Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004773

Physical Location & Seq

Genomic Coordinates Forward (+)

55463974 .. 55466335

Gene Structure 2362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0433100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGGAGTCTCTTCGGTTATCGTGATTCGAGTCCATCTGTGAAGAACATTCTTCTTCTAGACTCTGAAGGGAAGCGTGTGGCCGTCAAGTATTACTCTGATGATTGGCCGACGAATGCTGCAAAGCTAGCTTTTGAAAGATCTGTGTTTGCTAAGACTCTAAAGACAAATGCAAGGATAGAAGCGGAGATAATGATGTTCGAGAGCCACGTTGTTACATATAAGTTTGTGCAGGACCTTCACTTCTTTGTGACTGGAGGTGATGATGAAAACGAACTCATTTTAGCCACTGTACTTCAGGGGTTCTTTGATGCAGTTGCCCTTCTCTTGAGGAACAACGTCGACAAAAGAGAGGCACTAGAGAACCTGGATCTCATACTTCTATGCTTTGATGAGATCGTTGATGGAGGGATGATACTTGAAACAGATCCAACTGTTATCGCAGGAAAGGTGGCAACTCATACCATGGATGCTGATGCACCATTGTCTGAGCAGATCAACTGGCGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0019898 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

170

Amino Acids

19.07

Weight (kDa)

4.69

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clat_adaptor_s	PF01217	14 - 153	4.1e-21	Clathrin adaptor complex small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08560 AT5G08560 AT5G08560
fragaria_vesca	FvH4_6g38890 FvH4_6g38890
malus_domestica	MD09G1146400.v1.1 MD17G1133000.v1.1
prunus_persica	Prupe.1G352100_v2.0.a1 Prupe.1G352100_v2.0.a1 Prupe.1G352100_v2.0.a1 Prupe.1G352100_v2.0.a1 Prupe.3G179200_v2.0.a1 Prupe.3G179200_v2.0.a1 Prupe.3G179200_v2.0.a1 Prupe.3G179200_v2.0.a1
pyrus_communis	pycom09g06670 pycom17g12660
rosa_chinensis	RchiOBHm_Chr2g0152471
rosa_laevigata	RLG00000020636 RLG00000025225 RLG00000025228
rosa_multiflora	Rmu_sc0005366.1_g000011
rosa_roxburghii	Rroxscaffold_2G00095690
rosa_rugosa	Rorug02G0433000 Rorug02G0433100 Rorug02G0433100
rosa_samantha	Rh2AG494800 Rh2BG507000 Rh2CG481000 Rh2DG518200
rosa_wichuraiana	Rw2G040720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	2 cut(s)	185, 505
AclWI	GGATC	2 cut(s)	378, 422
AcoI	YGGCCR	2 cut(s)	81, 107
AcuI	CTGAAG	2 cut(s)	87, 281
AfaI	GTAC	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	137, 422
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	2 cut(s)	127, 131
AluI	AGCT	2 cut(s)	127, 131
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	2 cut(s)	378, 422
AoxI	GGCC	2 cut(s)	81, 107
ApeKI	GCWGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	272
AsuNHI	GCTAGC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	43, 398
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	3 cut(s)	59, 128, 359
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	2 cut(s)	120, 506
BlsI	GCNGC	2 cut(s)	121, 507
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	3 cut(s)	301, 460, 466
BmtI	GCTAGC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	465
Bse1I	ACTGG	2 cut(s)	259, 506
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	2 cut(s)	417, 475
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	2 cut(s)	259, 506
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	251
BshFI	GGCC	2 cut(s)	83, 109
BsmAI	GTCTC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	83, 109
Bsp143I	GATC	5 cut(s)	140, 370, 396, 427, 495
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	2 cut(s)	185, 505
BspANI	GGCC	2 cut(s)	83, 109
BspCNI	CTCAG	1 cut(s)	481
BspOI	GCTAGC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	378, 422
BsrI	ACTGG	2 cut(s)	259, 506
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	5 cut(s)	140, 370, 396, 427, 495
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	292, 436
Bst6I	CTCTTC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	153, 489
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	2 cut(s)	417, 475
BstKTI	GATC	5 cut(s)	143, 373, 399, 430, 498
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	5 cut(s)	140, 370, 396, 427, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	106
BstX2I	RGATCY	3 cut(s)	140, 370, 427
BstYI	RGATCY	3 cut(s)	140, 370, 427
BsuRI	GGCC	2 cut(s)	83, 109
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	417, 475
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	1 cut(s)	466
CviJI	RGCY	6 cut(s)	83, 109, 127, 131, 207, 287
CviKI_1	RGCY	6 cut(s)	83, 109, 127, 131, 207, 287
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	153, 489
DpnI	GATC	5 cut(s)	142, 372, 398, 429, 497
DpnII	GATC	5 cut(s)	140, 370, 396, 427, 495
EaeI	YGGCCR	2 cut(s)	81, 107
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	87, 281
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	1 cut(s)	469
FaiI	YATR	6 cut(s)	220, 222, 377, 385, 462, 467
FatI	CATG	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	120, 506
FokI	GGATG	2 cut(s)	424, 482
Fsp4HI	GCNGC	2 cut(s)	120, 506
FspBI	CTAG	3 cut(s)	59, 128, 359
GluI	GCNGC	2 cut(s)	120, 506
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	83, 109
Hin1II	CATG	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	5 cut(s)	7, 26, 31, 62, 157
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	3 cut(s)	67, 100, 490
Hpy188III	TCNNGA	4 cut(s)	23, 59, 202, 328
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	2 cut(s)	115, 344
HpyAV	CCTTC	3 cut(s)	62, 248, 332
HpyCH4III	ACNGT	2 cut(s)	292, 436
HpyCH4IV	ACGT	2 cut(s)	210, 339
HpyCH4V	TGCA	5 cut(s)	122, 173, 232, 314, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	153, 489
HpySE526I	ACGT	2 cut(s)	210, 339
Hsp92II	CATG	1 cut(s)	469
Kzo9I	GATC	5 cut(s)	140, 370, 396, 427, 495
LpnPI	CCDG	7 cut(s)	218, 240, 284, 353, 380, 429, 487
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	3 cut(s)	301, 460, 466
MaeI	CTAG	3 cut(s)	59, 128, 359
MaeII	ACGT	2 cut(s)	210, 339
MaeIII	GTNAC	2 cut(s)	214, 250
MalI	GATC	5 cut(s)	142, 372, 398, 429, 497
MboI	GATC	5 cut(s)	140, 370, 396, 427, 495
MboII	GAAGA	4 cut(s)	4, 44, 47, 55
MflI	RGATCY	3 cut(s)	140, 370, 427
MlyI	GAGTC	4 cut(s)	16, 40, 56, 151
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	4 cut(s)	251, 324, 346, 401
MspR9I	CCNGG	1 cut(s)	368
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	128
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	5 cut(s)	140, 370, 396, 427, 495
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	121, 507
PleI	GAGTC	4 cut(s)	15, 39, 56, 151
PpsI	GAGTC	4 cut(s)	15, 39, 56, 151
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	235
PspPPI	RGGWCCY	1 cut(s)	235
PsuI	RGATCY	3 cut(s)	140, 370, 427
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SalI	GTCGAC	1 cut(s)	341
SatI	GCNGC	2 cut(s)	120, 506
Sau3AI	GATC	5 cut(s)	140, 370, 396, 427, 495
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	4 cut(s)	16, 40, 56, 151
ScrFI	CCNGG	1 cut(s)	368
SetI	ASST	8 cut(s)	129, 133, 213, 240, 262, 342, 369, 453
SfaNI	GCATC	3 cut(s)	301, 460, 466
SinI	GGWCC	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
SsiI	CCGC	2 cut(s)	185, 505
SspMI	CTAG	3 cut(s)	59, 128, 359
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	292, 436
TaiI	ACGT	2 cut(s)	213, 342
TaqI	TCGA	3 cut(s)	29, 201, 342
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	1 cut(s)	26
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	235
XbaI	TCTAGA	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	3 cut(s)	59, 128, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.