FvH4_7g03360

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014500
Physical Location & Seq
Forward (+)
3696413 .. 3699296
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03360.t1

Sequence Viewer

Length: 1107 bp
ATGTCGTGTGAAATGCTCCAAATTCAACTCTTCTCATCCCAAAATCCACATTACCCATTTCAAAGCACACCAATTCTCCCAAACCCAAAACTCCAAAATACCCACAAATCCAAGCACAATCAGACACACACGATCTCACTAATGGATGTGAAGCTCCGAACGGCTCGTTCTTTAGTCTCCAAGCTCAGCTCCGTCTCCGAACAGACCCGATCCGAAGCCCTGAAAGAGCTCCGACTCATCACCAAGCACGACGCCGACAGCCGCCCCCTCGTCGCCGACGCCGGCGCTATTCCTTACCTGGCCGAGACTCTCTTCGGCTCCTCCCCTGACTTCCAAGACGACGCCGCCGCTACTCTCCTCAACATCTCCATCTCCTGCCGCCACAGCCTCATTTCCACGCGCGGCCTCCTCGACGCGATCTCCCACGCGCTTCGCCACCACAGCTCCCCGACCTCCTCCGCCACCGCCGTCCAGTCCTCCGCCGCTACTCTCCACAGCCTCCTCGTCGTGGAGGACTACCGGCCAATCATCGGCGCCAAGCGCGACATTGTCTACTCGCTGATCGACATCGTCAAAAGCCCTAAGTCGCCTCCGAGGTCGGTCAAGGACGCGCTCAAAGCTCTGTTCGGAATCGCTCTCTGCCCCTCGAATCGGGCCTCGCTGGTGGAGCTCGGGGCGGTTCCCGCGCTTTTTACTCTGGTGGTGAACGACGGCCGCCTCGGGATCGTGGAGGACGCGACGGCGGTGATTGCGCAGGTGGCTGGGTGCGAGGAGAGCGCGGACGCGTTTCGGAGGGTCGCCGGAGTTAGGGTTCTGGCCGACCTTCTGGATTTCTCGACCGGGTCGAGCTTGAGGAGCAGGGAGAATGCAGTGTCGGCGCTGCTCAATTTGACTCGGTGCGGCGGCGAGAGGGCGGTGGTGGAGGTGAGGGAGGAGGGATTGGGGGTGGTGGATGGGATTGCTGACGTGGCGGAGAATGGAGGTCCGAAAGGGAAGAGCAAAGGGGTGGCGCTGTTGAAGGTGATTGATGGCGGGAATAGAAGCATTTCGAGTATATTCAGAGATCCACGGTTTGATTCTTTGCTAAGACAATCTTCCTTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

369

Amino Acids

39.36

Weight (kDa)

8.56

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 57 - 343 2.8e-16 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 58 - 234 1.2e-06 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08315
fragaria_vesca FvH4_7g03360 FvH4_7g03360
malus_domestica MD02G1283700.v1.1 MD07G1049200.v1.1
prunus_persica Prupe.2G038900_v2.0.a1
pyrus_communis pycom02g24170
rosa_chinensis RchiOBHm_Chr1g0325681
rosa_laevigata RLG00000030112
rosa_multiflora Rmu_sc0004714.1_g000002
rosa_roxburghii Rroxscaffold_4G00324480
rosa_rugosa Rorug01G0053700
rosa_samantha Rh1AG069500 Rh1BG056700 Rh1CG069800 Rh1DG074400
rosa_wichuraiana Rw1G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 745
Acc16I TGCGCA 1 cut(s) 753
Acc36I ACCTGC 1 cut(s) 745
AccB1I GGYRCC 1 cut(s) 533
AccI GTMKAC 1 cut(s) 552
AclWI GGATC 3 cut(s) 204, 731, 1058
AcoI YGGCCR 4 cut(s) 300, 521, 712, 816
AcsI RAATTY 1 cut(s) 21
AcyI GRCGYC 4 cut(s) 252, 279, 342, 534
AfiI CCNNNNNNNGG 4 cut(s) 508, 530, 651, 807
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 4 cut(s) 26, 62, 1018, 1102
AjiI CACGTC 1 cut(s) 967
AjnI CCWGG 1 cut(s) 297
AloI GAACNNNNNNTCC 2 cut(s) 795, 827
AluBI AGCT 8 cut(s) 154, 184, 189, 229, 444, 620, 670, 849
AluI AGCT 8 cut(s) 154, 184, 189, 229, 444, 620, 670, 849
Alw21I GWGCWC 2 cut(s) 231, 672
Alw26I GTCTC 3 cut(s) 181, 199, 299
AlwI GGATC 3 cut(s) 204, 731, 1058
Ama87I CYCGRG 2 cut(s) 671, 719
AoxI GGCC 6 cut(s) 300, 403, 521, 654, 712, 816
ApeKI GCWGC 1 cut(s) 880
ApoI RAATTY 1 cut(s) 21
Asp700I GAANNNNTTC 1 cut(s) 1045
AspS9I GGNCC 2 cut(s) 654, 983
AsuC2I CCSGG 1 cut(s) 841
AsuHPI GGTGA 5 cut(s) 232, 715, 757, 937, 1033
AvaI CYCGRG 2 cut(s) 671, 719
AvaII GGWCC 1 cut(s) 983
BanI GGYRCC 1 cut(s) 533
BanII GRGCYC 2 cut(s) 231, 672
Bbv12I GWGCWC 2 cut(s) 231, 672
BbvI GCAGC 1 cut(s) 867
BccI CCATC 3 cut(s) 377, 947, 1022
BceAI ACGGC 4 cut(s) 177, 452, 727, 756
BciT130I CCWGG 1 cut(s) 299
BcnI CCSGG 1 cut(s) 841
BcoDI GTCTC 3 cut(s) 181, 199, 299
BfoI RGCGCY 4 cut(s) 288, 537, 881, 1013
BfuAI ACCTGC 1 cut(s) 745
BlpI GCTNAGC 1 cut(s) 185
Bme1390I CCNGG 2 cut(s) 299, 841
Bme18I GGWCC 1 cut(s) 983
BmeT110I CYCGRG 2 cut(s) 671, 719
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 2 cut(s) 654, 983
BmiI GGNNCC 3 cut(s) 319, 535, 681
BmrFI CCNGG 2 cut(s) 299, 841
Bpu1102I GCTNAGC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 871
BpuMI CCSGG 1 cut(s) 841
BsaBI GATNNNNATC 1 cut(s) 566
BsaHI GRCGYC 4 cut(s) 252, 279, 342, 534
BsaJI CCNNGG 3 cut(s) 593, 718, 1067
BsaXI ACNNNNNCTCC 8 cut(s) 60, 90, 404, 428, 434, 458, 795, 825
Bsc4I CCNNNNNNNGG 4 cut(s) 508, 530, 651, 807
Bse118I RCCGGY 2 cut(s) 281, 519
Bse1I ACTGG 1 cut(s) 472
Bse8I GATNNNNATC 1 cut(s) 566
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 3 cut(s) 593, 718, 1067
BseGI GGATG 3 cut(s) 35, 151, 958
BseJI GATNNNNATC 1 cut(s) 566
BseLI CCNNNNNNNGG 4 cut(s) 508, 530, 651, 807
BseMII CTCAG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 8 cut(s) 310, 347, 398, 445, 491, 785, 868, 947
BseX3I CGGCCG 1 cut(s) 712
BseXI GCAGC 1 cut(s) 867
BseYI CCCAGC 1 cut(s) 761
Bsh1285I CGRYCG 2 cut(s) 715, 840
BshFI GGCC 6 cut(s) 302, 405, 523, 656, 714, 818
BshNI GGYRCC 1 cut(s) 533
BsiEI CGRYCG 2 cut(s) 715, 840
BsiHKAI GWGCWC 2 cut(s) 231, 672
BsiHKCI CYCGRG 2 cut(s) 671, 719
BsiSI CCGG 4 cut(s) 282, 520, 801, 840
BslI CCNNNNNNNGG 4 cut(s) 508, 530, 651, 807
BsmAI GTCTC 3 cut(s) 181, 199, 299
BsmBI CGTCTC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 871
BsnI GGCC 6 cut(s) 302, 405, 523, 656, 714, 818
BsoBI CYCGRG 2 cut(s) 671, 719
Bsp1286I GDGCHC 2 cut(s) 231, 672
Bsp143I GATC 6 cut(s) 132, 209, 417, 561, 723, 1063
Bsp1720I GCTNAGC 1 cut(s) 185
BspANI GGCC 6 cut(s) 302, 405, 523, 656, 714, 818
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 3 cut(s) 319, 535, 681
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 3 cut(s) 204, 731, 1058
BspQI GCTCTTC 1 cut(s) 989
BspT107I GGYRCC 1 cut(s) 533
BsrFI RCCGGY 2 cut(s) 281, 519
BsrI ACTGG 1 cut(s) 472
BssAI RCCGGY 2 cut(s) 281, 519
BssECI CCNNGG 3 cut(s) 593, 718, 1067
BssMI GATC 6 cut(s) 132, 209, 417, 561, 723, 1063
BssNI GRCGYC 4 cut(s) 252, 279, 342, 534
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 1071
Bst6I CTCTTC 3 cut(s) 35, 317, 989
BstACI GRCGYC 4 cut(s) 252, 279, 342, 534
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 3 cut(s) 185, 582, 1085
BstDSI CCRYGG 1 cut(s) 1067
BstF5I GGATG 3 cut(s) 35, 151, 958
BstH2I RGCGCY 4 cut(s) 288, 537, 881, 1013
BstKTI GATC 6 cut(s) 135, 212, 420, 564, 726, 1066
BstMAI GTCTC 3 cut(s) 181, 199, 299
BstMBI GATC 6 cut(s) 132, 209, 417, 561, 723, 1063
BstMCI CGRYCG 2 cut(s) 715, 840
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 297, 839
BstV1I GCAGC 1 cut(s) 867
BstX2I RGATCY 1 cut(s) 1063
BstYI RGATCY 1 cut(s) 1063
BstZI CGGCCG 1 cut(s) 712
BsuRI GGCC 6 cut(s) 302, 405, 523, 656, 714, 818
BtgI CCRYGG 1 cut(s) 1067
BtrI CACGTC 1 cut(s) 967
BtsCI GGATG 3 cut(s) 35, 151, 958
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 1 cut(s) 876
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 1 cut(s) 283
Cfr10I RCCGGY 2 cut(s) 281, 519
Cfr13I GGNCC 2 cut(s) 654, 983
CseI GACGC 7 cut(s) 260, 287, 350, 422, 617, 743, 791
DdeI CTNAG 3 cut(s) 185, 582, 1085
DinI GGCGCC 1 cut(s) 535
DpnI GATC 6 cut(s) 134, 211, 419, 563, 725, 1065
DpnII GATC 6 cut(s) 132, 209, 417, 561, 723, 1063
EaeI YGGCCR 4 cut(s) 300, 521, 712, 816
EagI CGGCCG 1 cut(s) 712
Eam1104I CTCTTC 3 cut(s) 35, 317, 989
EarI CTCTTC 3 cut(s) 35, 317, 989
EciI GGCGGA 3 cut(s) 448, 469, 986
Ecl136II GAGCTC 2 cut(s) 229, 670
EclXI CGGCCG 1 cut(s) 712
Eco24I GRGCYC 2 cut(s) 231, 672
Eco47I GGWCC 1 cut(s) 983
Eco52I CGGCCG 1 cut(s) 712
Eco53kI GAGCTC 2 cut(s) 229, 670
Eco88I CYCGRG 2 cut(s) 671, 719
EcoICRI GAGCTC 2 cut(s) 229, 670
EcoRII CCWGG 1 cut(s) 297
EcoT38I GRGCYC 2 cut(s) 231, 672
EgeI GGCGCC 1 cut(s) 535
EheI GGCGCC 1 cut(s) 535
Esp3I CGTCTC 1 cut(s) 199
FaiI YATR 1 cut(s) 1055
FalI AAGNNNNNCTT 1 cut(s) 1078
FauI CCCGC 2 cut(s) 691, 1025
FblI GTMKAC 1 cut(s) 552
FokI GGATG 3 cut(s) 22, 158, 965
FriOI GRGCYC 2 cut(s) 231, 672
FspI TGCGCA 1 cut(s) 753
GsaI CCCAGC 1 cut(s) 765
HaeII RGCGCY 4 cut(s) 288, 537, 881, 1013
HaeIII GGCC 6 cut(s) 302, 405, 523, 656, 714, 818
HapII CCGG 4 cut(s) 282, 520, 801, 840
HgaI GACGC 7 cut(s) 260, 287, 350, 422, 617, 743, 791
Hin1I GRCGYC 4 cut(s) 252, 279, 342, 534
HinfI GANTC 6 cut(s) 234, 307, 630, 649, 892, 1076
HpaII CCGG 4 cut(s) 282, 520, 801, 840
HphI GGTGA 5 cut(s) 232, 715, 757, 937, 1033
Hpy166II GTNNAC 2 cut(s) 553, 706
Hpy188III TCNNGA 3 cut(s) 721, 827, 835
Hpy8I GTNNAC 2 cut(s) 553, 706
Hpy99I CGWCG 8 cut(s) 254, 275, 281, 344, 416, 509, 713, 742
HpyAV CCTTC 2 cut(s) 833, 1012
HpyCH4III ACNGT 1 cut(s) 1071
HpyCH4IV ACGT 1 cut(s) 966
HpyCH4V TGCA 1 cut(s) 869
HpyF3I CTNAG 3 cut(s) 185, 582, 1085
HpySE526I ACGT 1 cut(s) 966
Hsp92I GRCGYC 4 cut(s) 252, 279, 342, 534
KasI GGCGCC 1 cut(s) 533
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Kzo9I GATC 6 cut(s) 132, 209, 417, 561, 723, 1063
LguI GCTCTTC 1 cut(s) 989
LmnI GCTCC 8 cut(s) 21, 159, 194, 234, 323, 449, 667, 855
Lsp1109I GCAGC 1 cut(s) 867
MaeII ACGT 1 cut(s) 966
MalI GATC 6 cut(s) 134, 211, 419, 563, 725, 1065
MboI GATC 6 cut(s) 132, 209, 417, 561, 723, 1063
MboII GAAGA 4 cut(s) 22, 304, 1006, 1086
MflI RGATCY 1 cut(s) 1063
MhlI GDGCHC 2 cut(s) 231, 672
MluCI AATT 4 cut(s) 21, 72, 886, 1102
MluI ACGCGT 1 cut(s) 783
Mly113I GGCGCC 1 cut(s) 534
MlyI GAGTC 3 cut(s) 228, 301, 886
MmeI TCCRAC 1 cut(s) 256
MreI CGCCGGCG 1 cut(s) 281
MroNI GCCGGC 1 cut(s) 281
MroXI GAANNNNTTC 1 cut(s) 1045
MspI CCGG 4 cut(s) 282, 520, 801, 840
MspR9I CCNGG 2 cut(s) 299, 841
Mva1269I GAATGC 1 cut(s) 871
MvaI CCWGG 1 cut(s) 299
NaeI GCCGGC 1 cut(s) 283
NarI GGCGCC 1 cut(s) 534
NciI CCSGG 1 cut(s) 841
NdeII GATC 6 cut(s) 132, 209, 417, 561, 723, 1063
NgoMIV GCCGGC 1 cut(s) 281
NlaIV GGNNCC 3 cut(s) 319, 535, 681
NmeAIII GCCGAG 1 cut(s) 328
NsbI TGCGCA 1 cut(s) 753
PaqCI CACCTGC 1 cut(s) 745
PciSI GCTCTTC 1 cut(s) 989
PcsI WCGNNNNNNNCGW 1 cut(s) 842
PctI GAATGC 1 cut(s) 871
PdiI GCCGGC 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 1045
PfeI GAWTC 3 cut(s) 630, 649, 1076
PflFI GACNNNGTC 3 cut(s) 548, 569, 841
PleI GAGTC 3 cut(s) 228, 301, 886
PluTI GGCGCC 1 cut(s) 537
PpsI GAGTC 3 cut(s) 228, 301, 886
Psp124BI GAGCTC 2 cut(s) 231, 672
Psp6I CCWGG 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 761
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 3 cut(s) 319, 535, 681
PspPI GGNCC 2 cut(s) 654, 983
PsuI RGATCY 1 cut(s) 1063
PsyI GACNNNGTC 3 cut(s) 548, 569, 841
SacI GAGCTC 2 cut(s) 231, 672
SapI GCTCTTC 1 cut(s) 989
Sau3AI GATC 6 cut(s) 132, 209, 417, 561, 723, 1063
Sau96I GGNCC 2 cut(s) 654, 983
SchI GAGTC 3 cut(s) 228, 301, 886
ScrFI CCNGG 2 cut(s) 299, 841
SduI GDGCHC 2 cut(s) 231, 672
SfoI GGCGCC 1 cut(s) 535
SgrAI CRCCGGYG 1 cut(s) 281
SinI GGWCC 1 cut(s) 983
SmlI CTYRAG 1 cut(s) 850
SmoI CTYRAG 1 cut(s) 850
Sse9I AATT 4 cut(s) 21, 72, 886, 1102
SspDI GGCGCC 1 cut(s) 533
SstI GAGCTC 2 cut(s) 231, 672
StyD4I CCNGG 2 cut(s) 297, 839
TaaI ACNGT 1 cut(s) 1071
TaiI ACGT 1 cut(s) 969
TaqI TCGA 6 cut(s) 411, 564, 647, 836, 845, 1049
TaqII GACCGA 1 cut(s) 589
TasI AATT 4 cut(s) 21, 72, 886, 1102
TauI GCSGC 9 cut(s) 264, 347, 350, 381, 405, 485, 717, 903, 906
TfiI GAWTC 3 cut(s) 630, 649, 1076
TscAI CASTG 1 cut(s) 876
TseI GCWGC 1 cut(s) 880
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 876
Tth111I GACNNNGTC 3 cut(s) 548, 569, 841
VpaK11BI GGWCC 1 cut(s) 983
XapI RAATTY 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 552
XmnI GAANNNNTTC 1 cut(s) 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.