Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013129

Physical Location & Seq

Genomic Coordinates Reverse (-)

19549066 .. 19551032

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G179400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCTCAACTGCATGCTTTTTGCACCACCATGCACTCACTACAGCTTCTGCCAGGTCCTCCTCATCACAGCGCCAAGTGGTGAATGTCAAGCAGAACCAGATTGTGATCTGCAGGGCTCAGAAGCAGGCTGTCCAGGAAGAAGATGGTGCCGTTAACGTCTCCCGGCGATTGGCTCTCACAGTCCTCATTGGAGCTGCAGCCCTTGGCTCCAAGGTTTCCCCTGCTGATGCAGCTTATGGTGAATCCGCCAACGTTTTTGGAAAGCCAAAGACAAACACAGACTTCTTGCCATACGTTGGAGAAGGATTCAAGCTTTCGATTCCTGCAAAATGGAACCCAAGCAAAGAGGTTGAATACCCTGGTCAAGTTCTGAGATATGAGGACAACTTTGACACCACCAGCAACGTGGCTGTCACAATCACCCCGACCGATAAGAAATCTATCACCGACTATGGCTCCCCTGAGGAATTCCTCACCAAGGTGGACTATTTGCTAGGCAAACAAGCCTACTTTGGCAAGACTGATTCTGAGGGTGGTTTTGACTCCGGCGCTGTGGCCACGGCCAACATATTGGAATCTTCAAGTCAAGTGGTTGATGGGAAACCCTATTACTACTTGTCTGTGTTGACAAGGACAGCTGATGGAGATGAAGGTGGCAAGCACCAGCTCATCACAGCCACAGTGAAAGATGGCAAGCTTTACATCTGTAAGGCTCAAGCTGGAGACAAGAGGTGGTTCAAGGGAGCAAGGAAGTTTGTGGAGAGCTCTGCATCTTCCTTCAGTGTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0019898 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

265

Amino Acids

28.4

Weight (kDa)

8.28

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06680 AT1G06680
fragaria_vesca	FvH4_6g38900
malus_domestica	MD09G1146300.v1.1 MD17G1132900.v1.1
prunus_persica	Prupe.3G179400_v2.0.a1
pyrus_communis	pycom09g06660 pycom17g12650
rosa_chinensis	RchiOBHm_Chr2g0152481
rosa_laevigata	RLG00000020637
rosa_multiflora	Rmu_co8478837.1_g000001 Rmu_sc0005366.1_g000010
rosa_roxburghii	Rroxscaffold_2G00095680
rosa_rugosa	Rorug02G0433100
rosa_samantha	Rh2AG494900 Rh2BG507100 Rh2DG518300
rosa_wichuraiana	Rw2G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	299
AciI	CCGC	1 cut(s)	249
AclI	AACGTT	1 cut(s)	255
AcoI	YGGCCR	2 cut(s)	558, 564
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	766
AfiI	CCNNNNNNNGG	3 cut(s)	172, 299, 481
AgsI	TTSAA	4 cut(s)	313, 356, 585, 742
AjnI	CCWGG	3 cut(s)	53, 135, 361
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	9 cut(s)	47, 197, 236, 316, 641, 670, 700, 722, 768
AluI	AGCT	9 cut(s)	47, 197, 236, 316, 641, 670, 700, 722, 768
Alw21I	GWGCWC	1 cut(s)	770
Alw26I	GTCTC	2 cut(s)	166, 720
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	3 cut(s)	3, 558, 564
ApeKI	GCWGC	3 cut(s)	197, 200, 233
ApoI	RAATTY	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	75, 554
AspS9I	GGNCC	1 cut(s)	57
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	5 cut(s)	94, 254, 415, 439, 469
AvaII	GGWCC	1 cut(s)	57
AxyI	CCTNAGG	1 cut(s)	465
BalI	TGGCCA	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	121, 770
Bbv12I	GWGCWC	1 cut(s)	770
BbvI	GCAGC	3 cut(s)	184, 212, 245
BccI	CCATC	4 cut(s)	140, 593, 638, 686
BceAI	ACGGC	2 cut(s)	137, 579
BciT130I	CCWGG	3 cut(s)	55, 137, 363
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	166, 720
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	3 cut(s)	42, 112, 198
BfoI	RGCGCY	2 cut(s)	76, 555
BisI	GCNGC	3 cut(s)	198, 201, 234
BlsI	GCNGC	3 cut(s)	199, 202, 235
Bme1390I	CCNGG	4 cut(s)	55, 137, 166, 363
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	4 cut(s)	151, 211, 338, 460
BmrFI	CCNGG	4 cut(s)	55, 137, 166, 363
BmsI	GCATC	2 cut(s)	220, 782
BpmI	CTGGAG	1 cut(s)	744
BpuEI	CTTGAG	1 cut(s)	702
BpuMI	CCSGG	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	107
BsaJI	CCNNGG	5 cut(s)	205, 213, 361, 480, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 299, 481
Bse21I	CCTNAGG	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	107
BseBI	CCWGG	3 cut(s)	55, 137, 363
BseDI	CCNNGG	5 cut(s)	205, 213, 361, 480, 561
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	3 cut(s)	172, 299, 481
BseMII	CTCAG	4 cut(s)	134, 365, 456, 522
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	3 cut(s)	184, 212, 245
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	3 cut(s)	5, 560, 566
BshNI	GGYRCC	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	770
BsiSI	CCGG	2 cut(s)	166, 549
BslI	CCNNNNNNNGG	3 cut(s)	172, 299, 481
BsmAI	GTCTC	2 cut(s)	166, 720
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	5, 560, 566
Bsp1286I	GDGCHC	2 cut(s)	121, 770
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	3 cut(s)	5, 560, 566
BspCNI	CTCAG	4 cut(s)	133, 366, 457, 523
BspLI	GGNNCC	4 cut(s)	151, 211, 338, 460
BspMAI	CTGCAG	2 cut(s)	116, 202
BspT107I	GGYRCC	1 cut(s)	149
BssECI	CCNNGG	5 cut(s)	205, 213, 361, 480, 561
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	3 cut(s)	205, 213, 480
Bst2UI	CCWGG	3 cut(s)	55, 137, 363
Bst4CI	ACNGT	2 cut(s)	184, 685
BstC8I	GCNNGC	4 cut(s)	16, 129, 662, 698
BstDEI	CTNAG	4 cut(s)	120, 374, 465, 531
BstDSI	CCRYGG	1 cut(s)	561
BstENI	CCTNNNNNAGG	1 cut(s)	479
BstH2I	RGCGCY	2 cut(s)	76, 555
BstHHI	GCGC	2 cut(s)	75, 554
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	2 cut(s)	166, 720
BstMBI	GATC	1 cut(s)	108
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 233
BstNI	CCWGG	3 cut(s)	55, 137, 363
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	4 cut(s)	53, 135, 164, 361
BstSFI	CTRYAG	3 cut(s)	42, 112, 198
BstV1I	GCAGC	3 cut(s)	184, 212, 245
BstXI	CCANNNNNNTGG	2 cut(s)	409, 574
Bsu36I	CCTNAGG	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	5, 560, 566
BtgI	CCRYGG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	690, 790
Cac8I	GCNNGC	4 cut(s)	16, 129, 662, 698
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	2 cut(s)	75, 554
Cfr13I	GGNCC	1 cut(s)	57
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviAII	CATG	2 cut(s)	15, 32
DdeI	CTNAG	4 cut(s)	120, 374, 465, 531
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EaeI	YGGCCR	2 cut(s)	558, 564
EciI	GGCGGA	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	768
Eco130I	CCWWGG	3 cut(s)	205, 213, 480
Eco24I	GRGCYC	2 cut(s)	121, 770
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	768
Eco57I	CTGAAG	1 cut(s)	766
Eco81I	CCTNAGG	1 cut(s)	465
EcoICRI	GAGCTC	1 cut(s)	768
EcoNI	CCTNNNNNAGG	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	3 cut(s)	53, 135, 361
EcoT14I	CCWWGG	3 cut(s)	205, 213, 480
EcoT38I	GRGCYC	2 cut(s)	121, 770
ErhI	CCWWGG	3 cut(s)	205, 213, 480
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	2 cut(s)	18, 35
FaiI	YATR	7 cut(s)	16, 33, 240, 295, 381, 456, 572
FatI	CATG	2 cut(s)	14, 31
Fnu4HI	GCNGC	3 cut(s)	198, 201, 234
FriOI	GRGCYC	2 cut(s)	121, 770
Fsp4HI	GCNGC	3 cut(s)	198, 201, 234
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	2 cut(s)	74, 553
GluI	GCNGC	3 cut(s)	198, 201, 234
GsuI	CTGGAG	1 cut(s)	744
HaeII	RGCGCY	2 cut(s)	76, 555
HaeIII	GGCC	3 cut(s)	5, 560, 566
HapII	CCGG	2 cut(s)	166, 549
HhaI	GCGC	2 cut(s)	75, 554
Hin1II	CATG	2 cut(s)	18, 35
Hin6I	GCGC	2 cut(s)	73, 552
HinP1I	GCGC	2 cut(s)	73, 552
HincII	GTYRAC	2 cut(s)	157, 630
HindII	GTYRAC	2 cut(s)	157, 630
HindIII	AAGCTT	2 cut(s)	314, 698
HinfI	GANTC	6 cut(s)	245, 309, 322, 527, 545, 578
HpaI	GTTAAC	1 cut(s)	157
HpaII	CCGG	2 cut(s)	166, 549
HphI	GGTGA	5 cut(s)	94, 254, 415, 439, 469
Hpy166II	GTNNAC	3 cut(s)	157, 487, 630
Hpy188I	TCNGA	3 cut(s)	123, 375, 532
Hpy8I	GTNNAC	3 cut(s)	157, 487, 630
HpyAV	CCTTC	3 cut(s)	299, 647, 790
HpyCH4III	ACNGT	2 cut(s)	184, 685
HpyCH4IV	ACGT	4 cut(s)	159, 255, 297, 408
HpyCH4V	TGCA	8 cut(s)	14, 25, 35, 114, 200, 233, 329, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 233
HpyF3I	CTNAG	4 cut(s)	120, 374, 465, 531
HpySE526I	ACGT	4 cut(s)	159, 255, 297, 408
Hsp92II	CATG	2 cut(s)	18, 35
HspAI	GCGC	2 cut(s)	73, 552
KspAI	GTTAAC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	4 cut(s)	194, 215, 464, 746
Lsp1109I	GCAGC	3 cut(s)	184, 212, 245
LweI	GCATC	2 cut(s)	220, 782
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	4 cut(s)	159, 255, 297, 408
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	4 cut(s)	152, 155, 573, 768
MhlI	GDGCHC	2 cut(s)	121, 770
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	1 cut(s)	470
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	280
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	2 cut(s)	30, 482
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	2 cut(s)	166, 549
MspR9I	CCNGG	4 cut(s)	55, 137, 166, 363
MvaI	CCWGG	3 cut(s)	55, 137, 363
MwoI	GCNNNNNNNGC	2 cut(s)	11, 233
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	18, 35
NlaIV	GGNNCC	4 cut(s)	151, 211, 338, 460
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	18
OliI	CACNNNNGTG	1 cut(s)	482
PaeI	GCATGC	1 cut(s)	18
PfeI	GAWTC	5 cut(s)	245, 309, 322, 527, 578
PflMI	CCANNNNNTGG	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	199, 202, 235
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
PpuMI	RGGWCCY	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	770
Psp1406I	AACGTT	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	57
Psp6I	CCWGG	3 cut(s)	53, 135, 361
PspGI	CCWGG	3 cut(s)	53, 135, 361
PspN4I	GGNNCC	4 cut(s)	151, 211, 338, 460
PspPI	GGNCC	1 cut(s)	57
PspPPI	RGGWCCY	1 cut(s)	57
PstI	CTGCAG	2 cut(s)	116, 202
PstNI	CAGNNNCTG	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	641
RseI	CAYNNNNRTG	2 cut(s)	30, 482
SacI	GAGCTC	1 cut(s)	770
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	198, 201, 234
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	4 cut(s)	55, 137, 166, 363
SduI	GDGCHC	2 cut(s)	121, 770
SfaNI	GCATC	2 cut(s)	220, 782
SfcI	CTRYAG	3 cut(s)	42, 112, 198
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	2 cut(s)	30, 482
SmlI	CTYRAG	1 cut(s)	717
SmoI	CTYRAG	1 cut(s)	717
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	1 cut(s)	470
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	497
SstI	GAGCTC	1 cut(s)	770
StyD4I	CCNGG	4 cut(s)	53, 135, 164, 361
StyI	CCWWGG	3 cut(s)	205, 213, 480
TaaI	ACNGT	2 cut(s)	184, 685
TaiI	ACGT	4 cut(s)	162, 258, 300, 411
TaqI	TCGA	1 cut(s)	320
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	1 cut(s)	470
TfiI	GAWTC	5 cut(s)	245, 309, 322, 527, 578
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	690, 790
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	3 cut(s)	197, 200, 233
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	666
TspRI	CASTG	2 cut(s)	690, 790
Van91I	CCANNNNNTGG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	57
XagI	CCTNNNNNAGG	1 cut(s)	479
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	2 cut(s)	143, 406
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.