RLG00000025228

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004773
Physical Location & Seq
Reverse (-)
43160157 .. 43161490
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025228

Sequence Viewer

Length: 891 bp
ATGGCTCGGCCCCTAACATCCGAACTCCGGAGGGGACGAAGAGGTTGTTGGTTCAAAAAGGAGTTATTAAGATTTAAGAGAGTTAAGTTTGTCCGACTAACAGCAAAGGCCCTATATATTCTGTTGGCTATAACAAAAGTACGTGGTGCTCCTCTGGAGGAAGAATCTGGAATACCTTTGCACTCTCCTGTGGTGAATCTATTTATGGAGCAAATTCTCAACGGCAATTGGGATGAAAGTGTCGTCACATTGCCCGGTCAAAACACTGTGAGGGCCAAGTCTCGGCCGAAGCTATTGGAGGAATTGCAAAAGCTGCTCCCACGAATTCCTTCTCAAACAGTGCAGGTTTGCTTTGTTTCATGGAGTCCTAATGACCGTCAGCTCCTCACTTGTGGAATGGAGGTGGTTGTCAGGCGTTGGGATGTCTCTACTGGTGAATGCCTCCATGTTTATGAAAAACCTGGCCTTGGTCTTCTGTCATGTGGATGGTTTCCAGATCGGAAATGGATATTCTCTGGCGTCACTGAAAAGAGTAACTGCACGTGGGAGTTAGAAGGGAAAGAGCTGGAGTGTTGGAAAGTGCAGCGAACTTCAAAAATCTCTGATTTGGAAATAACTAGTGATGAAAAGAAAATATTAAGTACTTGTAGAGAAAATGTTATATTGCTACTTGACATGGAAGCCAAAGTTGACATCCTACTTGGAGAAGATAAACCTATAACTTCGTTTTCTTTATCAATCGATGATAAGTTGTTCGTTAATCTTCTGAACCAAGAAATTCATCTCTGGAGCATAGCAGGTGATGTCAAGCTTGTTGCCAAGTACCAAGGTCACAAACGCACCCAATTTGTCATCAGGTCTTGTTTTGGTGGACCAAGCTTTCATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

297

Amino Acids

33.89

Weight (kDa)

8.97

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 112 - 290 2.4e-15 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 112 - 227 1.1e-08 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 114 - 226 3.3e-07 Aladin seven-bladed propeller
WD40_Prp19 PF24814 119 - 279 3e-06 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 121 - 289 1.2e-08 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 788
Acc36I ACCTGC 2 cut(s) 334, 788
AccIII TCCGGA 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 284
AcsI RAATTY 3 cut(s) 213, 324, 777
AcvI CACGTG 1 cut(s) 543
AcyI GRCGYC 1 cut(s) 519
AfaI GTAC 3 cut(s) 141, 643, 824
AfiI CCNNNNNNNGG 3 cut(s) 27, 282, 467
AgsI TTSAA 2 cut(s) 55, 594
AhlI ACTAGT 1 cut(s) 617
AjnI CCWGG 1 cut(s) 460
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 6 cut(s) 292, 313, 382, 565, 811, 879
AluI AGCT 6 cut(s) 292, 313, 382, 565, 811, 879
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 285, 430
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 5 cut(s) 8, 108, 273, 284, 463
ApeKI GCWGC 2 cut(s) 313, 583
ApoI RAATTY 3 cut(s) 213, 324, 777
Asp700I GAANNNNTTC 1 cut(s) 328
AspS9I GGNCC 4 cut(s) 9, 109, 273, 872
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 3 cut(s) 205, 446, 812
AvaII GGWCC 1 cut(s) 872
BbrPI CACGTG 1 cut(s) 543
BbsI GAAGAC 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 300, 595
BccI CCATC 1 cut(s) 480
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 462
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 285, 430
BcuI ACTAGT 1 cut(s) 617
BfaI CTAG 2 cut(s) 618, 889
BfuAI ACCTGC 2 cut(s) 334, 788
BisI GCNGC 2 cut(s) 314, 584
BlsI GCNGC 2 cut(s) 315, 585
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 2 cut(s) 255, 462
Bme18I GGWCC 1 cut(s) 872
BmgT120I GGNCC 4 cut(s) 9, 109, 273, 872
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 255, 462
BpiI GAAGAC 1 cut(s) 464
BpmI CTGGAG 3 cut(s) 176, 587, 808
BpuMI CCSGG 1 cut(s) 255
Bsa29I ATCGAT 1 cut(s) 741
BsaAI YACGTR 2 cut(s) 143, 543
BsaHI GRCGYC 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 466, 826
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 282, 467
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 2 cut(s) 248, 883
BseAI TCCGGA 1 cut(s) 27
BseBI CCWGG 1 cut(s) 462
BseCI ATCGAT 1 cut(s) 741
BseDI CCNNGG 2 cut(s) 466, 826
BseGI GGATG 5 cut(s) 17, 238, 427, 491, 693
BseLI CCNNNNNNNGG 3 cut(s) 27, 282, 467
BseMI GCAATG 2 cut(s) 248, 883
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 2 cut(s) 141, 374
BseX3I CGGCCG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 300, 595
BsgI GTGCAG 3 cut(s) 362, 523, 602
Bsh1285I CGRYCG 1 cut(s) 287
BshFI GGCC 5 cut(s) 10, 110, 275, 286, 465
BshVI ATCGAT 1 cut(s) 741
BsiEI CGRYCG 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 28, 255
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 3 cut(s) 27, 282, 467
BsmAI GTCTC 2 cut(s) 285, 430
BsmFI GGGAC 1 cut(s) 48
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 5 cut(s) 10, 110, 275, 286, 465
Bsp1286I GDGCHC 1 cut(s) 151
Bsp13I TCCGGA 1 cut(s) 27
Bsp143I GATC 1 cut(s) 496
BspANI GGCC 5 cut(s) 10, 110, 275, 286, 465
BspDI ATCGAT 1 cut(s) 741
BspEI TCCGGA 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 11
BspMI ACCTGC 2 cut(s) 334, 788
BsrDI GCAATG 2 cut(s) 248, 883
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 2 cut(s) 466, 826
BssMI GATC 1 cut(s) 496
BssNI GRCGYC 1 cut(s) 519
BssT1I CCWWGG 2 cut(s) 466, 826
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 3 cut(s) 268, 340, 377
Bst6I CTCTTC 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 519
BstAPI GCANNNNNTGC 1 cut(s) 313
BstBAI YACGTR 2 cut(s) 143, 543
BstF5I GGATG 5 cut(s) 17, 238, 427, 491, 693
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 2 cut(s) 285, 430
BstMBI GATC 1 cut(s) 496
BstMCI CGRYCG 1 cut(s) 287
BstMWI GCNNNNNNNGC 2 cut(s) 313, 885
BstNI CCWGG 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 253, 460
BstV1I GCAGC 2 cut(s) 300, 595
BstV2I GAAGAC 1 cut(s) 464
BstZI CGGCCG 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 741
BsuRI GGCC 5 cut(s) 10, 110, 275, 286, 465
BsuTUI ATCGAT 1 cut(s) 741
BtsCI GGATG 5 cut(s) 17, 238, 427, 491, 693
BtsIMutI CAGTG 3 cut(s) 264, 345, 522
BveI ACCTGC 2 cut(s) 334, 788
Cfr13I GGNCC 4 cut(s) 9, 109, 273, 872
ClaI ATCGAT 1 cut(s) 741
CseI GACGC 1 cut(s) 508
Csp6I GTAC 3 cut(s) 140, 642, 823
CviAII CATG 4 cut(s) 360, 446, 480, 676
CviQI GTAC 3 cut(s) 140, 642, 823
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
EaeI YGGCCR 1 cut(s) 284
EagI CGGCCG 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 284
Eco130I CCWWGG 2 cut(s) 466, 826
Eco47I GGWCC 1 cut(s) 872
Eco52I CGGCCG 1 cut(s) 284
Eco72I CACGTG 1 cut(s) 543
EcoO109I RGGNCCY 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 460
EcoT14I CCWWGG 2 cut(s) 466, 826
ErhI CCWWGG 2 cut(s) 466, 826
FaeI CATG 4 cut(s) 363, 449, 483, 679
FaqI GGGAC 1 cut(s) 48
FatI CATG 4 cut(s) 359, 445, 479, 675
Fnu4HI GCNGC 2 cut(s) 314, 584
FokI GGATG 5 cut(s) 4, 245, 434, 498, 680
Fsp4HI GCNGC 2 cut(s) 314, 584
FspBI CTAG 2 cut(s) 618, 889
GluI GCNGC 2 cut(s) 314, 584
GsuI CTGGAG 3 cut(s) 176, 587, 808
HaeIII GGCC 5 cut(s) 10, 110, 275, 286, 465
HapII CCGG 2 cut(s) 28, 255
HgaI GACGC 1 cut(s) 508
Hin1I GRCGYC 1 cut(s) 519
Hin1II CATG 4 cut(s) 363, 449, 483, 679
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 2 cut(s) 809, 877
HinfI GANTC 3 cut(s) 164, 196, 364
HpaII CCGG 2 cut(s) 28, 255
HphI GGTGA 3 cut(s) 205, 446, 812
Hpy166II GTNNAC 2 cut(s) 691, 872
Hpy188I TCNGA 5 cut(s) 22, 95, 501, 604, 768
Hpy188III TCNNGA 5 cut(s) 28, 155, 168, 494, 787
Hpy8I GTNNAC 2 cut(s) 691, 872
HpyAV CCTTC 2 cut(s) 339, 548
HpyCH4III ACNGT 3 cut(s) 268, 340, 377
HpyCH4IV ACGT 2 cut(s) 142, 542
HpyCH4V TGCA 5 cut(s) 181, 307, 343, 540, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 313, 885
HpySE526I ACGT 2 cut(s) 142, 542
Hsp92I GRCGYC 1 cut(s) 519
Hsp92II CATG 4 cut(s) 363, 449, 483, 679
Kpn2I TCCGGA 1 cut(s) 27
Kzo9I GATC 1 cut(s) 496
LmnI GCTCC 5 cut(s) 154, 208, 321, 387, 789
Lsp1109I GCAGC 2 cut(s) 300, 595
MaeI CTAG 2 cut(s) 618, 889
MaeII ACGT 2 cut(s) 142, 542
MaeIII GTNAC 4 cut(s) 244, 520, 533, 830
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 5 cut(s) 51, 173, 464, 719, 755
MfeI CAATTG 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 6 cut(s) 213, 226, 302, 324, 777, 845
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 2 cut(s) 118, 554
MnlI CCTC 9 cut(s) 24, 35, 151, 162, 264, 292, 394, 395, 452
MroI TCCGGA 1 cut(s) 27
MroXI GAANNNNTTC 1 cut(s) 328
MseI TTAA 5 cut(s) 68, 75, 84, 638, 759
MslI CAYNNNNRTG 2 cut(s) 450, 484
MspI CCGG 2 cut(s) 28, 255
MspR9I CCNGG 2 cut(s) 255, 462
MunI CAATTG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 443
MvaI CCWGG 1 cut(s) 462
MwoI GCNNNNNNNGC 2 cut(s) 313, 885
NciI CCSGG 1 cut(s) 255
NdeII GATC 1 cut(s) 496
NlaIII CATG 4 cut(s) 363, 449, 483, 679
NlaIV GGNNCC 1 cut(s) 11
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 3 cut(s) 244, 520, 830
PaqCI CACCTGC 1 cut(s) 788
PctI GAATGC 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 164, 196
PkrI GCNGC 2 cut(s) 315, 585
PleI GAGTC 1 cut(s) 372
PmaCI CACGTG 1 cut(s) 543
PmlI CACGTG 1 cut(s) 543
PpsI GAGTC 1 cut(s) 372
Ppu21I YACGTR 2 cut(s) 143, 543
Psp6I CCWGG 1 cut(s) 460
PspCI CACGTG 1 cut(s) 543
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 4 cut(s) 9, 109, 273, 872
RsaI GTAC 3 cut(s) 141, 643, 824
RsaNI GTAC 3 cut(s) 140, 642, 823
RseI CAYNNNNRTG 2 cut(s) 450, 484
SaqAI TTAA 5 cut(s) 68, 75, 84, 638, 759
SatI GCNGC 2 cut(s) 314, 584
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 4 cut(s) 9, 109, 273, 872
ScaI AGTACT 1 cut(s) 643
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 2 cut(s) 255, 462
SduI GDGCHC 1 cut(s) 151
SinI GGWCC 1 cut(s) 872
SmiMI CAYNNNNRTG 2 cut(s) 450, 484
SpeI ACTAGT 1 cut(s) 617
Sse9I AATT 6 cut(s) 213, 226, 302, 324, 777, 845
SspI AATATT 1 cut(s) 636
SspMI CTAG 2 cut(s) 618, 889
StyD4I CCNGG 2 cut(s) 253, 460
StyI CCWWGG 2 cut(s) 466, 826
TaaI ACNGT 3 cut(s) 268, 340, 377
TaiI ACGT 2 cut(s) 145, 545
TaqI TCGA 1 cut(s) 741
TasI AATT 6 cut(s) 213, 226, 302, 324, 777, 845
TatI WGTACW 1 cut(s) 641
TfiI GAWTC 2 cut(s) 164, 196
Tru1I TTAA 5 cut(s) 68, 75, 84, 638, 759
Tru9I TTAA 5 cut(s) 68, 75, 84, 638, 759
TscAI CASTG 3 cut(s) 271, 345, 529
TseFI GTSAC 3 cut(s) 244, 520, 830
TseI GCWGC 2 cut(s) 313, 583
Tsp45I GTSAC 3 cut(s) 244, 520, 830
TspDTI ATGAA 6 cut(s) 249, 348, 468, 639, 770, 872
TspRI CASTG 3 cut(s) 271, 345, 529
VpaK11BI GGWCC 1 cut(s) 872
XapI RAATTY 3 cut(s) 213, 324, 777
XcmI CCANNNNNNNNNTGG 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 328
XspI CTAG 2 cut(s) 618, 889
ZrmI AGTACT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.