Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013129

Physical Location & Seq

Genomic Coordinates Forward (+)

11415644 .. 11417410

Gene Structure 1767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1146300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCCTCCACTGCATGCTTTTTGCACCACCATGCACTAACTACCGCCGCTTCTGCCCGGTCATCATCGTCGTCACAGCGCCAAGTGGTGAACATCAACAAGCACAACCAGGTTGTGATCTGCCGGGCCCAGAAGCAGGCAGCCGGCCAGGAAGAAGAGAGCGGTGCTAACGTCTCACGGCGGTTGGCTCTCACAGTCCTCATCGGTGCTGCAGCCCTTGGCTCCAAGGTTTCCCCTGCTGATGCAGCTTATGGTGAATCGGCCAATGTCTTCGGAAAGCCAAAGTCGAACACAGACTTCTTGCCATACGTTGGAGAGGGATTCAAGCTATCCATTCCTGCAAAATGGAACCCTAGCAAAGAGGTTGAGTTCCCTGGTCAAGTTCTTAGGTACGAGGACAACTTCGACAGCAACAGCAATGTGTCCGTCACAATCACCCCAACCGACAAGAAATCCATCGCCGACTATGGCTCCCCCGAGGAATTCCTCGCGAAGGTGGACTACTTGCTAGGCAAACAAGCCTACTTTGGCAAGACTGAATCCGAGGGTGGTTTCGACCCGGGTGCCGTGGCCACAGCCAACATATTGGAGAGTTCTAGTCGAGTGATTGACGGAAAGCAGTACTACTACGTATCTGTGTTGACAAGGACAGCCGACGGAGATGAAGGAGGCAAGCACCAGCTTATCACAGCCACCGTGAAAGACGGCAAGCTCTACATTCTAAAGGCACAAGCCGGAGACAAGAGGTGGTTCAAAGGAGCAAGGAAGTTTGTAGAGAGCACTGCAAGTTCTTTCAGTGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0019898 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

269

Amino Acids

28.74

Weight (kDa)

8.67

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	99 - 267	5.8e-40	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06680 AT1G06680
fragaria_vesca	FvH4_6g38900
malus_domestica	MD09G1146300.v1.1 MD17G1132900.v1.1
prunus_persica	Prupe.3G179400_v2.0.a1
pyrus_communis	pycom09g06660 pycom17g12650
rosa_chinensis	RchiOBHm_Chr2g0152481
rosa_laevigata	RLG00000020637
rosa_multiflora	Rmu_co8478837.1_g000001 Rmu_sc0005366.1_g000010
rosa_roxburghii	Rroxscaffold_2G00095680
rosa_rugosa	Rorug02G0433100
rosa_samantha	Rh2AG494900 Rh2BG507100 Rh2DG518300
rosa_wichuraiana	Rw2G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	563
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	491
AciI	CCGC	4 cut(s)	45, 48, 162, 181
AcoI	YGGCCR	3 cut(s)	145, 261, 570
AcsI	RAATTY	1 cut(s)	482
AfaI	GTAC	2 cut(s)	392, 623
AfiI	CCNNNNNNNGG	3 cut(s)	136, 311, 493
AgsI	TTSAA	2 cut(s)	325, 754
AjnI	CCWGG	3 cut(s)	108, 147, 373
AluBI	AGCT	4 cut(s)	248, 328, 682, 712
AluI	AGCT	4 cut(s)	248, 328, 682, 712
Alw21I	GWGCWC	1 cut(s)	782
Alw26I	GTCTC	2 cut(s)	178, 732
Ama87I	CYCGRG	2 cut(s)	476, 559
AoxI	GGCC	5 cut(s)	3, 126, 145, 261, 570
ApaI	GGGCCC	1 cut(s)	130
ApeKI	GCWGC	4 cut(s)	140, 209, 212, 245
ApoI	RAATTY	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	126, 127
AsuC2I	CCSGG	4 cut(s)	58, 125, 560, 561
AsuHPI	GGTGA	3 cut(s)	100, 266, 427
AvaI	CYCGRG	2 cut(s)	476, 559
BaeGI	GKGCMC	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	563
BanII	GRGCYC	1 cut(s)	130
BarI	GAAGNNNNNNTAC	2 cut(s)	485, 517
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	782
BbvI	GCAGC	4 cut(s)	152, 196, 224, 257
BccI	CCATC	1 cut(s)	464
BceAI	ACGGC	3 cut(s)	194, 551, 721
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	3 cut(s)	110, 149, 375
BcnI	CCSGG	4 cut(s)	58, 125, 560, 561
BcoDI	GTCTC	2 cut(s)	178, 732
BfaI	CTAG	3 cut(s)	354, 509, 597
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	5 cut(s)	48, 141, 210, 213, 246
BlsI	GCNGC	5 cut(s)	49, 142, 211, 214, 247
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	7 cut(s)	58, 110, 125, 149, 375, 560, 561
BmeT110I	CYCGRG	2 cut(s)	476, 559
BmgT120I	GGNCC	2 cut(s)	126, 127
BmiI	GGNNCC	5 cut(s)	128, 223, 350, 472, 565
BmrFI	CCNGG	7 cut(s)	58, 110, 125, 149, 375, 560, 561
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	262
BpuMI	CCSGG	4 cut(s)	58, 125, 560, 561
BsaAI	YACGTR	1 cut(s)	631
BsaJI	CCNNGG	7 cut(s)	217, 225, 373, 477, 543, 559, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 311, 493
Bse118I	RCCGGY	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	3 cut(s)	110, 149, 375
BseDI	CCNNGG	7 cut(s)	217, 225, 373, 477, 543, 559, 567
BseLI	CCNNNNNNNGG	3 cut(s)	136, 311, 493
BseMI	GCAATG	1 cut(s)	424
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	4 cut(s)	152, 196, 224, 257
Bsh1236I	CGCG	1 cut(s)	491
BshFI	GGCC	5 cut(s)	5, 128, 147, 263, 572
BshNI	GGYRCC	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	782
BsiHKCI	CYCGRG	2 cut(s)	476, 559
BsiSI	CCGG	5 cut(s)	58, 124, 144, 560, 735
BslI	CCNNNNNNNGG	3 cut(s)	136, 311, 493
BsmAI	GTCTC	2 cut(s)	178, 732
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	5 cut(s)	5, 128, 147, 263, 572
BsoBI	CYCGRG	2 cut(s)	476, 559
Bsp120I	GGGCCC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	130, 782
Bsp143I	GATC	1 cut(s)	117
Bsp68I	TCGCGA	1 cut(s)	491
BspACI	CCGC	4 cut(s)	45, 48, 162, 181
BspANI	GGCC	5 cut(s)	5, 128, 147, 263, 572
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	5 cut(s)	128, 223, 350, 472, 565
BspMAI	CTGCAG	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	7 cut(s)	217, 225, 373, 477, 543, 559, 567
BssMI	GATC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	217, 225
Bst2UI	CCWGG	3 cut(s)	110, 149, 375
Bst4CI	ACNGT	2 cut(s)	196, 697
Bst6I	CTCTTC	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	631
BstC8I	GCNNGC	5 cut(s)	16, 138, 145, 674, 710
BstDEI	CTNAG	1 cut(s)	386
BstDSI	CCRYGG	1 cut(s)	567
BstENI	CCTNNNNNAGG	1 cut(s)	491
BstFNI	CGCG	1 cut(s)	491
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	2 cut(s)	178, 732
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 53, 245
BstNI	CCWGG	3 cut(s)	110, 149, 375
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	7 cut(s)	56, 108, 123, 147, 373, 558, 559
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	130
BstSNI	TACGTA	1 cut(s)	631
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	4 cut(s)	152, 196, 224, 257
BstV2I	GAAGAC	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	586
BsuRI	GGCC	5 cut(s)	5, 128, 147, 263, 572
BtgI	CCRYGG	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	442
BtsI	GCAGTG	2 cut(s)	9, 780
BtsIMutI	CAGTG	3 cut(s)	9, 780, 802
BtuMI	TCGCGA	1 cut(s)	491
Cac8I	GCNNGC	5 cut(s)	16, 138, 145, 674, 710
CfoI	GCGC	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	126, 127
Cfr9I	CCCGGG	1 cut(s)	559
CsiI	ACCWGGT	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	391, 622
CviAII	CATG	2 cut(s)	15, 32
CviQI	GTAC	2 cut(s)	391, 622
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
EaeI	YGGCCR	3 cut(s)	145, 261, 570
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco105I	TACGTA	1 cut(s)	631
Eco130I	CCWWGG	2 cut(s)	217, 225
Eco24I	GRGCYC	1 cut(s)	130
Eco88I	CYCGRG	2 cut(s)	476, 559
EcoNI	CCTNNNNNAGG	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	3 cut(s)	108, 147, 373
EcoT14I	CCWWGG	2 cut(s)	217, 225
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	2 cut(s)	217, 225
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	2 cut(s)	18, 35
FaiI	YATR	7 cut(s)	16, 33, 252, 307, 468, 584, 805
FatI	CATG	2 cut(s)	14, 31
Fnu4HI	GCNGC	5 cut(s)	48, 141, 210, 213, 246
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	5 cut(s)	48, 141, 210, 213, 246
FspBI	CTAG	3 cut(s)	354, 509, 597
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	5 cut(s)	48, 141, 210, 213, 246
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	5 cut(s)	5, 128, 147, 263, 572
HapII	CCGG	5 cut(s)	58, 124, 144, 560, 735
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	18, 35
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	3 cut(s)	257, 321, 539
HpaII	CCGG	5 cut(s)	58, 124, 144, 560, 735
HphI	GGTGA	3 cut(s)	100, 266, 427
Hpy166II	GTNNAC	3 cut(s)	91, 499, 642
Hpy188I	TCNGA	2 cut(s)	275, 544
Hpy188III	TCNNGA	1 cut(s)	490
Hpy8I	GTNNAC	3 cut(s)	91, 499, 642
Hpy99I	CGWCG	2 cut(s)	73, 659
HpyAV	CCTTC	2 cut(s)	487, 659
HpyCH4III	ACNGT	2 cut(s)	196, 697
HpyCH4IV	ACGT	3 cut(s)	171, 309, 630
HpyCH4V	TGCA	8 cut(s)	14, 25, 35, 212, 245, 341, 785, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 53, 245
HpyF3I	CTNAG	1 cut(s)	386
HpySE526I	ACGT	3 cut(s)	171, 309, 630
Hsp92II	CATG	2 cut(s)	18, 35
HspAI	GCGC	1 cut(s)	79
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	3 cut(s)	227, 476, 758
Lsp1109I	GCAGC	4 cut(s)	152, 196, 224, 257
LweI	GCATC	1 cut(s)	232
MabI	ACCWGGT	1 cut(s)	108
MaeI	CTAG	3 cut(s)	354, 509, 597
MaeII	ACGT	3 cut(s)	171, 309, 630
MaeIII	GTNAC	2 cut(s)	72, 427
MalI	GATC	1 cut(s)	119
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	1 cut(s)	117
MboII	GAAGA	3 cut(s)	164, 167, 262
MhlI	GDGCHC	2 cut(s)	130, 782
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	1 cut(s)	482
MluNI	TGGCCA	1 cut(s)	572
MmeI	TCCRAC	1 cut(s)	292
Mox20I	TGGCCA	1 cut(s)	572
MroNI	GCCGGC	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	572
MslI	CAYNNNNRTG	1 cut(s)	30
Msp20I	TGGCCA	1 cut(s)	572
MspI	CCGG	5 cut(s)	58, 124, 144, 560, 735
MspR9I	CCNGG	7 cut(s)	58, 110, 125, 149, 375, 560, 561
MvaI	CCWGG	3 cut(s)	110, 149, 375
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	3 cut(s)	11, 53, 245
NaeI	GCCGGC	1 cut(s)	145
NciI	CCSGG	4 cut(s)	58, 125, 560, 561
NdeII	GATC	1 cut(s)	117
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	18, 35
NlaIV	GGNNCC	5 cut(s)	128, 223, 350, 472, 565
NmuCI	GTSAC	2 cut(s)	72, 427
NruI	TCGCGA	1 cut(s)	491
NspI	RCATGY	1 cut(s)	18
PaeI	GCATGC	1 cut(s)	18
PdiI	GCCGGC	1 cut(s)	145
PfeI	GAWTC	3 cut(s)	257, 321, 539
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	5 cut(s)	49, 142, 211, 214, 247
Ppu21I	YACGTR	1 cut(s)	631
Psp6I	CCWGG	3 cut(s)	108, 147, 373
PspGI	CCWGG	3 cut(s)	108, 147, 373
PspN4I	GGNNCC	5 cut(s)	128, 223, 350, 472, 565
PspOMI	GGGCCC	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	126, 127
PstI	CTGCAG	1 cut(s)	214
RruI	TCGCGA	1 cut(s)	491
RsaI	GTAC	2 cut(s)	392, 623
RsaNI	GTAC	2 cut(s)	391, 622
RseI	CAYNNNNRTG	1 cut(s)	30
SatI	GCNGC	5 cut(s)	48, 141, 210, 213, 246
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	126, 127
ScaI	AGTACT	1 cut(s)	623
ScrFI	CCNGG	7 cut(s)	58, 110, 125, 149, 375, 560, 561
SduI	GDGCHC	2 cut(s)	130, 782
SexAI	ACCWGGT	1 cut(s)	108
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	210
SmaI	CCCGGG	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	30
SnaBI	TACGTA	1 cut(s)	631
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	1 cut(s)	482
SsiI	CCGC	4 cut(s)	45, 48, 162, 181
SspMI	CTAG	3 cut(s)	354, 509, 597
StyD4I	CCNGG	7 cut(s)	56, 108, 123, 147, 373, 558, 559
StyI	CCWWGG	2 cut(s)	217, 225
TaaI	ACNGT	2 cut(s)	196, 697
TaiI	ACGT	3 cut(s)	174, 312, 633
TaqI	TCGA	4 cut(s)	287, 405, 555, 601
TasI	AATT	1 cut(s)	482
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	257, 321, 539
TscAI	CASTG	3 cut(s)	16, 787, 802
TseFI	GTSAC	2 cut(s)	72, 427
TseI	GCWGC	4 cut(s)	140, 209, 212, 245
Tsp45I	GTSAC	2 cut(s)	72, 427
TspDTI	ATGAA	1 cut(s)	678
TspGWI	ACGGA	3 cut(s)	415, 627, 672
TspMI	CCCGGG	1 cut(s)	559
TspRI	CASTG	3 cut(s)	16, 787, 802
Van91I	CCANNNNNTGG	1 cut(s)	311
XagI	CCTNNNNNAGG	1 cut(s)	491
XapI	RAATTY	1 cut(s)	482
XceI	RCATGY	1 cut(s)	18
XmaI	CCCGGG	1 cut(s)	559
XspI	CTAG	3 cut(s)	354, 509, 597
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.