1I	CMGCKG	2 cut(s)	197, 667
MspR9I	CCNGG	2 cut(s)	360, 748
MvaI	CCWGG	2 cut(s)	360, 748
MwoI	GCNNNNNNNGC	3 cut(s)	11, 47, 230
NarI	GGCGCC	1 cut(s)	192
NdeII	GATC	3 cut(s)	56, 111, 669
NlaIII	CATG	2 cut(s)	140, 418
NlaIV	GGNNCC	5 cut(s)	193, 208, 321, 335, 745
NmuCI	GTSAC	2 cut(s)	83, 418
NspV	TTCGAA	1 cut(s)	378
PagI	TCATGA	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PflMI	CCANNNNNTGG	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	358
PkrI	GCNGC	6 cut(s)	52, 196, 199, 232, 247, 769
PleI	GAGTC	1 cut(s)	583
PluTI	GGCGCC	1 cut(s)	195
PmaCI	CACGTG	1 cut(s)	88
PmlI	CACGTG	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	583
Ppu21I	YACGTR	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	358, 746
PspCI	CACGTG	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	2 cut(s)	358, 746
PspN4I	GGNNCC	5 cut(s)	193, 208, 321, 335, 745
PvuII	CAGCTG	1 cut(s)	667
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	6 cut(s)	51, 195, 198, 231, 246, 768
Sau3AI	GATC	3 cut(s)	56, 111, 669
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	2 cut(s)	360, 748
SfaNI	GCATC	3 cut(s)	217, 382, 670
SfoI	GGCGCC	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	378
Sse9I	AATT	2 cut(s)	484, 752
SsiI	CCGC	5 cut(s)	51, 153, 163, 195, 231
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	2 cut(s)	399, 494
StyD4I	CCNGG	2 cut(s)	358, 746
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	5 cut(s)	11, 132, 239, 455, 682
TaiI	ACGT	2 cut(s)	90, 255
TaqI	TCGA	3 cut(s)	378, 390, 759
TasI	AATT	2 cut(s)	484, 752
TauI	GCSGC	3 cut(s)	53, 197, 233
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	4 cut(s)	16, 451, 558, 787
TseFI	GTSAC	2 cut(s)	83, 418
TseI	GCWGC	3 cut(s)	197, 245, 767
Tsp45I	GTSAC	2 cut(s)	83, 418
TspDTI	ATGAA	2 cut(s)	33, 153
TspRI	CASTG	4 cut(s)	16, 451, 558, 787
Van91I	CCANNNNNTGG	1 cut(s)	296
XagI	CCTNNNNNAGG	1 cut(s)	476
XapI	RAATTY	1 cut(s)	752
XmaJI	CCTAGG	1 cut(s)	493
XspI	CTAG	2 cut(s)	399, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.