Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013129

Physical Location & Seq

Genomic Coordinates Reverse (-)

30775097 .. 30777093

Gene Structure 1997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCTCAACTGCATGCTTTTTGCACCACCATGCACTCACTACTTCCACTGCCGCTAGGTCTTCCTCGTCCCAGCGCCAAGTGGTGAGCATCAAGCCTAACCAGGTTGTGATCTGCAGGGCTCAGAAGCAGTCTGTCCAGGAGGAAGACGGCGGCGCTATCTCTCGCCGTTTGGCTCTTACCCTCCTCATTGGTGGCGCTGCCCTTAGCACCAAGGTTGCACCTGCTGATGCTGCCTACGGTGAATCTGCCAATATTTTCGGAAAGCCGAAGACGTCAACAGATTTCTTGCCATATGCTGGAGAAGGGTTCAAGGTGTCTATCCCTGCAAAGTGGAACCCCAGCAAAGAGGTGGAGTTCCCTGGTCAAGTTCTGAGATACGAGGACAACTTCGATGTTACCAGCAACTTGACTGTCACAATTAACCCAACTGACAAGAAGTCCATCACCGACTTTGGTAGCCCTGAACAATTCCTCACCCAGGTGGACTATTTGCTAGGCAAACAAGCCTACTTCGGAAAGACTGATTCTGAGGGAGGTTTCGACTCGGGTGCTGTGGCCACAGCCAACATATTGGAATCTTCAACCCAAACAATTGATGGCAAACCATACTACTTCATCTCTGTGTTAACAAGGACAGCTGATGGAGATGAAGGTGGTAAGCACCAACTGATCACTGCCACCGTGAAGGACGGCAAGCTTTACATCTGCAAGGCCCAAGCTGGAGACAAGAGGTGGTTCAAGGGAGCAAAGAAGTTCGTCGAGAACAGTGTAACCTCTTTCAGTGTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0019898 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

265

Amino Acids

28.37

Weight (kDa)

8.3

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	95 - 263	2.6e-38	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06680 AT1G06680
fragaria_vesca	FvH4_6g38900
malus_domestica	MD09G1146300.v1.1 MD17G1132900.v1.1
prunus_persica	Prupe.3G179400_v2.0.a1
pyrus_communis	pycom09g06660 pycom17g12650
rosa_chinensis	RchiOBHm_Chr2g0152481
rosa_laevigata	RLG00000020637
rosa_multiflora	Rmu_co8478837.1_g000001 Rmu_sc0005366.1_g000010
rosa_roxburghii	Rroxscaffold_2G00095680
rosa_rugosa	Rorug02G0433100
rosa_samantha	Rh2AG494900 Rh2BG507100 Rh2DG518300
rosa_wichuraiana	Rw2G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
AatII	GACGTC	1 cut(s)	278
Acc36I	ACCTGC	1 cut(s)	232
AccB7I	CCANNNNNTGG	1 cut(s)	299
AciI	CCGC	2 cut(s)	54, 153
AcoI	YGGCCR	1 cut(s)	558
AcyI	GRCGYC	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	299, 481
AgsI	TTSAA	3 cut(s)	313, 585, 742
AhdI	GACNNNNNGTC	1 cut(s)	439
AjnI	CCWGG	4 cut(s)	102, 138, 361, 480
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	3 cut(s)	641, 700, 722
AluI	AGCT	3 cut(s)	641, 700, 722
Alw26I	GTCTC	1 cut(s)	720
Ama87I	CYCGRG	1 cut(s)	547
AoxI	GGCC	3 cut(s)	3, 558, 714
ApeKI	GCWGC	2 cut(s)	200, 233
AspLEI	GCGC	3 cut(s)	78, 158, 200
AspS9I	GGNCC	1 cut(s)	715
AsuHPI	GGTGA	4 cut(s)	97, 254, 439, 469
AvaI	CYCGRG	1 cut(s)	547
BalI	TGGCCA	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	124
BbsI	GAAGAC	3 cut(s)	54, 153, 278
BbvI	GCAGC	2 cut(s)	187, 220
BccI	CCATC	3 cut(s)	452, 593, 638
BceAI	ACGGC	3 cut(s)	153, 166, 709
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	4 cut(s)	104, 140, 363, 482
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	2 cut(s)	57, 497
BfmI	CTRYAG	1 cut(s)	115
BfoI	RGCGCY	3 cut(s)	79, 159, 201
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	4 cut(s)	54, 154, 201, 234
BlsI	GCNGC	4 cut(s)	55, 155, 202, 235
Bme1390I	CCNGG	4 cut(s)	104, 140, 363, 482
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	4 cut(s)	104, 140, 363, 482
BmsI	GCATC	2 cut(s)	99, 220
BpiI	GAAGAC	3 cut(s)	54, 153, 278
BpmI	CTGGAG	2 cut(s)	321, 744
Bpu10I	CCTNAGC	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	3 cut(s)	213, 361, 480
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 481
BseBI	CCWGG	4 cut(s)	104, 140, 363, 482
BseDI	CCNNGG	3 cut(s)	213, 361, 480
BseLI	CCNNNNNNNGG	2 cut(s)	299, 481
BseMII	CTCAG	3 cut(s)	137, 365, 522
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	187, 220
BseYI	CCCAGC	2 cut(s)	72, 341
BshFI	GGCC	3 cut(s)	5, 560, 716
BsiHKCI	CYCGRG	1 cut(s)	547
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	299, 481
BsmAI	GTCTC	1 cut(s)	720
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	3 cut(s)	5, 560, 716
BsoBI	CYCGRG	1 cut(s)	547
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	111, 672
BspACI	CCGC	2 cut(s)	54, 153
BspANI	GGCC	3 cut(s)	5, 560, 716
BspCNI	CTCAG	3 cut(s)	136, 366, 523
BspLI	GGNNCC	1 cut(s)	338
BspMAI	CTGCAG	1 cut(s)	119
BspMI	ACCTGC	1 cut(s)	232
BssECI	CCNNGG	3 cut(s)	213, 361, 480
BssMI	GATC	2 cut(s)	111, 672
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	4 cut(s)	104, 140, 363, 482
Bst4CI	ACNGT	4 cut(s)	242, 415, 685, 770
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	16, 698
BstDEI	CTNAG	4 cut(s)	123, 206, 374, 531
BstENI	CCTNNNNNAGG	1 cut(s)	479
BstH2I	RGCGCY	3 cut(s)	79, 159, 201
BstHHI	GCGC	3 cut(s)	78, 158, 200
BstKTI	GATC	2 cut(s)	114, 675
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	2 cut(s)	111, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 233
BstNI	CCWGG	4 cut(s)	104, 140, 363, 482
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	4 cut(s)	102, 138, 361, 480
BstSFI	CTRYAG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	187, 220
BstV2I	GAAGAC	3 cut(s)	54, 153, 278
BstXI	CCANNNNNNTGG	1 cut(s)	574
BsuRI	GGCC	3 cut(s)	5, 560, 716
BtsI	GCAGTG	2 cut(s)	48, 675
BtsIMutI	CAGTG	4 cut(s)	48, 675, 775, 790
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	16, 698
CfoI	GCGC	3 cut(s)	78, 158, 200
Cfr13I	GGNCC	1 cut(s)	715
CsiI	ACCWGGT	1 cut(s)	102
CviAII	CATG	2 cut(s)	15, 32
DdeI	CTNAG	4 cut(s)	123, 206, 374, 531
DpnI	GATC	2 cut(s)	113, 674
DpnII	GATC	2 cut(s)	111, 672
DriI	GACNNNNNGTC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	558
Eam1105I	GACNNNNNGTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	547
EcoNI	CCTNNNNNAGG	1 cut(s)	479
EcoRII	CCWGG	4 cut(s)	102, 138, 361, 480
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	2 cut(s)	18, 35
FaiI	YATR	6 cut(s)	16, 33, 295, 297, 572, 610
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	2 cut(s)	14, 31
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	4 cut(s)	54, 154, 201, 234
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	4 cut(s)	54, 154, 201, 234
FspBI	CTAG	2 cut(s)	57, 497
GlaI	GCGC	3 cut(s)	77, 157, 199
GluI	GCNGC	4 cut(s)	54, 154, 201, 234
GsaI	CCCAGC	2 cut(s)	76, 345
GsuI	CTGGAG	2 cut(s)	321, 744
HaeII	RGCGCY	3 cut(s)	79, 159, 201
HaeIII	GGCC	3 cut(s)	5, 560, 716
HhaI	GCGC	3 cut(s)	78, 158, 200
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	18, 35
Hin6I	GCGC	3 cut(s)	76, 156, 198
HinP1I	GCGC	3 cut(s)	76, 156, 198
HincII	GTYRAC	2 cut(s)	279, 630
HindII	GTYRAC	2 cut(s)	279, 630
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	4 cut(s)	245, 527, 545, 578
HpaI	GTTAAC	1 cut(s)	630
HphI	GGTGA	4 cut(s)	97, 254, 439, 469
Hpy166II	GTNNAC	3 cut(s)	279, 487, 630
Hpy188I	TCNGA	5 cut(s)	126, 263, 375, 518, 532
Hpy188III	TCNNGA	1 cut(s)	763
Hpy8I	GTNNAC	3 cut(s)	279, 487, 630
Hpy99I	CGWCG	1 cut(s)	764
HpyAV	CCTTC	3 cut(s)	299, 647, 682
HpyCH4III	ACNGT	4 cut(s)	242, 415, 685, 770
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	7 cut(s)	14, 25, 35, 117, 221, 329, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 233
HpyF3I	CTNAG	4 cut(s)	123, 206, 374, 531
HpySE526I	ACGT	1 cut(s)	275
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	18, 35
HspAI	GCGC	3 cut(s)	76, 156, 198
Ksp22I	TGATCA	1 cut(s)	672
KspAI	GTTAAC	1 cut(s)	630
Kzo9I	GATC	2 cut(s)	111, 672
LmnI	GCTCC	1 cut(s)	746
Lsp1109I	GCAGC	2 cut(s)	187, 220
LweI	GCATC	2 cut(s)	99, 220
MabI	ACCWGGT	1 cut(s)	102
MaeI	CTAG	2 cut(s)	57, 497
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	3 cut(s)	397, 415, 772
MalI	GATC	2 cut(s)	113, 674
MboI	GATC	2 cut(s)	111, 672
MboII	GAAGA	4 cut(s)	54, 158, 283, 573
MfeI	CAATTG	1 cut(s)	594
MhlI	GDGCHC	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	3 cut(s)	420, 470, 594
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	1 cut(s)	539
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	2 cut(s)	423, 629
MslI	CAYNNNNRTG	3 cut(s)	30, 482, 623
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	641
MspR9I	CCNGG	4 cut(s)	104, 140, 363, 482
MunI	CAATTG	1 cut(s)	594
MvaI	CCWGG	4 cut(s)	104, 140, 363, 482
MwoI	GCNNNNNNNGC	2 cut(s)	11, 233
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	2 cut(s)	111, 672
NlaIII	CATG	2 cut(s)	18, 35
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	18
OliI	CACNNNNGTG	1 cut(s)	482
PaeI	GCATGC	1 cut(s)	18
PaqCI	CACCTGC	1 cut(s)	232
PfeI	GAWTC	3 cut(s)	245, 527, 578
PflMI	CCANNNNNTGG	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	55, 155, 202, 235
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
Psp6I	CCWGG	4 cut(s)	102, 138, 361, 480
PspFI	CCCAGC	2 cut(s)	72, 341
PspGI	CCWGG	4 cut(s)	102, 138, 361, 480
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	715
PstI	CTGCAG	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	641
RseI	CAYNNNNRTG	3 cut(s)	30, 482, 623
SaqAI	TTAA	2 cut(s)	423, 629
SatI	GCNGC	4 cut(s)	54, 154, 201, 234
Sau3AI	GATC	2 cut(s)	111, 672
Sau96I	GGNCC	1 cut(s)	715
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	4 cut(s)	104, 140, 363, 482
SduI	GDGCHC	1 cut(s)	124
SexAI	ACCWGGT	1 cut(s)	102
SfaNI	GCATC	2 cut(s)	99, 220
SfcI	CTRYAG	1 cut(s)	115
SmiMI	CAYNNNNRTG	3 cut(s)	30, 482, 623
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	3 cut(s)	420, 470, 594
SsiI	CCGC	2 cut(s)	54, 153
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	2 cut(s)	57, 497
StyD4I	CCNGG	4 cut(s)	102, 138, 361, 480
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	4 cut(s)	242, 415, 685, 770
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	3 cut(s)	393, 543, 762
TasI	AATT	3 cut(s)	420, 470, 594
TauI	GCSGC	2 cut(s)	56, 156
TfiI	GAWTC	3 cut(s)	245, 527, 578
Tru1I	TTAA	2 cut(s)	423, 629
Tru9I	TTAA	2 cut(s)	423, 629
TscAI	CASTG	4 cut(s)	55, 682, 775, 790
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	2 cut(s)	200, 233
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	607, 666
TspRI	CASTG	4 cut(s)	55, 682, 775, 790
Van91I	CCANNNNNTGG	1 cut(s)	299
XagI	CCTNNNNNAGG	1 cut(s)	479
XceI	RCATGY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	2 cut(s)	349, 596
XspI	CTAG	2 cut(s)	57, 497
ZraI	GACGTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.