Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013129

Physical Location & Seq

Genomic Coordinates Reverse (-)

71251844 .. 71254101

Gene Structure 2258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG507100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCTCGACTGCATGCTTTTTGCACCACCATGCACTCACTACTTCAACTGCCGCTAGGTCTTCCTCGTCGCAGCGCCAAGTGGTGAGCATCAAGCCTAACCAGGTTGTGATCTGCAGGGCCCAGAAGCAGTCTGCCCAGGAGGAAGACGGCGGTGCTGTCTCTCGCCGTTTGGCTCTTACCCTCCTCATCGGTGGCGCTGCTCTTAGCACTAAGGTTGCACCTGCTGATGCAGCTTATGGAGAATCCGCCAATGTTTTCGGAAAGCCGAAGACAAACACAGAGTTCTTGACATATGCTGGAGAAGGGTTCAAGCTGTCGATCCCTGCAAAATGGAATCCCAGCAAAGAGGTGGAATATCCGGGTCAAGTTCTGAGATACGAGGACAACTTCGACGTTACCAGCAACTTGACTGTCACAATCAACCCAACTGATAAGAAGTCTATCACTGACTTTGGGAGCCCTGAACAATTCCTCAACCAGGTGGACTATTTGCTAGGCAAACAAGCCTACTTTGGGAAGACTGATTCTGAGGGAGGTTTCGACTCAGGTGCTGTGGCCACAGCCAACATATTGGAATCTGCAACTCAGACAATTGATGGGAAACCATACTACTTCATCTCTGTGTTGACAAGGACAGCTGATGGAGATGAAGGTGGTAAGCACCAACTGATCACTGCCACCGTGAAGGACGGCAAGCTTTACATCTGCAAGGCCCAAGCCGGAGACAAGAGGTGGTTCAAGGGAGCAAAGAAGTTCGTGGAGAACACTGTAACCTCTTTCAGTGTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0019898 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

264

Amino Acids

28.4

Weight (kDa)

8.29

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	96 - 263	1.9e-38	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06680 AT1G06680
fragaria_vesca	FvH4_6g38900
malus_domestica	MD09G1146300.v1.1 MD17G1132900.v1.1
prunus_persica	Prupe.3G179400_v2.0.a1
pyrus_communis	pycom09g06660 pycom17g12650
rosa_chinensis	RchiOBHm_Chr2g0152481
rosa_laevigata	RLG00000020637
rosa_multiflora	Rmu_co8478837.1_g000001 Rmu_sc0005366.1_g000010
rosa_roxburghii	Rroxscaffold_2G00095680
rosa_rugosa	Rorug02G0433100
rosa_samantha	Rh2AG494900 Rh2BG507100 Rh2DG518300
rosa_wichuraiana	Rw2G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
Acc36I	ACCTGC	1 cut(s)	232
AciI	CCGC	3 cut(s)	54, 153, 249
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	558
AfiI	CCNNNNNNNGG	2 cut(s)	481, 516
AgsI	TTSAA	3 cut(s)	48, 313, 742
AjnI	CCWGG	3 cut(s)	102, 138, 480
AluBI	AGCT	4 cut(s)	236, 316, 641, 700
AluI	AGCT	4 cut(s)	236, 316, 641, 700
Alw26I	GTCTC	2 cut(s)	166, 720
AlwI	GGATC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	4 cut(s)	3, 120, 558, 714
ApaI	GGGCCC	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	73, 200, 233
AspLEI	GCGC	2 cut(s)	78, 200
AspS9I	GGNCC	3 cut(s)	120, 121, 715
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	560
BanII	GRGCYC	2 cut(s)	124, 464
BbsI	GAAGAC	4 cut(s)	54, 153, 278, 527
BbvI	GCAGC	3 cut(s)	85, 187, 245
BccI	CCATC	2 cut(s)	593, 638
BceAI	ACGGC	3 cut(s)	153, 166, 709
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	3 cut(s)	104, 140, 482
BclI	TGATCA	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	166, 720
BfaI	CTAG	2 cut(s)	57, 497
BfmI	CTRYAG	1 cut(s)	115
BfoI	RGCGCY	2 cut(s)	79, 201
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	4 cut(s)	54, 74, 201, 234
BlsI	GCNGC	4 cut(s)	55, 75, 202, 235
Bme1390I	CCNGG	4 cut(s)	104, 140, 363, 482
BmgT120I	GGNCC	3 cut(s)	120, 121, 715
BmiI	GGNNCC	2 cut(s)	122, 461
BmrFI	CCNGG	4 cut(s)	104, 140, 363, 482
BmsI	GCATC	2 cut(s)	99, 220
BpiI	GAAGAC	4 cut(s)	54, 153, 278, 527
BpmI	CTGGAG	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 516
BseBI	CCWGG	3 cut(s)	104, 140, 482
BseDI	CCNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	481, 516
BseMII	CTCAG	4 cut(s)	365, 522, 561, 602
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	3 cut(s)	85, 187, 245
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	4 cut(s)	5, 122, 560, 716
BsiSI	CCGG	2 cut(s)	362, 723
BslI	CCNNNNNNNGG	2 cut(s)	481, 516
BsmAI	GTCTC	2 cut(s)	166, 720
BsnI	GGCC	4 cut(s)	5, 122, 560, 716
Bsp120I	GGGCCC	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	124, 464
Bsp143I	GATC	3 cut(s)	111, 321, 672
BspACI	CCGC	3 cut(s)	54, 153, 249
BspANI	GGCC	4 cut(s)	5, 122, 560, 716
BspCNI	CTCAG	4 cut(s)	366, 523, 560, 601
BspLI	GGNNCC	2 cut(s)	122, 461
BspMAI	CTGCAG	1 cut(s)	119
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	3 cut(s)	111, 321, 672
Bst2UI	CCWGG	3 cut(s)	104, 140, 482
Bst4CI	ACNGT	3 cut(s)	415, 685, 772
BstC8I	GCNNGC	2 cut(s)	16, 698
BstDEI	CTNAG	6 cut(s)	206, 213, 374, 531, 547, 588
BstENI	CCTNNNNNAGG	1 cut(s)	479
BstH2I	RGCGCY	2 cut(s)	79, 201
BstHHI	GCGC	2 cut(s)	78, 200
BstKTI	GATC	3 cut(s)	114, 324, 675
BstMAI	GTCTC	2 cut(s)	166, 720
BstMBI	GATC	3 cut(s)	111, 321, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 233
BstNI	CCWGG	3 cut(s)	104, 140, 482
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	4 cut(s)	102, 138, 361, 480
BstSFI	CTRYAG	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	124
BstV1I	GCAGC	3 cut(s)	85, 187, 245
BstV2I	GAAGAC	4 cut(s)	54, 153, 278, 527
BstXI	CCANNNNNNTGG	1 cut(s)	574
BsuRI	GGCC	4 cut(s)	5, 122, 560, 716
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	4 cut(s)	447, 675, 768, 790
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	16, 698
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	2 cut(s)	78, 200
Cfr13I	GGNCC	3 cut(s)	120, 121, 715
CsiI	ACCWGGT	2 cut(s)	102, 480
CviAII	CATG	2 cut(s)	15, 32
DdeI	CTNAG	6 cut(s)	206, 213, 374, 531, 547, 588
DpnI	GATC	3 cut(s)	113, 323, 674
DpnII	GATC	3 cut(s)	111, 321, 672
EaeI	YGGCCR	1 cut(s)	558
EciI	GGCGGA	1 cut(s)	238
Eco24I	GRGCYC	2 cut(s)	124, 464
EcoNI	CCTNNNNNAGG	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	120
EcoRII	CCWGG	3 cut(s)	102, 138, 480
EcoT38I	GRGCYC	2 cut(s)	124, 464
FaeI	CATG	2 cut(s)	18, 35
FaiI	YATR	7 cut(s)	16, 33, 240, 295, 297, 572, 610
FatI	CATG	2 cut(s)	14, 31
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	4 cut(s)	54, 74, 201, 234
FriOI	GRGCYC	2 cut(s)	124, 464
Fsp4HI	GCNGC	4 cut(s)	54, 74, 201, 234
FspBI	CTAG	2 cut(s)	57, 497
GlaI	GCGC	2 cut(s)	77, 199
GluI	GCNGC	4 cut(s)	54, 74, 201, 234
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	2 cut(s)	79, 201
HaeIII	GGCC	4 cut(s)	5, 122, 560, 716
HapII	CCGG	2 cut(s)	362, 723
HhaI	GCGC	2 cut(s)	78, 200
Hin1II	CATG	2 cut(s)	18, 35
Hin6I	GCGC	2 cut(s)	76, 198
HinP1I	GCGC	2 cut(s)	76, 198
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	5 cut(s)	245, 337, 527, 545, 578
HpaII	CCGG	2 cut(s)	362, 723
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	487, 630
Hpy188I	TCNGA	4 cut(s)	263, 375, 532, 591
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	2 cut(s)	487, 630
Hpy99I	CGWCG	2 cut(s)	73, 398
HpyAV	CCTTC	3 cut(s)	299, 647, 682
HpyCH4III	ACNGT	3 cut(s)	415, 685, 772
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	9 cut(s)	14, 25, 35, 117, 221, 233, 329, 584, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 233
HpyF3I	CTNAG	6 cut(s)	206, 213, 374, 531, 547, 588
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	2 cut(s)	18, 35
HspAI	GCGC	2 cut(s)	76, 198
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	3 cut(s)	111, 321, 672
LmnI	GCTCC	2 cut(s)	459, 746
Lsp1109I	GCAGC	3 cut(s)	85, 187, 245
LweI	GCATC	2 cut(s)	99, 220
MabI	ACCWGGT	2 cut(s)	102, 480
MaeI	CTAG	2 cut(s)	57, 497
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	3 cut(s)	397, 415, 772
MalI	GATC	3 cut(s)	113, 323, 674
MboI	GATC	3 cut(s)	111, 321, 672
MboII	GAAGA	4 cut(s)	54, 158, 283, 532
MfeI	CAATTG	1 cut(s)	594
MhlI	GDGCHC	2 cut(s)	124, 464
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	2 cut(s)	470, 594
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	1 cut(s)	539
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MslI	CAYNNNNRTG	2 cut(s)	30, 623
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	2 cut(s)	362, 723
MspR9I	CCNGG	4 cut(s)	104, 140, 363, 482
MunI	CAATTG	1 cut(s)	594
MvaI	CCWGG	3 cut(s)	104, 140, 482
MwoI	GCNNNNNNNGC	2 cut(s)	11, 233
NciI	CCSGG	1 cut(s)	363
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	3 cut(s)	111, 321, 672
NlaIII	CATG	2 cut(s)	18, 35
NlaIV	GGNNCC	2 cut(s)	122, 461
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	18
PaeI	GCATGC	1 cut(s)	18
PaqCI	CACCTGC	1 cut(s)	232
PfeI	GAWTC	4 cut(s)	245, 337, 527, 578
PkrI	GCNGC	4 cut(s)	55, 75, 202, 235
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
Psp6I	CCWGG	3 cut(s)	102, 138, 480
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	3 cut(s)	102, 138, 480
PspN4I	GGNNCC	2 cut(s)	122, 461
PspOMI	GGGCCC	1 cut(s)	120
PspPI	GGNCC	3 cut(s)	120, 121, 715
PstI	CTGCAG	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	641
RseI	CAYNNNNRTG	2 cut(s)	30, 623
SatI	GCNGC	4 cut(s)	54, 74, 201, 234
Sau3AI	GATC	3 cut(s)	111, 321, 672
Sau96I	GGNCC	3 cut(s)	120, 121, 715
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	4 cut(s)	104, 140, 363, 482
SduI	GDGCHC	2 cut(s)	124, 464
SexAI	ACCWGGT	2 cut(s)	102, 480
SfaNI	GCATC	2 cut(s)	99, 220
SfcI	CTRYAG	1 cut(s)	115
SmiMI	CAYNNNNRTG	2 cut(s)	30, 623
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	2 cut(s)	470, 594
SsiI	CCGC	3 cut(s)	54, 153, 249
SspMI	CTAG	2 cut(s)	57, 497
StyD4I	CCNGG	4 cut(s)	102, 138, 361, 480
TaaI	ACNGT	3 cut(s)	415, 685, 772
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	4 cut(s)	8, 320, 393, 543
TasI	AATT	2 cut(s)	470, 594
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	4 cut(s)	245, 337, 527, 578
TscAI	CASTG	4 cut(s)	454, 682, 775, 790
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	3 cut(s)	73, 200, 233
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	607, 666
TspRI	CASTG	4 cut(s)	454, 682, 775, 790
XagI	CCTNNNNNAGG	1 cut(s)	479
XceI	RCATGY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XspI	CTAG	2 cut(s)	57, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.