AT1G08315

Armadillo/beta-catenin-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014500
Physical Location & Seq
Reverse (-)
2620335 .. 2621545
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08315.1

Sequence Viewer

Length: 978 bp
ATGGAAACAGCAAAGCGTAGAACCATGTCAACAATCGTCTCCAGGCTTAGCTCTGTCTCTGAGCAAACCAGAGCCGCTGCTTTAGCTGAGCTTAGACTCATCTCCAAACAAGATCCTGATAGCCGTCTAATCATCGCCGACGCCGGAGCTATTCCGTACCTCGCCGAGACTCTTTACTCGTCGTCACACTCTTCTCAGGAAAACGCCGCCGCGACTCTCCTCAACCTCTCAATCACCTCTCGCGAACCCCTAATGTCTTCACGCGGCTTACTCGACGCGCTTTCTCACGCGCTTCGTCATCACGACACCACCACTTCCCCCGCCGCGGTTCAATCCTCCGCCGCTACGATTTATAGCCTTTTGATAGCCGAAGAGTCTTACCGACCTATCATCGGATCTAAGCGCGATATCATCTTCTCCCTCATTCACATCATTAGATATCCAGATTCGCATCCTCGATCGATCAAAGACTCGCTCAAGGCACTCTTCGCGATCGCTCTGTATCCGATGAACCGATCGACGATGATCTCTCTCGGCGCGATTCCGGCTCTGTTTTCGCTGATCGTGAAAGATTCGCGGTGCGGGATCGTTGAAGATGCGACGGCGGTTATGGCGCAAGTCGCTGGATGCGAAGATAGCGAGGACGGGATGAGGAGAGTTTCAGGAGCTAACGTTCTAGCGGATCTGTTAGATCCTTGCACTGGTTCGAGCCTACGGATCAAAGAGAACTCCGTTGGTGCGCTTTTGAATCTGGCGAGATGTGGAGGAGCTGCAGCGAGGTCTGAAGTTGCGGCGGCGGTTGCGTCTGGTGCTGATGAAGGAGCCATGGAAGGGATCGTGTATGTAGCTGAGAATGGTAGTCTGAAAGGAAGGAAGAAAGCGGTTGATCTGTTGAAGCTCGTTGTCTCCGGTAATGGCGGCGGCGATTCACGTTTTGATTATTTGTTCAATGAAAATCCAAATAGCAGAAGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

325

Amino Acids

34.44

Weight (kDa)

6.61

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 11 - 301 5.1e-15 Plant U-box protein ARM repeat region
Arm PF00514 39 - 77 6e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08315
fragaria_vesca FvH4_7g03360 FvH4_7g03360
malus_domestica MD02G1283700.v1.1 MD07G1049200.v1.1
prunus_persica Prupe.2G038900_v2.0.a1
pyrus_communis pycom02g24170
rosa_chinensis RchiOBHm_Chr1g0325681
rosa_laevigata RLG00000030112
rosa_multiflora Rmu_sc0004714.1_g000002
rosa_roxburghii Rroxscaffold_4G00324480
rosa_rugosa Rorug01G0053700
rosa_samantha Rh1AG069500 Rh1BG056700 Rh1CG069800 Rh1DG074400
rosa_wichuraiana Rw1G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 672
AclWI GGATC 7 cut(s) 107, 403, 593, 686, 690, 725, 842
AcuI CTGAAG 1 cut(s) 804
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 4 cut(s) 325, 392, 701, 831
AgsI TTSAA 5 cut(s) 332, 593, 748, 895, 949
AjnI CCWGG 1 cut(s) 41
AloI GAACNNNNNNTCC 2 cut(s) 657, 689
AluBI AGCT 9 cut(s) 51, 86, 91, 149, 668, 770, 848, 898, 975
AluI AGCT 9 cut(s) 51, 86, 91, 149, 668, 770, 848, 898, 975
Alw26I GTCTC 4 cut(s) 43, 61, 161, 910
AlwI GGATC 7 cut(s) 107, 403, 593, 686, 690, 725, 842
ApeKI GCWGC 4 cut(s) 77, 770, 773, 972
AsiSI GCGATCGC 1 cut(s) 495
AspLEI GCGC 6 cut(s) 280, 292, 405, 539, 616, 742
AsuHPI GGTGA 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 64, 757, 785
BceAI ACGGC 2 cut(s) 108, 618
BciT130I CCWGG 1 cut(s) 43
BciVI GTATCC 1 cut(s) 513
BcoDI GTCTC 4 cut(s) 43, 61, 161, 910
BfaI CTAG 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 771
BfuI GTATCC 1 cut(s) 513
BlpI GCTNAGC 2 cut(s) 47, 87
Bme1390I CCNGG 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 823
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 3 cut(s) 460, 586, 617
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 25
Bpu1102I GCTNAGC 2 cut(s) 47, 87
BpuEI CTTGAG 1 cut(s) 461
Bsa29I ATCGAT 1 cut(s) 461
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 324, 825
BsaWI WCCGGW 1 cut(s) 908
BsaXI ACNNNNNCTCC 2 cut(s) 657, 687
Bsc4I CCNNNNNNNGG 4 cut(s) 325, 392, 701, 831
Bse1I ACTGG 1 cut(s) 706
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 1 cut(s) 43
BseCI ATCGAT 1 cut(s) 461
BseDI CCNNGG 2 cut(s) 324, 825
BseGI GGATG 3 cut(s) 451, 632, 654
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 4 cut(s) 325, 392, 701, 831
BseMII CTCAG 4 cut(s) 51, 78, 209, 840
BseNI ACTGG 1 cut(s) 706
BseRI GAGGAG 3 cut(s) 209, 667, 780
BseXI GCAGC 3 cut(s) 64, 757, 785
Bsh1285I CGRYCG 3 cut(s) 461, 495, 518
BshVI ATCGAT 1 cut(s) 461
BsiEI CGRYCG 3 cut(s) 461, 495, 518
BsiSI CCGG 3 cut(s) 144, 545, 909
BslI CCNNNNNNNGG 4 cut(s) 325, 392, 701, 831
BsmAI GTCTC 4 cut(s) 43, 61, 161, 910
BsmBI CGTCTC 1 cut(s) 43
Bsp1720I GCTNAGC 2 cut(s) 47, 87
Bsp19I CCATGG 1 cut(s) 825
Bsp68I TCGCGA 2 cut(s) 243, 491
BspCNI CTCAG 4 cut(s) 52, 79, 208, 841
BspDI ATCGAT 1 cut(s) 461
BspLI GGNNCC 1 cut(s) 823
BspMAI CTGCAG 1 cut(s) 775
BspPI GGATC 7 cut(s) 107, 403, 593, 686, 690, 725, 842
BsrI ACTGG 1 cut(s) 706
BssECI CCNNGG 2 cut(s) 324, 825
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 825
Bst2UI CCWGG 1 cut(s) 43
Bst6I CTCTTC 3 cut(s) 196, 366, 491
BstACI GRCGYC 1 cut(s) 141
BstDEI CTNAG 7 cut(s) 47, 60, 87, 92, 195, 399, 849
BstDSI CCRYGG 2 cut(s) 324, 825
BstF5I GGATG 3 cut(s) 451, 632, 654
BstHHI GCGC 6 cut(s) 280, 292, 405, 539, 616, 742
BstMAI GTCTC 4 cut(s) 43, 61, 161, 910
BstMCI CGRYCG 3 cut(s) 461, 495, 518
BstMWI GCNNNNNNNGC 9 cut(s) 83, 488, 545, 611, 620, 636, 800, 809, 972
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 771
BstV1I GCAGC 3 cut(s) 64, 757, 785
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 4 cut(s) 112, 395, 682, 691
BstYI RGATCY 4 cut(s) 112, 395, 682, 691
Bsu15I ATCGAT 1 cut(s) 461
BsuI GTATCC 1 cut(s) 513
BsuTUI ATCGAT 1 cut(s) 461
BtgI CCRYGG 2 cut(s) 324, 825
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 3 cut(s) 451, 632, 654
BtsIMutI CAGTG 1 cut(s) 699
BtuMI TCGCGA 2 cut(s) 243, 491
CfoI GCGC 6 cut(s) 280, 292, 405, 539, 616, 742
Cfr42I CCGCGG 1 cut(s) 327
ClaI ATCGAT 1 cut(s) 461
CseI GACGC 3 cut(s) 149, 284, 792
Csp6I GTAC 1 cut(s) 157
CviAII CATG 2 cut(s) 25, 826
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 7 cut(s) 47, 60, 87, 92, 195, 399, 849
Eam1104I CTCTTC 3 cut(s) 196, 366, 491
EarI CTCTTC 3 cut(s) 196, 366, 491
EciI GGCGGA 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 825
Eco32I GATATC 2 cut(s) 409, 440
Eco57I CTGAAG 1 cut(s) 804
EcoRII CCWGG 1 cut(s) 41
EcoRV GATATC 2 cut(s) 409, 440
EcoT14I CCWWGG 1 cut(s) 825
ErhI CCWWGG 1 cut(s) 825
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 2 cut(s) 28, 829
FaiI YATR 5 cut(s) 26, 354, 611, 827, 843
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FatI CATG 2 cut(s) 24, 825
FauI CCCGC 2 cut(s) 328, 575
FokI GGATG 3 cut(s) 438, 639, 661
FspBI CTAG 1 cut(s) 677
GlaI GCGC 6 cut(s) 279, 291, 404, 538, 615, 741
GsuI CTGGAG 1 cut(s) 25
HapII CCGG 3 cut(s) 144, 545, 909
HgaI GACGC 3 cut(s) 149, 284, 792
HhaI GCGC 6 cut(s) 280, 292, 405, 539, 616, 742
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 2 cut(s) 28, 829
Hin6I GCGC 6 cut(s) 278, 290, 403, 537, 614, 740
HinP1I GCGC 6 cut(s) 278, 290, 403, 537, 614, 740
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HpaII CCGG 3 cut(s) 144, 545, 909
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 5 cut(s) 61, 395, 507, 784, 864
Hpy188III TCNNGA 8 cut(s) 116, 197, 242, 302, 443, 490, 565, 663
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 5 cut(s) 143, 184, 278, 523, 604
HpyAV CCTTC 3 cut(s) 812, 824, 864
HpyCH4IV ACGT 2 cut(s) 672, 931
HpyCH4V TGCA 2 cut(s) 699, 773
HpyF10VI GCNNNNNNNGC 9 cut(s) 83, 488, 545, 611, 620, 636, 800, 809, 972
HpyF3I CTNAG 7 cut(s) 47, 60, 87, 92, 195, 399, 849
HpySE526I ACGT 2 cut(s) 672, 931
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 2 cut(s) 28, 829
HspAI GCGC 6 cut(s) 278, 290, 403, 537, 614, 740
KspI CCGCGG 1 cut(s) 327
LmnI GCTCC 4 cut(s) 146, 665, 767, 821
Lsp1109I GCAGC 3 cut(s) 64, 757, 785
LweI GCATC 3 cut(s) 460, 586, 617
MaeI CTAG 1 cut(s) 677
MaeII ACGT 2 cut(s) 672, 931
MaeIII GTNAC 1 cut(s) 183
MboII GAAGA 8 cut(s) 183, 249, 383, 406, 478, 605, 644, 886
MflI RGATCY 4 cut(s) 112, 395, 682, 691
MlyI GAGTC 5 cut(s) 90, 163, 208, 383, 464
MspA1I CMGCKG 3 cut(s) 77, 326, 975
MspI CCGG 3 cut(s) 144, 545, 909
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 9 cut(s) 83, 488, 545, 611, 620, 636, 800, 809, 972
NcoI CCATGG 1 cut(s) 825
NlaIII CATG 2 cut(s) 28, 829
NlaIV GGNNCC 1 cut(s) 823
NmeAIII GCCGAG 2 cut(s) 190, 513
NmuCI GTSAC 1 cut(s) 183
NruI TCGCGA 2 cut(s) 243, 491
PcsI WCGNNNNNNNCGW 1 cut(s) 627
PfeI GAWTC 5 cut(s) 446, 541, 572, 748, 926
Ple19I CGATCG 3 cut(s) 461, 495, 518
PleI GAGTC 5 cut(s) 90, 163, 208, 382, 464
PpsI GAGTC 5 cut(s) 90, 163, 208, 382, 464
Psp1406I AACGTT 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 823
PstI CTGCAG 1 cut(s) 775
PsuI RGATCY 4 cut(s) 112, 395, 682, 691
PvuI CGATCG 3 cut(s) 461, 495, 518
PvuII CAGCTG 1 cut(s) 975
RgaI GCGATCGC 1 cut(s) 495
RruI TCGCGA 2 cut(s) 243, 491
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SacII CCGCGG 1 cut(s) 327
SchI GAGTC 5 cut(s) 90, 163, 208, 383, 464
ScrFI CCNGG 1 cut(s) 43
SfaAI GCGATCGC 1 cut(s) 495
SfaNI GCATC 3 cut(s) 460, 586, 617
SfcI CTRYAG 1 cut(s) 771
Sfr303I CCGCGG 1 cut(s) 327
SgfI GCGATCGC 1 cut(s) 495
SgrBI CCGCGG 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SspMI CTAG 1 cut(s) 677
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 825
TaiI ACGT 2 cut(s) 675, 934
TaqI TCGA 5 cut(s) 273, 457, 461, 518, 707
TfiI GAWTC 5 cut(s) 446, 541, 572, 748, 926
TscAI CASTG 1 cut(s) 706
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 4 cut(s) 77, 770, 773, 972
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 3 cut(s) 524, 831, 966
TspGWI ACGGA 3 cut(s) 144, 721, 730
TspRI CASTG 1 cut(s) 706
XspI CTAG 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.