MD07G1049200.v1.1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014500
Physical Location & Seq
Reverse (-)
4216205 .. 4217164
960 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1049200.v1.1.491

Sequence Viewer

Length: 960 bp
ATGGAAGTGAAGGTCCGTACGGTTCGGTCCTTGGTCTCCAAGCTCAGCTCCGTCTCCTCCCAAACCCGAGCCGACGCCCTCAAAGAGCTTCGCCTCATCACCAAGCTCGACCCAGACAGCCGCCCCCTCGTCGCCGAATCCGGCGCCATACCTTACTTGTCCGAAACCCTCTTCGACTCCTCCCCTTCCCTCCAAGACGACGCCGCCGCCGCCCTCCTAAACGTCTCTATCTCCTGCCGCCACTCCCTCATCTCCACCCGCGGCCTCCTCGACGCTCTCTCCCACGTTCTCCGCCACCACGCCTCCCCTTCCTCCTCCCCCTTCGCCGTCCAGTCCTCCGCCGCCACCCTCCACAGCCTCCTCGTCGTCGACGACTACCGCCCCATGATCGGCTCCAAGCGCGACATCGTCTACTCTCTGATCGACATCGTCAAGAGCCCCAATTCTCCCGCGCGGTCGGTGAAGGACGCGCTGAAGGCGCTGTTCGGGATCGCTCTCTACGCGCTCAACCGCGGCGCGCTGGTGGAGCTGGGGGCCGTTCCTGCGCTTTTTACTTTGGTGGTGAAGGACGGGCGCGTGGGGATCGTGGAGGACGCCACGGCGGTGATCGCGCAGGTGGCCGGGTGCGAGGAGAGCGAGGAAGCGTTTCAGAGGGTTTCCGGGGTCAGGGTTTTGGCGGATTTGCTGGATCTCTCGACCGGGTCCAGCTTGAGGAGCAAGGAGAACGCGGTGGGTGCGCTGCTTAATCTGTCCAGGTGCGGCGGAGAGAGGGCGCTGAGGGAGGTGAGGGAGGAGGGGCTGGGAGTGGTGGATGGGATTGCTGATGTGGCGGAGAGTGGCAGCGCAAAAGCGAAGAGCAAGGCAGTTGCGCTGCTGAAGGTGGTTGATGGCGGGAGCGGATGCATTGCCAGCGTTTTCAGAGATCCGCGGTTTCATTCTCTACTAAACCAAACTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

320

Amino Acids

33.61

Weight (kDa)

7.02

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 7 - 187 9e-07 ARMC5
ARM_PUB PF25598 8 - 296 1.1e-18 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08315
fragaria_vesca FvH4_7g03360 FvH4_7g03360
malus_domestica MD02G1283700.v1.1 MD07G1049200.v1.1
prunus_persica Prupe.2G038900_v2.0.a1
pyrus_communis pycom02g24170
rosa_chinensis RchiOBHm_Chr1g0325681
rosa_laevigata RLG00000030112
rosa_multiflora Rmu_sc0004714.1_g000002
rosa_roxburghii Rroxscaffold_4G00324480
rosa_rugosa Rorug01G0053700
rosa_samantha Rh1AG069500 Rh1BG056700 Rh1CG069800 Rh1DG074400
rosa_wichuraiana Rw1G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 604
Acc36I ACCTGC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 143
AccBSI CCGCTC 1 cut(s) 897
AccI GTMKAC 2 cut(s) 369, 411
AclWI GGATC 4 cut(s) 497, 590, 696, 917
AcoI YGGCCR 1 cut(s) 618
AcuI CTGAAG 2 cut(s) 494, 896
AcyI GRCGYC 4 cut(s) 75, 144, 201, 594
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 3 cut(s) 389, 666, 711
AjnI CCWGG 1 cut(s) 752
AleI CACNNNNGTG 1 cut(s) 602
AluBI AGCT 6 cut(s) 43, 48, 88, 106, 529, 708
AluI AGCT 6 cut(s) 43, 48, 88, 106, 529, 708
Alw26I GTCTC 3 cut(s) 40, 58, 229
AlwI GGATC 4 cut(s) 497, 590, 696, 917
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 3 cut(s) 262, 534, 618
ApeKI GCWGC 3 cut(s) 739, 840, 871
Asp700I GAANNNNTTC 1 cut(s) 645
AspS9I GGNCC 4 cut(s) 13, 27, 534, 702
AsuC2I CCSGG 3 cut(s) 622, 661, 700
AsuHPI GGTGA 5 cut(s) 91, 472, 574, 616, 796
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 3 cut(s) 13, 27, 702
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 440
BbvCI CCTCAGC 1 cut(s) 776
BbvI GCAGC 3 cut(s) 726, 852, 858
BccI CCATC 2 cut(s) 806, 881
BceAI ACGGC 3 cut(s) 311, 521, 615
BciT130I CCWGG 1 cut(s) 754
BcnI CCSGG 3 cut(s) 622, 661, 700
BcoDI GTCTC 3 cut(s) 40, 58, 229
BfoI RGCGCY 3 cut(s) 147, 482, 776
BfuAI ACCTGC 1 cut(s) 604
BlpI GCTNAGC 1 cut(s) 44
Bme1390I CCNGG 4 cut(s) 622, 661, 700, 754
Bme18I GGWCC 3 cut(s) 13, 27, 702
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 4 cut(s) 13, 27, 534, 702
BmiI GGNNCC 4 cut(s) 145, 394, 535, 703
BmrFI CCNGG 4 cut(s) 622, 661, 700, 754
BmsI GCATC 1 cut(s) 890
Bpu10I CCTNAGC 1 cut(s) 776
Bpu1102I GCTNAGC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 730
BpuMI CCSGG 3 cut(s) 622, 661, 700
BsaBI GATNNNNATC 1 cut(s) 425
BsaHI GRCGYC 4 cut(s) 75, 144, 201, 594
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 6 cut(s) 30, 259, 511, 597, 660, 926
BsaXI ACNNNNNCTCC 4 cut(s) 263, 287, 293, 317
Bsc4I CCNNNNNNNGG 3 cut(s) 389, 666, 711
Bse1I ACTGG 1 cut(s) 331
Bse3DI GCAATG 1 cut(s) 903
Bse8I GATNNNNATC 1 cut(s) 425
BseBI CCWGG 1 cut(s) 754
BseDI CCNNGG 6 cut(s) 30, 259, 511, 597, 660, 926
BseGI GGATG 2 cut(s) 817, 905
BseJI GATNNNNATC 1 cut(s) 425
BseLI CCNNNNNNNGG 3 cut(s) 389, 666, 711
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 2 cut(s) 58, 767
BseNI ACTGG 1 cut(s) 331
BsePI GCGCGC 1 cut(s) 516
BseRI GAGGAG 8 cut(s) 46, 169, 257, 304, 350, 644, 727, 806
BseXI GCAGC 3 cut(s) 726, 852, 858
BseYI CCCAGC 2 cut(s) 529, 799
Bsh1285I CGRYCG 2 cut(s) 458, 699
BshFI GGCC 3 cut(s) 264, 536, 620
BshNI GGYRCC 1 cut(s) 143
BsiEI CGRYCG 2 cut(s) 458, 699
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 4 cut(s) 141, 621, 660, 699
BsiWI CGTACG 1 cut(s) 17
BslI CCNNNNNNNGG 3 cut(s) 389, 666, 711
BsmAI GTCTC 3 cut(s) 40, 58, 229
BsmBI CGTCTC 2 cut(s) 58, 229
BsnI GGCC 3 cut(s) 264, 536, 620
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 440
Bsp143I GATC 7 cut(s) 387, 420, 489, 582, 606, 688, 922
Bsp1720I GCTNAGC 1 cut(s) 44
BspANI GGCC 3 cut(s) 264, 536, 620
BspCNI CTCAG 2 cut(s) 57, 768
BspLI GGNNCC 4 cut(s) 145, 394, 535, 703
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 4 cut(s) 497, 590, 696, 917
BspQI GCTCTTC 1 cut(s) 848
BspT107I GGYRCC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 897
BsrDI GCAATG 1 cut(s) 903
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 6 cut(s) 30, 259, 511, 597, 660, 926
BssHII GCGCGC 1 cut(s) 516
BssMI GATC 7 cut(s) 387, 420, 489, 582, 606, 688, 922
BssNI GRCGYC 4 cut(s) 75, 144, 201, 594
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 754
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 2 cut(s) 176, 848
BstACI GRCGYC 4 cut(s) 75, 144, 201, 594
BstC8I GCNNGC 2 cut(s) 518, 910
BstDEI CTNAG 2 cut(s) 44, 776
BstDSI CCRYGG 4 cut(s) 259, 511, 597, 926
BstF5I GGATG 2 cut(s) 817, 905
BstH2I RGCGCY 3 cut(s) 147, 482, 776
BstKTI GATC 7 cut(s) 390, 423, 492, 585, 609, 691, 925
BstMAI GTCTC 3 cut(s) 40, 58, 229
BstMBI GATC 7 cut(s) 387, 420, 489, 582, 606, 688, 922
BstMCI CGRYCG 2 cut(s) 458, 699
BstNI CCWGG 1 cut(s) 754
BstSCI CCNGG 4 cut(s) 620, 659, 698, 752
BstV1I GCAGC 3 cut(s) 726, 852, 858
BstX2I RGATCY 2 cut(s) 688, 922
BstYI RGATCY 2 cut(s) 688, 922
BsuRI GGCC 3 cut(s) 264, 536, 620
BtgI CCRYGG 4 cut(s) 259, 511, 597, 926
BtsCI GGATG 2 cut(s) 817, 905
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 2 cut(s) 518, 910
Cfr13I GGNCC 4 cut(s) 13, 27, 534, 702
Cfr42I CCGCGG 3 cut(s) 262, 514, 929
CseI GACGC 5 cut(s) 83, 209, 281, 476, 602
Csp6I GTAC 1 cut(s) 18
CviAII CATG 1 cut(s) 385
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 2 cut(s) 44, 776
DinI GGCGCC 1 cut(s) 145
DpnI GATC 7 cut(s) 389, 422, 491, 584, 608, 690, 924
DpnII GATC 7 cut(s) 387, 420, 489, 582, 606, 688, 922
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 176, 848
EarI CTCTTC 2 cut(s) 176, 848
EciI GGCGGA 5 cut(s) 281, 328, 692, 777, 845
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 440
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 3 cut(s) 13, 27, 702
Eco57I CTGAAG 2 cut(s) 494, 896
Eco88I CYCGRG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 752
EcoT14I CCWWGG 1 cut(s) 30
EcoT22I ATGCAT 1 cut(s) 905
EcoT38I GRGCYC 1 cut(s) 440
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 30
Esp3I CGTCTC 2 cut(s) 58, 229
FaeI CATG 1 cut(s) 388
FaiI YATR 2 cut(s) 149, 386
FatI CATG 1 cut(s) 384
FauI CCCGC 3 cut(s) 266, 457, 884
FblI GTMKAC 2 cut(s) 369, 411
FokI GGATG 2 cut(s) 824, 912
FriOI GRGCYC 1 cut(s) 440
GsaI CCCAGC 2 cut(s) 533, 803
HaeII RGCGCY 3 cut(s) 147, 482, 776
HaeIII GGCC 3 cut(s) 264, 536, 620
HapII CCGG 4 cut(s) 141, 621, 660, 699
HgaI GACGC 5 cut(s) 83, 209, 281, 476, 602
Hin1I GRCGYC 4 cut(s) 75, 144, 201, 594
Hin1II CATG 1 cut(s) 388
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 2 cut(s) 137, 176
HpaII CCGG 4 cut(s) 141, 621, 660, 699
HphI GGTGA 5 cut(s) 91, 472, 574, 616, 796
Hpy166II GTNNAC 2 cut(s) 370, 412
Hpy188I TCNGA 4 cut(s) 163, 420, 651, 920
Hpy188III TCNNGA 3 cut(s) 433, 487, 694
Hpy8I GTNNAC 2 cut(s) 370, 412
Hpy99I CGWCG 7 cut(s) 77, 134, 203, 275, 368, 371, 374
HpyAV CCTTC 8 cut(s) 4, 195, 318, 331, 457, 469, 559, 871
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 2 cut(s) 222, 285
HpyCH4V TGCA 1 cut(s) 903
HpyF3I CTNAG 2 cut(s) 44, 776
HpySE526I ACGT 2 cut(s) 222, 285
Hsp92I GRCGYC 4 cut(s) 75, 144, 201, 594
Hsp92II CATG 1 cut(s) 388
KasI GGCGCC 1 cut(s) 143
KspI CCGCGG 3 cut(s) 262, 514, 929
Kzo9I GATC 7 cut(s) 387, 420, 489, 582, 606, 688, 922
LguI GCTCTTC 1 cut(s) 848
LmnI GCTCC 5 cut(s) 53, 398, 526, 714, 894
Lsp1109I GCAGC 3 cut(s) 726, 852, 858
LweI GCATC 1 cut(s) 890
MaeII ACGT 2 cut(s) 222, 285
MalI GATC 7 cut(s) 389, 422, 491, 584, 608, 690, 924
MbiI CCGCTC 1 cut(s) 897
MboI GATC 7 cut(s) 387, 420, 489, 582, 606, 688, 922
MboII GAAGA 2 cut(s) 163, 865
MflI RGATCY 2 cut(s) 688, 922
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 1 cut(s) 442
Mly113I GGCGCC 1 cut(s) 144
MlyI GAGTC 1 cut(s) 170
Mph1103I ATGCAT 1 cut(s) 905
MroXI GAANNNNTTC 1 cut(s) 645
MseI TTAA 1 cut(s) 744
MslI CAYNNNNRTG 1 cut(s) 602
MspA1I CMGCKG 3 cut(s) 261, 513, 928
MspI CCGG 4 cut(s) 141, 621, 660, 699
MspR9I CCNGG 4 cut(s) 622, 661, 700, 754
MvaI CCWGG 1 cut(s) 754
NarI GGCGCC 1 cut(s) 144
NciI CCSGG 3 cut(s) 622, 661, 700
NdeII GATC 7 cut(s) 387, 420, 489, 582, 606, 688, 922
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 4 cut(s) 145, 394, 535, 703
NsiI ATGCAT 1 cut(s) 905
OliI CACNNNNGTG 1 cut(s) 602
PaqCI CACCTGC 1 cut(s) 604
PauI GCGCGC 1 cut(s) 516
PciSI GCTCTTC 1 cut(s) 848
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 645
PfeI GAWTC 1 cut(s) 137
Pfl23II CGTACG 1 cut(s) 17
PflFI GACNNNGTC 3 cut(s) 407, 428, 700
PleI GAGTC 1 cut(s) 170
PluTI GGCGCC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 752
PspFI CCCAGC 2 cut(s) 529, 799
PspGI CCWGG 1 cut(s) 752
PspLI CGTACG 1 cut(s) 17
PspN4I GGNNCC 4 cut(s) 145, 394, 535, 703
PspPI GGNCC 4 cut(s) 13, 27, 534, 702
PsuI RGATCY 2 cut(s) 688, 922
PsyI GACNNNGTC 3 cut(s) 407, 428, 700
PteI GCGCGC 1 cut(s) 516
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 602
SacII CCGCGG 3 cut(s) 262, 514, 929
SalI GTCGAC 1 cut(s) 368
SapI GCTCTTC 1 cut(s) 848
SaqAI TTAA 1 cut(s) 744
Sau3AI GATC 7 cut(s) 387, 420, 489, 582, 606, 688, 922
Sau96I GGNCC 4 cut(s) 13, 27, 534, 702
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 4 cut(s) 622, 661, 700, 754
SduI GDGCHC 1 cut(s) 440
SfaNI GCATC 1 cut(s) 890
SfoI GGCGCC 1 cut(s) 145
Sfr303I CCGCGG 3 cut(s) 262, 514, 929
SgrBI CCGCGG 3 cut(s) 262, 514, 929
SgrDI CGTCGACG 1 cut(s) 368
SinI GGWCC 3 cut(s) 13, 27, 702
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 709
SmoI CTYRAG 1 cut(s) 709
Sse9I AATT 1 cut(s) 442
SspDI GGCGCC 1 cut(s) 143
StyD4I CCNGG 4 cut(s) 620, 659, 698, 752
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 2 cut(s) 225, 288
TaqI TCGA 6 cut(s) 108, 174, 270, 369, 423, 695
TaqII GACCGA 1 cut(s) 15
TasI AATT 1 cut(s) 442
TauI GCSGC 9 cut(s) 123, 206, 209, 212, 240, 264, 344, 516, 762
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TseI GCWGC 3 cut(s) 739, 840, 871
TspDTI ATGAA 1 cut(s) 923
TspGWI ACGGA 2 cut(s) 5, 40
Tth111I GACNNNGTC 3 cut(s) 407, 428, 700
VpaK11BI GGWCC 3 cut(s) 13, 27, 702
XmiI GTMKAC 2 cut(s) 369, 411
XmnI GAANNNNTTC 1 cut(s) 645
Zsp2I ATGCAT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.