Prupe.3G179200_v2.0.a1

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
19542337 .. 19548534
6198 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G179200.4

Sequence Viewer

Length: 1737 bp
ATGGGAGGTGTGGGAGATGAAGAACCAGCCACAAAACGCATGAAATTATCCCCTGGACAATTGAGAGGTCTATCCAACGGTTCATCTATTACAGAGCCTGTAGCTGGCTCTTCAAGAGACTTGATGGCTCGGCCCCTAACATCTGAAGGGGACGAAGAGGTTGTTGGTTCAAAAGGAGTTATTAAGAGGGTGGAATTTGTCCGACTAATAGCAAAGGCACTATATTCTCTTGGCTATAAGAAAAGTAGTGCTCATTTGGAAGAAGAGTCTGGGATACCGTTGCACTCTTCTGTGGTAACTCTTTTTATGCAGCAAATTCTGGACGGAAATTGGGATGGAAGTGTCGACACATTGCAAAAAATTGGTCTATCAGATGAAAACATTACTAAATCAGCCTCCTTTATGATATTGGAGCAGAAGTTCTTTGAACTTCTAGATGATGAAAAAGACATGGATGCACTGAAGACATTGAGGACTGAGATTGTACCTCTCTGCATCAATGGTAGTAGAGTTCGTGAGCTTTCTTCCTGCATAGTTTCGCCTTCATTTGGTGGGACTCCTGGTAAAAACATTGCAAGGGCCAAGTCTCGGCCAAAGTTACTGGAAGACTTGCAGAAACTGCTTCCCCCAACAGTTATGATACTTGAAAGACGGTTGGAACATTTGGTTGAACAGGCCCTAGTCTTACAACGTGATGCTTGCATTTTTCACAACTCCTTGAACGAGGAAATGTCTTTGTACACTGATCATCGATGTGGGAGAGATCAGATTCCTTCTCGAACATTACAGATATTACAAGCACACAGTGACGAAGTCTGGTTTCTGCAATTTTCACACAATGGGAAATACTTAGCTTCATCATCAAGTGATCGATTAGCAATCATATGGGAGGTTGATGTGAATGGTTGTGTTTCTTTAAAGCATAGACTATCTGGTCACCAGAAACCTGTTTCCATAGTTTCATGGAGTCCTGATGACCATCAGCTCCTCACCTGTGGAGTGGAGGAGGTGGTCAGGCGTTGGGATGTTTCTTCTGGTGAATGCCTCCATGTTTATGAAAAACCTGGTCTTGGTCTGGTGTCCTGTGGATGGTTTCCAGATGGAAAATGGATATTCTCTGGTGTCAGTGACAAGAGCATCTGCATGTGGGAGTTAGATGGGAAGGAGCTGGAGTGCTGGAAAGGCCAACGAACTTTACGAATCTCTGATTTGGAGATAACCAGTGATGGGAAGCAAATTATAAGTACTTGTAGAGATAATGCTATATTACTACTTGACAGGGAAGCCAAAGTTGAGATATTGATTGAAGAGGATCAAACTATAACTTCTTTTTCATTATCAAGAGATAATAGGTTCTTGTTGGTTAATCTTCTGAACCAAGAAATCCATCTCTGGAGCATAGAAGGTGAAATCAAGCTTGTTGCTAAGTACAAAGGTCACAAACGCACCCGATTTGTTATCAGGTCTTGTTTTGGTGGACTTGAACAAGCTTTCATCGCTAGTGGTAGTGAGGATTCACAGGTTTACGTATGGCATAGAGGCTCAGGGGAGCTCATAGAGGCATTGCCAGGTCATTCTGGAGCTGTTAATTGTGTCAGCTGGAATCCAACAAACACACACATGTTAGCCTCAGCCAGTGATGACCGTACAATTCGGATATGGGGCCTAAAGGAGCTAAAAGTGAAACACAGGGATGCACACAGCAATGGCGTCCATTATTGCAATGGGGGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

579

Amino Acids

64.52

Weight (kDa)

5.98

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1241
AasI GACNNNNNNGTC 1 cut(s) 933
AccI GTMKAC 1 cut(s) 345
AclWI GGATC 1 cut(s) 1320
AcoI YGGCCR 1 cut(s) 590
AcsI RAATTY 2 cut(s) 194, 315
AcuI CTGAAG 2 cut(s) 165, 482
AcyI GRCGYC 1 cut(s) 1710
AdeI CACNNNGTG 1 cut(s) 806
AfaI GTAC 5 cut(s) 486, 740, 1246, 1430, 1648
AfiI CCNNNNNNNGG 6 cut(s) 104, 548, 588, 1070, 1089, 1227
AflIII ACRYGT 1 cut(s) 1620
AgsI TTSAA 8 cut(s) 114, 171, 428, 647, 671, 721, 1307, 1484
AjnI CCWGG 4 cut(s) 52, 559, 1063, 1567
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AloI GAACNNNNNNTCC 2 cut(s) 404, 436
Alw21I GWGCWC 2 cut(s) 253, 1554
Alw26I GTCTC 2 cut(s) 111, 591
AlwI GGATC 1 cut(s) 1320
AlwNI CAGNNNCTG 2 cut(s) 98, 619
AoxI GGCC 6 cut(s) 131, 579, 590, 675, 1183, 1663
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 2 cut(s) 194, 315
ArsI GACNNNNNNTTYG 2 cut(s) 349, 381
AspS9I GGNCC 4 cut(s) 132, 579, 676, 1663
AsuHPI GGTGA 4 cut(s) 929, 982, 1049, 1418
BanII GRGCYC 1 cut(s) 1554
BbsI GAAGAC 2 cut(s) 470, 612
Bbv12I GWGCWC 2 cut(s) 253, 1554
BbvCI CCTCAGC 1 cut(s) 1630
BbvI GCAGC 1 cut(s) 322
BccI CCATC 8 cut(s) 118, 329, 987, 1083, 1094, 1151, 1220, 1395
BciT130I CCWGG 4 cut(s) 54, 561, 1065, 1569
BciVI GTATCC 1 cut(s) 267
BclI TGATCA 1 cut(s) 745
BcoDI GTCTC 2 cut(s) 111, 591
BfaI CTAG 3 cut(s) 434, 680, 1500
BfmI CTRYAG 1 cut(s) 99
BfuI GTATCC 1 cut(s) 267
BisI GCNGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 312
BmcAI AGTACT 1 cut(s) 1246
Bme1390I CCNGG 4 cut(s) 54, 561, 1065, 1569
BmgT120I GGNCC 4 cut(s) 132, 579, 676, 1663
BmiI GGNNCC 2 cut(s) 134, 1664
BmrFI CCNGG 4 cut(s) 54, 561, 1065, 1569
BmsI GCATC 5 cut(s) 445, 504, 685, 1146, 1684
BpiI GAAGAC 2 cut(s) 470, 612
BpmI CTGGAG 3 cut(s) 1190, 1414, 1599
Bpu10I CCTNAGC 2 cut(s) 1543, 1630
Bsa29I ATCGAT 2 cut(s) 751, 871
BsaAI YACGTR 1 cut(s) 1528
BsaBI GATNNNNATC 1 cut(s) 978
BsaHI GRCGYC 1 cut(s) 1710
BsaJI CCNNGG 1 cut(s) 52
BsaXI ACNNNNNCTCC 4 cut(s) 404, 434, 1157, 1187
Bsc4I CCNNNNNNNGG 6 cut(s) 104, 548, 588, 1070, 1089, 1227
Bse1I ACTGG 3 cut(s) 606, 1221, 1635
Bse3DI GCAATG 5 cut(s) 350, 570, 1562, 1711, 1729
Bse8I GATNNNNATC 1 cut(s) 978
BseBI CCWGG 4 cut(s) 54, 561, 1065, 1569
BseCI ATCGAT 2 cut(s) 751, 871
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 5 cut(s) 340, 460, 1030, 1094, 1699
BseJI GATNNNNATC 1 cut(s) 978
BseLI CCNNNNNNNGG 6 cut(s) 104, 548, 588, 1070, 1089, 1227
BseMI GCAATG 5 cut(s) 350, 570, 1562, 1711, 1729
BseMII CTCAG 3 cut(s) 468, 1557, 1644
BseNI ACTGG 3 cut(s) 606, 1221, 1635
BseRI GAGGAG 2 cut(s) 977, 1019
BseXI GCAGC 1 cut(s) 322
BshFI GGCC 6 cut(s) 133, 581, 592, 677, 1185, 1665
BshVI ATCGAT 2 cut(s) 751, 871
BsiHKAI GWGCWC 2 cut(s) 253, 1554
BslFI GGGAC 2 cut(s) 164, 568
BslI CCNNNNNNNGG 6 cut(s) 104, 548, 588, 1070, 1089, 1227
BsmAI GTCTC 2 cut(s) 111, 591
BsmFI GGGAC 2 cut(s) 164, 568
BsmI GAATGC 1 cut(s) 1046
BsnI GGCC 6 cut(s) 133, 581, 592, 677, 1185, 1665
Bsp1286I GDGCHC 2 cut(s) 253, 1554
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 4 cut(s) 745, 763, 868, 1312
BspANI GGCC 6 cut(s) 133, 581, 592, 677, 1185, 1665
BspCNI CTCAG 3 cut(s) 469, 1556, 1643
BspDI ATCGAT 2 cut(s) 751, 871
BspLI GGNNCC 2 cut(s) 134, 1664
BspPI GGATC 1 cut(s) 1320
BspQI GCTCTTC 1 cut(s) 115
BsrDI GCAATG 5 cut(s) 350, 570, 1562, 1711, 1729
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 3 cut(s) 606, 1221, 1635
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 4 cut(s) 745, 763, 868, 1312
BssNI GRCGYC 1 cut(s) 1710
Bst2UI CCWGG 4 cut(s) 54, 561, 1065, 1569
Bst4CI ACNGT 6 cut(s) 80, 279, 634, 654, 806, 1646
Bst6I CTCTTC 5 cut(s) 115, 150, 258, 292, 1302
BstACI GRCGYC 1 cut(s) 1710
BstAPI GCANNNNNTGC 1 cut(s) 619
BstAUI TGTACA 1 cut(s) 738
BstBAI YACGTR 1 cut(s) 1528
BstC8I GCNNGC 2 cut(s) 106, 700
BstDEI CTNAG 5 cut(s) 477, 850, 1425, 1543, 1630
BstEII GGTNACC 1 cut(s) 935
BstF5I GGATG 5 cut(s) 340, 460, 1030, 1094, 1699
BstKTI GATC 4 cut(s) 748, 766, 871, 1315
BstMAI GTCTC 2 cut(s) 111, 591
BstMBI GATC 4 cut(s) 745, 763, 868, 1312
BstMWI GCNNNNNNNGC 3 cut(s) 619, 1182, 1496
BstNI CCWGG 4 cut(s) 54, 561, 1065, 1569
BstNSI RCATGY 2 cut(s) 1147, 1624
BstPI GGTNACC 1 cut(s) 935
BstSCI CCNGG 4 cut(s) 52, 559, 1063, 1567
BstSFI CTRYAG 1 cut(s) 99
BstSNI TACGTA 1 cut(s) 1528
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 2 cut(s) 470, 612
Bsu15I ATCGAT 2 cut(s) 751, 871
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 6 cut(s) 133, 581, 592, 677, 1185, 1665
BsuTUI ATCGAT 2 cut(s) 751, 871
BtgZI GCGATG 1 cut(s) 1480
BtsCI GGATG 5 cut(s) 340, 460, 1030, 1094, 1699
BtsIMutI CAGTG 6 cut(s) 458, 741, 811, 1132, 1228, 1642
Cac8I GCNNGC 2 cut(s) 106, 700
CaiI CAGNNNCTG 2 cut(s) 98, 619
Cfr13I GGNCC 4 cut(s) 132, 579, 676, 1663
ClaI ATCGAT 2 cut(s) 751, 871
CseI GACGC 1 cut(s) 1699
CsiI ACCWGGT 1 cut(s) 1063
Csp6I GTAC 5 cut(s) 485, 739, 1245, 1429, 1647
CviAII CATG 6 cut(s) 40, 451, 963, 1049, 1144, 1621
CviQI GTAC 5 cut(s) 485, 739, 1245, 1429, 1647
DdeI CTNAG 5 cut(s) 477, 850, 1425, 1543, 1630
DpnI GATC 4 cut(s) 747, 765, 870, 1314
DpnII GATC 4 cut(s) 745, 763, 868, 1312
DraI TTTAAA 1 cut(s) 918
DraIII CACNNNGTG 1 cut(s) 806
DrdI GACNNNNNNGTC 1 cut(s) 933
DseDI GACNNNNNNGTC 1 cut(s) 933
EaeI YGGCCR 1 cut(s) 590
Eam1104I CTCTTC 5 cut(s) 115, 150, 258, 292, 1302
EarI CTCTTC 5 cut(s) 115, 150, 258, 292, 1302
Ecl136II GAGCTC 1 cut(s) 1552
Eco105I TACGTA 1 cut(s) 1528
Eco24I GRGCYC 1 cut(s) 1554
Eco53kI GAGCTC 1 cut(s) 1552
Eco57I CTGAAG 2 cut(s) 165, 482
Eco91I GGTNACC 1 cut(s) 935
EcoICRI GAGCTC 1 cut(s) 1552
EcoO109I RGGNCCY 2 cut(s) 676, 1663
EcoO65I GGTNACC 1 cut(s) 935
EcoRII CCWGG 4 cut(s) 52, 559, 1063, 1567
EcoT38I GRGCYC 1 cut(s) 1554
FaeI CATG 6 cut(s) 43, 454, 966, 1052, 1147, 1624
FaqI GGGAC 2 cut(s) 164, 568
FatI CATG 6 cut(s) 39, 450, 962, 1048, 1143, 1620
FauNDI CATATG 1 cut(s) 884
FbaI TGATCA 1 cut(s) 745
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 311
FokI GGATG 5 cut(s) 347, 467, 1037, 1101, 1706
FriOI GRGCYC 1 cut(s) 1554
Fsp4HI GCNGC 1 cut(s) 311
FspBI CTAG 3 cut(s) 434, 680, 1500
GluI GCNGC 1 cut(s) 311
GsuI CTGGAG 3 cut(s) 1190, 1414, 1599
HaeIII GGCC 6 cut(s) 133, 581, 592, 677, 1185, 1665
HgaI GACGC 1 cut(s) 1699
Hin1I GRCGYC 1 cut(s) 1710
Hin1II CATG 6 cut(s) 43, 454, 966, 1052, 1147, 1624
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 2 cut(s) 1415, 1488
HinfI GANTC 7 cut(s) 266, 556, 769, 967, 1200, 1514, 1603
HphI GGTGA 4 cut(s) 929, 982, 1049, 1418
Hpy166II GTNNAC 4 cut(s) 346, 741, 1478, 1525
Hpy188I TCNGA 7 cut(s) 145, 203, 373, 768, 1207, 1374, 1656
Hpy8I GTNNAC 4 cut(s) 346, 741, 1478, 1525
HpyAV CCTTC 5 cut(s) 140, 552, 783, 1156, 1397
HpyCH4III ACNGT 6 cut(s) 80, 279, 634, 654, 806, 1646
HpyCH4IV ACGT 2 cut(s) 691, 1527
HpyF10VI GCNNNNNNNGC 3 cut(s) 619, 1182, 1496
HpyF3I CTNAG 5 cut(s) 477, 850, 1425, 1543, 1630
HpySE526I ACGT 2 cut(s) 691, 1527
Hsp92I GRCGYC 1 cut(s) 1710
Hsp92II CATG 6 cut(s) 43, 454, 966, 1052, 1147, 1624
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 4 cut(s) 745, 763, 868, 1312
LguI GCTCTTC 1 cut(s) 115
LmnI GCTCC 7 cut(s) 412, 990, 1165, 1395, 1549, 1580, 1672
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 5 cut(s) 445, 504, 685, 1146, 1684
MabI ACCWGGT 1 cut(s) 1063
MaeI CTAG 3 cut(s) 434, 680, 1500
MaeII ACGT 2 cut(s) 691, 1527
MaeIII GTNAC 6 cut(s) 295, 597, 806, 935, 1127, 1436
MalI GATC 4 cut(s) 747, 765, 870, 1314
MboI GATC 4 cut(s) 745, 763, 868, 1312
MfeI CAATTG 1 cut(s) 59
MhlI GDGCHC 2 cut(s) 253, 1554
MlyI GAGTC 3 cut(s) 275, 550, 976
MmeI TCCRAC 4 cut(s) 99, 226, 636, 1631
MseI TTAA 4 cut(s) 183, 917, 1365, 1587
MslI CAYNNNNRTG 6 cut(s) 753, 1053, 1142, 1619, 1692, 1704
MspA1I CMGCKG 1 cut(s) 1599
MspR9I CCNGG 4 cut(s) 54, 561, 1065, 1569
MunI CAATTG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 1046
MvaI CCWGG 4 cut(s) 54, 561, 1065, 1569
MwoI GCNNNNNNNGC 3 cut(s) 619, 1182, 1496
NdeI CATATG 1 cut(s) 884
NdeII GATC 4 cut(s) 745, 763, 868, 1312
NlaIII CATG 6 cut(s) 43, 454, 966, 1052, 1147, 1624
NlaIV GGNNCC 2 cut(s) 134, 1664
NmeAIII GCCGAG 2 cut(s) 109, 568
NmuCI GTSAC 4 cut(s) 806, 935, 1127, 1436
NspI RCATGY 2 cut(s) 1147, 1624
PciI ACATGT 1 cut(s) 1620
PciSI GCTCTTC 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 1195
PctI GAATGC 1 cut(s) 1046
PfeI GAWTC 4 cut(s) 769, 1200, 1514, 1603
PflFI GACNNNGTC 1 cut(s) 812
PkrI GCNGC 1 cut(s) 312
PleI GAGTC 3 cut(s) 274, 550, 975
PpsI GAGTC 3 cut(s) 274, 550, 975
Ppu21I YACGTR 1 cut(s) 1528
PscI ACATGT 1 cut(s) 1620
PsiI TTATAA 1 cut(s) 1241
Psp124BI GAGCTC 1 cut(s) 1554
Psp6I CCWGG 4 cut(s) 52, 559, 1063, 1567
PspEI GGTNACC 1 cut(s) 935
PspGI CCWGG 4 cut(s) 52, 559, 1063, 1567
PspN4I GGNNCC 2 cut(s) 134, 1664
PspPI GGNCC 4 cut(s) 132, 579, 676, 1663
PstNI CAGNNNCTG 2 cut(s) 98, 619
PsyI GACNNNGTC 1 cut(s) 812
PvuII CAGCTG 1 cut(s) 1599
RsaI GTAC 5 cut(s) 486, 740, 1246, 1430, 1648
RsaNI GTAC 5 cut(s) 485, 739, 1245, 1429, 1647
RseI CAYNNNNRTG 6 cut(s) 753, 1053, 1142, 1619, 1692, 1704
SacI GAGCTC 1 cut(s) 1554
SalI GTCGAC 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 4 cut(s) 183, 917, 1365, 1587
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 4 cut(s) 745, 763, 868, 1312
Sau96I GGNCC 4 cut(s) 132, 579, 676, 1663
ScaI AGTACT 1 cut(s) 1246
SchI GAGTC 3 cut(s) 275, 550, 976
ScrFI CCNGG 4 cut(s) 54, 561, 1065, 1569
SduI GDGCHC 2 cut(s) 253, 1554
SexAI ACCWGGT 1 cut(s) 1063
SfaNI GCATC 5 cut(s) 445, 504, 685, 1146, 1684
SfcI CTRYAG 1 cut(s) 99
SmiMI CAYNNNNRTG 6 cut(s) 753, 1053, 1142, 1619, 1692, 1704
SnaBI TACGTA 1 cut(s) 1528
SspMI CTAG 3 cut(s) 434, 680, 1500
SstI GAGCTC 1 cut(s) 1554
StyD4I CCNGG 4 cut(s) 52, 559, 1063, 1567
TaaI ACNGT 6 cut(s) 80, 279, 634, 654, 806, 1646
TaiI ACGT 2 cut(s) 694, 1530
TaqI TCGA 4 cut(s) 345, 751, 778, 871
TatI WGTACW 3 cut(s) 738, 1244, 1428
TfiI GAWTC 4 cut(s) 769, 1200, 1514, 1603
Tru1I TTAA 4 cut(s) 183, 917, 1365, 1587
Tru9I TTAA 4 cut(s) 183, 917, 1365, 1587
TscAI CASTG 6 cut(s) 465, 748, 811, 1132, 1228, 1642
TseFI GTSAC 4 cut(s) 806, 935, 1127, 1436
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 4 cut(s) 806, 935, 1127, 1436
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 6 cut(s) 465, 748, 811, 1132, 1228, 1642
Tth111I GACNNNGTC 1 cut(s) 812
XapI RAATTY 2 cut(s) 194, 315
XbaI TCTAGA 1 cut(s) 433
XceI RCATGY 2 cut(s) 1147, 1624
XcmI CCANNNNNNNNNTGG 2 cut(s) 1104, 1721
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 3 cut(s) 434, 680, 1500
ZrmI AGTACT 1 cut(s) 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.