Rroxscaffold_2G00095690

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004773
Physical Location & Seq
Reverse (-)
17069274 .. 17076034
6761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095690.1

Sequence Viewer

Length: 1737 bp
ATGGGAGGTGTGGGGGATGAAGAACCAGCCTCAAAACGCATGAAAGTATCCCCTGGAGAATTGAGAGGCCTTTCCAACGGTTCATCTTATACAGAGCCTGTAGCTGGCTCTTCAAGAGACTTGATGGCTCGGCCCCTACCATCCGAAGGGGACGAAGAGGTTGTTGGTTCAAAAGGAGTTATTAAGAGAGTTGAGTTTGTTCGACTAATAGCAAAGGCCCTATATTCTCTTGGCTATAACAAAAGTGGTGCTCGTCTGGAGGAAGAGTCTGGAATATCTTTGCACTCTCCTGTGGTAAATCGATTTATGGAGCAAATTCTCAATGGCAATTGGGATGAAAGTGTCATCACGTTGCAGAAAATTGGTCTATCTGATGAAAATATTGCTAAATCTGCTTCCTTTCTGATATTGGAGCAGAAGTTTTTCGAACTTCTAGATGAGAAAAAGGACATGGATGCATTAAAGACATTGAGGACTGAGATTGCACCTCTTTGCATAAATGGTAGCAGAGTTCGTGAGCTTTCATCGTGCATAGTTGCTCCTTCATTTGTTGGGTCCCCCAGTCAAAACACTGTGAGGGCCAAGTCTCGACCAAAGTTATTGGAGGAATTGCAAAAGCTGCTCCCACCAACTGTTATGATACTTGAAAGAAGGTTGGAACATTTAGTTGAACAAGCCCTCGTCTTACAGCGTGATACTTGCATTTTTCACAACTCTTTGAACGAGGACATGTCTTTGTACACTGATCATCAGTGTGGGAGAGATCAGATTCCTTCTCGAACAGTGCAGGTATTACAAGACCACAGTGATGAAGTCTGGTTTGTTCAATTTTCACACAATGGGAAATTCTTGGCTTCATCATCAAGTGATAAATCAGCTATTATATGGGAGGTTGATGTGAATGGCTGGGTTTCATTAAAGCATAGACTAGTTGGTCACCATAAACCGGTTTGCTCTGTTTCATGGAGTCCTAATGACTGTCAGCTCCTCACTTGTGGAGTGGAGGAGGTTGTCAGGCGTTGGGATGTCTCTACTGGTGAATGCCTCCATGTTTATGAAAAACCTGGCCTTGGTCTATTGTCATGTGGATGGTTTCCAGATGGGAAATGGATATTCTCTGGTGTCACTGACAAGAGTATCTGCACGTGGGAGTTAGAAGGGAAAGAGCTGGAGTGTTGGAAAGGGCAGCGAACTTCAAAAATCTCTGATTTGGAAATAACTAGTGATGGAAAGAAAATATTAAGTACTTGTAGAGAAAATGCTATATTGCTACTTGACAGGGAAGCTAAAGTTGACATACTACTTGAAGAGGATAAACCTATAACTTCTTTTTCTTTATCAAGCGATGATAAGTTGTTGTTGGTTAATCTTCTGAACCAAGAAATTCATCTCTGGAGCATAGCAGGTGAAGTCAAGCTTGTTGCCAAGTACCAAGGTCACAAACGCACCCGATTTGTCATCAGGTCTTGTTTTGGTGGACTCGAACAAGCATTCATTGCTAGTGGTAGTGAGGATTCACAGGTTTATGTATGGCATAGATGCTCAGGGGAGCTCATAGAGGCATTGCCAGGACATTCTGGAGCTGTTAATTGTGTCAGCTGGAATCCAAAAAACCCACACATGTTAGCCTCAGCTAGTGACGACCGTACAATTCGGATATGGGGACTAAATGAGATAAAAGTGAAACACAAGGATGCACACTGCAATGGCATCCATTATTGCAATGGGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

578

Amino Acids

64.44

Weight (kDa)

5.95

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH_WDR26 PF23627 53 - 96 9.5e-22 WDR26 Lis-homology motif
WD40_Prp19 PF24814 259 - 388 1.2e-13 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 260 - 389 2.1e-12 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 260 - 420 6e-12 CDC20/Fizzy WD40 domain
Beta-prop_IFT122_1st PF23381 261 - 388 8.6e-09 IFT122 first beta-propeller
Beta-prop_TEP1_2nd PF25047 261 - 350 4.1e-08 TEP-1 second beta-propeller
WD40 PF00400 261 - 296 2.9e-07 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 261 - 385 3.5e-18 WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 263 - 389 1.2e-09 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5 PF25175 265 - 554 3.9e-52 WDR5 beta-propeller domain
WD40_Gbeta PF25391 268 - 511 2.1e-08 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 268 - 426 1.1e-25 THOC3 beta-propeller domain
WDR55 PF24796 309 - 557 1.3e-10 WDR55
Beta-prop_Aladin PF25460 313 - 423 2.3e-10 Aladin seven-bladed propeller
Beta-prop_EML_2 PF23414 320 - 478 6.6e-12 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 366 - 556 1.2e-08 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 428 - 558 8.6e-16 WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 495 - 564 5.5e-07 CAF1B/HIR1 beta-propeller domain
EIF3I PF24805 495 - 558 2.3e-07 EIF3I
WD40_CDC20-Fz PF24807 496 - 560 1e-10 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 496 - 563 3.7e-11 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 496 - 564 9.1e-07 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 498 - 560 1.1e-14 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 511 - 571 1.6e-08 WDR5 beta-propeller domain
WD40 PF00400 517 - 554 8.7e-10 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1394
AasI GACNNNNNNGTC 1 cut(s) 933
Acc36I ACCTGC 2 cut(s) 778, 1394
AcsI RAATTY 3 cut(s) 315, 845, 1383
AcvI CACGTG 1 cut(s) 1146
AfaI GTAC 4 cut(s) 740, 1246, 1430, 1648
AfiI CCNNNNNNNGG 4 cut(s) 104, 146, 946, 1070
AflIII ACRYGT 2 cut(s) 729, 1620
AgeI ACCGGT 1 cut(s) 946
AgsI TTSAA 8 cut(s) 114, 171, 647, 671, 721, 827, 1197, 1307
AhlI ACTAGT 2 cut(s) 928, 1220
AjnI CCWGG 3 cut(s) 52, 1063, 1567
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
Alw21I GWGCWC 2 cut(s) 253, 1554
Alw26I GTCTC 3 cut(s) 111, 591, 1033
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 5 cut(s) 67, 131, 216, 579, 1066
ApeKI GCWGC 2 cut(s) 619, 1186
ApoI RAATTY 3 cut(s) 315, 845, 1383
AsiGI ACCGGT 1 cut(s) 946
Asp700I GAANNNNTTC 1 cut(s) 422
AspS9I GGNCC 4 cut(s) 132, 217, 555, 579
AsuHPI GGTGA 3 cut(s) 929, 1049, 1418
AsuII TTCGAA 1 cut(s) 426
AvaII GGWCC 1 cut(s) 555
BaeI ACNNNNGTAYC 2 cut(s) 1120, 1153
BanII GRGCYC 1 cut(s) 1554
BbrPI CACGTG 1 cut(s) 1146
Bbv12I GWGCWC 2 cut(s) 253, 1554
BbvCI CCTCAGC 1 cut(s) 1630
BbvI GCAGC 2 cut(s) 606, 1198
BccI CCATC 5 cut(s) 118, 148, 1083, 1094, 1220
BciT130I CCWGG 3 cut(s) 54, 1065, 1569
BciVI GTATCC 1 cut(s) 58
BclI TGATCA 1 cut(s) 745
BcoDI GTCTC 3 cut(s) 111, 591, 1033
BcuI ACTAGT 2 cut(s) 928, 1220
BfaI CTAG 5 cut(s) 434, 929, 1221, 1500, 1635
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 2 cut(s) 778, 1394
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 2 cut(s) 620, 1187
BlsI GCNGC 2 cut(s) 621, 1188
BmcAI AGTACT 1 cut(s) 1246
Bme1390I CCNGG 3 cut(s) 54, 1065, 1569
Bme18I GGWCC 1 cut(s) 555
BmgT120I GGNCC 4 cut(s) 132, 217, 555, 579
BmiI GGNNCC 3 cut(s) 134, 556, 557
BmrFI CCNGG 3 cut(s) 54, 1065, 1569
BmrI ACTGGG 1 cut(s) 555
BmsI GCATC 4 cut(s) 445, 1529, 1684, 1719
BmuI ACTGGG 1 cut(s) 555
BpmI CTGGAG 5 cut(s) 75, 278, 1190, 1414, 1599
Bpu10I CCTNAGC 2 cut(s) 1543, 1630
Bpu14I TTCGAA 1 cut(s) 426
Bsa29I ATCGAT 1 cut(s) 301
BsaAI YACGTR 1 cut(s) 1146
BsaJI CCNNGG 3 cut(s) 52, 1069, 1432
BsaWI WCCGGW 1 cut(s) 946
BsaXI ACNNNNNCTCC 4 cut(s) 251, 281, 404, 434
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 146, 946, 1070
Bse118I RCCGGY 1 cut(s) 946
Bse1I ACTGG 2 cut(s) 561, 1039
Bse3DI GCAATG 4 cut(s) 1494, 1562, 1711, 1729
BseBI CCWGG 3 cut(s) 54, 1065, 1569
BseCI ATCGAT 1 cut(s) 301
BseDI CCNNGG 3 cut(s) 52, 1069, 1432
BseGI GGATG 8 cut(s) 22, 140, 340, 460, 1030, 1094, 1699, 1710
BseLI CCNNNNNNNGG 4 cut(s) 104, 146, 946, 1070
BseMI GCAATG 4 cut(s) 1494, 1562, 1711, 1729
BseMII CTCAG 3 cut(s) 468, 1557, 1644
BseNI ACTGG 2 cut(s) 561, 1039
BseRI GAGGAG 2 cut(s) 977, 1019
BseXI GCAGC 2 cut(s) 606, 1198
BseYI CCCAGC 1 cut(s) 906
BsgI GTGCAG 2 cut(s) 806, 1126
Bsh1285I CGRYCG 1 cut(s) 1645
BshFI GGCC 5 cut(s) 69, 133, 218, 581, 1068
BshTI ACCGGT 1 cut(s) 946
BshVI ATCGAT 1 cut(s) 301
BsiEI CGRYCG 1 cut(s) 1645
BsiHKAI GWGCWC 2 cut(s) 253, 1554
BsiSI CCGG 1 cut(s) 947
BslFI GGGAC 3 cut(s) 164, 541, 1677
BslI CCNNNNNNNGG 4 cut(s) 104, 146, 946, 1070
BsmAI GTCTC 3 cut(s) 111, 591, 1033
BsmFI GGGAC 3 cut(s) 164, 541, 1677
BsmI GAATGC 2 cut(s) 1046, 1490
BsnI GGCC 5 cut(s) 69, 133, 218, 581, 1068
Bsp119I TTCGAA 1 cut(s) 426
Bsp1286I GDGCHC 2 cut(s) 253, 1554
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 2 cut(s) 745, 763
BspANI GGCC 5 cut(s) 69, 133, 218, 581, 1068
BspCNI CTCAG 3 cut(s) 469, 1556, 1643
BspDI ATCGAT 1 cut(s) 301
BspLI GGNNCC 3 cut(s) 134, 556, 557
BspMI ACCTGC 2 cut(s) 778, 1394
BspQI GCTCTTC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 426
BsrDI GCAATG 4 cut(s) 1494, 1562, 1711, 1729
BsrFI RCCGGY 1 cut(s) 946
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 2 cut(s) 561, 1039
BssAI RCCGGY 1 cut(s) 946
BssECI CCNNGG 3 cut(s) 52, 1069, 1432
BssMI GATC 2 cut(s) 745, 763
BssT1I CCWWGG 2 cut(s) 1069, 1432
Bst2UI CCWGG 3 cut(s) 54, 1065, 1569
Bst4CI ACNGT 7 cut(s) 80, 574, 634, 784, 806, 980, 1646
Bst6I CTCTTC 4 cut(s) 115, 150, 258, 1302
BstAPI GCANNNNNTGC 2 cut(s) 619, 1496
BstAUI TGTACA 1 cut(s) 738
BstBAI YACGTR 1 cut(s) 1146
BstBI TTCGAA 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 477, 1543, 1630
BstEII GGTNACC 1 cut(s) 935
BstF5I GGATG 8 cut(s) 22, 140, 340, 460, 1030, 1094, 1699, 1710
BstKTI GATC 2 cut(s) 748, 766
BstMAI GTCTC 3 cut(s) 111, 591, 1033
BstMBI GATC 2 cut(s) 745, 763
BstMCI CGRYCG 1 cut(s) 1645
BstMWI GCNNNNNNNGC 3 cut(s) 392, 619, 1496
BstNI CCWGG 3 cut(s) 54, 1065, 1569
BstNSI RCATGY 2 cut(s) 733, 1624
BstPI GGTNACC 1 cut(s) 935
BstSCI CCNGG 3 cut(s) 52, 1063, 1567
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 606, 1198
Bsu15I ATCGAT 1 cut(s) 301
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 5 cut(s) 69, 133, 218, 581, 1068
BsuTUI ATCGAT 1 cut(s) 301
BtgZI GCGATG 1 cut(s) 1359
BtsCI GGATG 8 cut(s) 22, 140, 340, 460, 1030, 1094, 1699, 1710
BtsI GCAGTG 1 cut(s) 1699
BtsIMutI CAGTG 7 cut(s) 570, 741, 758, 789, 811, 1125, 1699
BveI ACCTGC 2 cut(s) 778, 1394
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 946
Cfr13I GGNCC 4 cut(s) 132, 217, 555, 579
ClaI ATCGAT 1 cut(s) 301
Csp6I GTAC 4 cut(s) 739, 1245, 1429, 1647
CspAI ACCGGT 1 cut(s) 946
CviAII CATG 7 cut(s) 40, 451, 730, 963, 1049, 1083, 1621
CviQI GTAC 4 cut(s) 739, 1245, 1429, 1647
DdeI CTNAG 3 cut(s) 477, 1543, 1630
DpnI GATC 2 cut(s) 747, 765
DpnII GATC 2 cut(s) 745, 763
DrdI GACNNNNNNGTC 1 cut(s) 933
DseDI GACNNNNNNGTC 1 cut(s) 933
Eam1104I CTCTTC 4 cut(s) 115, 150, 258, 1302
EarI CTCTTC 4 cut(s) 115, 150, 258, 1302
Ecl136II GAGCTC 1 cut(s) 1552
Eco130I CCWWGG 2 cut(s) 1069, 1432
Eco147I AGGCCT 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 1554
Eco47I GGWCC 1 cut(s) 555
Eco53kI GAGCTC 1 cut(s) 1552
Eco72I CACGTG 1 cut(s) 1146
Eco91I GGTNACC 1 cut(s) 935
EcoICRI GAGCTC 1 cut(s) 1552
EcoO109I RGGNCCY 2 cut(s) 217, 555
EcoO65I GGTNACC 1 cut(s) 935
EcoRII CCWGG 3 cut(s) 52, 1063, 1567
EcoT14I CCWWGG 2 cut(s) 1069, 1432
EcoT22I ATGCAT 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 1554
ErhI CCWWGG 2 cut(s) 1069, 1432
FaeI CATG 7 cut(s) 43, 454, 733, 966, 1052, 1086, 1624
FalI AAGNNNNNCTT 2 cut(s) 1401, 1433
FaqI GGGAC 3 cut(s) 164, 541, 1677
FatI CATG 7 cut(s) 39, 450, 729, 962, 1048, 1082, 1620
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 2 cut(s) 620, 1187
FokI GGATG 8 cut(s) 29, 127, 347, 467, 1037, 1101, 1697, 1706
FriOI GRGCYC 1 cut(s) 1554
Fsp4HI GCNGC 2 cut(s) 620, 1187
FspBI CTAG 5 cut(s) 434, 929, 1221, 1500, 1635
GluI GCNGC 2 cut(s) 620, 1187
GsaI CCCAGC 1 cut(s) 910
GsuI CTGGAG 5 cut(s) 75, 278, 1190, 1414, 1599
HaeIII GGCC 5 cut(s) 69, 133, 218, 581, 1068
HapII CCGG 1 cut(s) 947
Hin1II CATG 7 cut(s) 43, 454, 733, 966, 1052, 1086, 1624
HincII GTYRAC 1 cut(s) 1294
HindII GTYRAC 1 cut(s) 1294
HindIII AAGCTT 1 cut(s) 1415
HinfI GANTC 6 cut(s) 266, 769, 967, 1479, 1514, 1603
HpaII CCGG 1 cut(s) 947
HphI GGTGA 3 cut(s) 929, 1049, 1418
Hpy166II GTNNAC 3 cut(s) 741, 1294, 1478
Hpy188I TCNGA 7 cut(s) 145, 373, 405, 768, 1207, 1374, 1656
Hpy8I GTNNAC 3 cut(s) 741, 1294, 1478
HpyAV CCTTC 5 cut(s) 140, 552, 645, 783, 1151
HpyCH4III ACNGT 7 cut(s) 80, 574, 634, 784, 806, 980, 1646
HpyCH4IV ACGT 2 cut(s) 350, 1145
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 619, 1496
HpyF3I CTNAG 3 cut(s) 477, 1543, 1630
HpySE526I ACGT 2 cut(s) 350, 1145
Hsp92II CATG 7 cut(s) 43, 454, 733, 966, 1052, 1086, 1624
KflI GGGWCCC 1 cut(s) 555
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 2 cut(s) 745, 763
LguI GCTCTTC 1 cut(s) 115
LmnI GCTCC 8 cut(s) 310, 412, 544, 627, 990, 1395, 1549, 1580
Lsp1109I GCAGC 2 cut(s) 606, 1198
LweI GCATC 4 cut(s) 445, 1529, 1684, 1719
MaeI CTAG 5 cut(s) 434, 929, 1221, 1500, 1635
MaeII ACGT 2 cut(s) 350, 1145
MaeIII GTNAC 4 cut(s) 935, 1123, 1436, 1637
MalI GATC 2 cut(s) 747, 765
MboI GATC 2 cut(s) 745, 763
MboII GAAGA 6 cut(s) 32, 102, 167, 275, 1319, 1361
MfeI CAATTG 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 253, 1554
MlyI GAGTC 3 cut(s) 275, 976, 1473
MmeI TCCRAC 3 cut(s) 99, 636, 1157
Mph1103I ATGCAT 1 cut(s) 460
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 6 cut(s) 183, 461, 917, 1241, 1365, 1587
MslI CAYNNNNRTG 6 cut(s) 753, 807, 1053, 1087, 1692, 1704
MspA1I CMGCKG 1 cut(s) 1599
MspI CCGG 1 cut(s) 947
MspR9I CCNGG 3 cut(s) 54, 1065, 1569
MunI CAATTG 1 cut(s) 328
Mva1269I GAATGC 2 cut(s) 1046, 1490
MvaI CCWGG 3 cut(s) 54, 1065, 1569
MwoI GCNNNNNNNGC 3 cut(s) 392, 619, 1496
NdeII GATC 2 cut(s) 745, 763
NlaIII CATG 7 cut(s) 43, 454, 733, 966, 1052, 1086, 1624
NlaIV GGNNCC 3 cut(s) 134, 556, 557
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 4 cut(s) 935, 1123, 1436, 1637
NsiI ATGCAT 1 cut(s) 460
NspI RCATGY 2 cut(s) 733, 1624
NspV TTCGAA 1 cut(s) 426
PaqCI CACCTGC 1 cut(s) 1394
PceI AGGCCT 1 cut(s) 69
PciI ACATGT 2 cut(s) 729, 1620
PciSI GCTCTTC 1 cut(s) 115
PctI GAATGC 2 cut(s) 1046, 1490
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 3 cut(s) 769, 1514, 1603
PinAI ACCGGT 1 cut(s) 946
PkrI GCNGC 2 cut(s) 621, 1188
PleI GAGTC 3 cut(s) 274, 975, 1473
PmaCI CACGTG 1 cut(s) 1146
PmlI CACGTG 1 cut(s) 1146
PpsI GAGTC 3 cut(s) 274, 975, 1473
Ppu21I YACGTR 1 cut(s) 1146
PpuMI RGGWCCY 1 cut(s) 555
PscI ACATGT 2 cut(s) 729, 1620
Psp124BI GAGCTC 1 cut(s) 1554
Psp5II RGGWCCY 1 cut(s) 555
Psp6I CCWGG 3 cut(s) 52, 1063, 1567
PspCI CACGTG 1 cut(s) 1146
PspEI GGTNACC 1 cut(s) 935
PspFI CCCAGC 1 cut(s) 906
PspGI CCWGG 3 cut(s) 52, 1063, 1567
PspN4I GGNNCC 3 cut(s) 134, 556, 557
PspPI GGNCC 4 cut(s) 132, 217, 555, 579
PspPPI RGGWCCY 1 cut(s) 555
PstNI CAGNNNCTG 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 1599
RsaI GTAC 4 cut(s) 740, 1246, 1430, 1648
RsaNI GTAC 4 cut(s) 739, 1245, 1429, 1647
RseI CAYNNNNRTG 6 cut(s) 753, 807, 1053, 1087, 1692, 1704
SacI GAGCTC 1 cut(s) 1554
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 6 cut(s) 183, 461, 917, 1241, 1365, 1587
SatI GCNGC 2 cut(s) 620, 1187
Sau3AI GATC 2 cut(s) 745, 763
Sau96I GGNCC 4 cut(s) 132, 217, 555, 579
ScaI AGTACT 1 cut(s) 1246
SchI GAGTC 3 cut(s) 275, 976, 1473
ScrFI CCNGG 3 cut(s) 54, 1065, 1569
SduI GDGCHC 2 cut(s) 253, 1554
SfaNI GCATC 4 cut(s) 445, 1529, 1684, 1719
SfcI CTRYAG 1 cut(s) 99
SfuI TTCGAA 1 cut(s) 426
SinI GGWCC 1 cut(s) 555
SmiMI CAYNNNNRTG 6 cut(s) 753, 807, 1053, 1087, 1692, 1704
SpeI ACTAGT 2 cut(s) 928, 1220
SseBI AGGCCT 1 cut(s) 69
SspI AATATT 2 cut(s) 382, 1239
SspMI CTAG 5 cut(s) 434, 929, 1221, 1500, 1635
SstI GAGCTC 1 cut(s) 1554
StuI AGGCCT 1 cut(s) 69
StyD4I CCNGG 3 cut(s) 52, 1063, 1567
StyI CCWWGG 2 cut(s) 1069, 1432
TaaI ACNGT 7 cut(s) 80, 574, 634, 784, 806, 980, 1646
TaiI ACGT 2 cut(s) 353, 1148
TaqI TCGA 6 cut(s) 202, 301, 426, 589, 778, 1482
TatI WGTACW 2 cut(s) 738, 1244
TfiI GAWTC 3 cut(s) 769, 1514, 1603
Tru1I TTAA 6 cut(s) 183, 461, 917, 1241, 1365, 1587
Tru9I TTAA 6 cut(s) 183, 461, 917, 1241, 1365, 1587
TscAI CASTG 7 cut(s) 577, 748, 758, 789, 811, 1132, 1706
TseFI GTSAC 4 cut(s) 935, 1123, 1436, 1637
TseI GCWGC 2 cut(s) 619, 1186
Tsp45I GTSAC 4 cut(s) 935, 1123, 1436, 1637
TspRI CASTG 7 cut(s) 577, 748, 758, 789, 811, 1132, 1706
VpaK11BI GGWCC 1 cut(s) 555
XapI RAATTY 3 cut(s) 315, 845, 1383
XbaI TCTAGA 1 cut(s) 433
XceI RCATGY 2 cut(s) 733, 1624
XcmI CCANNNNNNNNNTGG 2 cut(s) 1104, 1721
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 5 cut(s) 434, 929, 1221, 1500, 1635
ZrmI AGTACT 1 cut(s) 1246
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.