Rorug02G0433000

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004773
Physical Location & Seq
Forward (+)
55456149 .. 55457951
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0433000.1

Sequence Viewer

Length: 393 bp
ATGAAGGGAATAAGTTATTGGTTTGTTATAGCTCTTCAAATCATGAGTTGGGTTTCTGCAACAAGCAGACTTTTTCCTCCAAGTAATGGTCTAGATGTTCATCAAGCAGGTTCAGGACCGAATGCAGATCAGTCTTCAGATGTTACCTTGGAACAGGGATTAACAAGCTCAACTATTGGAGTGGCAAAGAAAAATGAAATAGCAACCTACAGTGGGGGAAGCAAAATAGGGTCAAGCCCTCCAAGCTGTGAGAACAAGTGTTATGGATGCACTCCATGTGAAGCTATTCAAGTGCCCACTACCAAAAAGCACACCCATTTCAGGGTTCAGTATGCAAATTATGAGCCAGAGGGTTGGAAATGCAAGTGTGGCCCTTCATTCTACAGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

130

Amino Acids

14.03

Weight (kDa)

8.21

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 75 - 130 1.5e-21 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
AccB7I CCANNNNNTGG 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 120
AfiI CCNNNNNNNGG 4 cut(s) 86, 213, 321, 322
AgsI TTSAA 2 cut(s) 38, 290
AjuI GAANNNNNNNTTGG 1 cut(s) 33
AluBI AGCT 4 cut(s) 32, 168, 246, 284
AluI AGCT 4 cut(s) 32, 168, 246, 284
AoxI GGCC 1 cut(s) 370
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 116, 371
AvaII GGWCC 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 126
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 2 cut(s) 208, 382
BfuAI ACCTGC 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 116, 371
BmsI GCATC 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 213, 321, 322
Bse8I GATNNNNATC 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 272
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 4 cut(s) 86, 213, 321, 322
BseSI GKGCMC 1 cut(s) 297
BshFI GGCC 1 cut(s) 372
BslI CCNNNNNNNGG 4 cut(s) 86, 213, 321, 322
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 1 cut(s) 372
BspHI TCATGA 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 98
BspQI GCTCTTC 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 272
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 243, 369
BstSFI CTRYAG 2 cut(s) 208, 382
BstSLI GKGCMC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 354
BsuRI GGCC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 98
CciI TCATGA 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 116, 371
CviAII CATG 2 cut(s) 43, 276
CviJI RGCY 8 cut(s) 32, 168, 237, 246, 284, 346, 372, 387
CviKI_1 RGCY 8 cut(s) 32, 168, 237, 246, 284, 346, 372, 387
DdeI CTNAG 1 cut(s) 390
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 46, 279
FaiI YATR 6 cut(s) 29, 44, 264, 277, 333, 342
FatI CATG 2 cut(s) 42, 275
FokI GGATG 1 cut(s) 279
FspBI CTAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 372
Hin1II CATG 2 cut(s) 46, 279
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 3 cut(s) 43, 92, 114
HpyAV CCTTC 1 cut(s) 384
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 5 cut(s) 59, 125, 270, 335, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 369
HpyF3I CTNAG 1 cut(s) 390
Hsp92II CATG 2 cut(s) 46, 279
Kzo9I GATC 1 cut(s) 127
LguI GCTCTTC 1 cut(s) 39
LpnPI CCDG 5 cut(s) 93, 99, 140, 307, 360
LweI GCATC 1 cut(s) 257
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 2 cut(s) 26, 126
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 3 cut(s) 87, 249, 343
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 127
MwoI GCNNNNNNNGC 2 cut(s) 243, 369
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 46, 279
PagI TCATGA 1 cut(s) 42
PciSI GCTCTTC 1 cut(s) 39
PctI GAATGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 285
PflMI CCANNNNNTGG 1 cut(s) 86
PspPI GGNCC 2 cut(s) 116, 371
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 161
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 2 cut(s) 116, 371
SduI GDGCHC 1 cut(s) 297
SetI ASST 7 cut(s) 34, 112, 149, 170, 209, 248, 286
SfaNI GCATC 1 cut(s) 257
SfcI CTRYAG 2 cut(s) 208, 382
SinI GGWCC 1 cut(s) 116
Sse9I AATT 1 cut(s) 337
SspMI CTAG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 212
TaqII GACCGA 1 cut(s) 133
TasI AATT 1 cut(s) 337
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 217
TspDTI ATGAA 4 cut(s) 17, 89, 210, 366
TspRI CASTG 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 116
XbaI TCTAGA 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.