U-box domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08315 |
| fragaria_vesca | FvH4_7g03360 FvH4_7g03360 |
| malus_domestica | MD02G1283700.v1.1 MD07G1049200.v1.1 |
| prunus_persica | Prupe.2G038900_v2.0.a1 |
| pyrus_communis | pycom02g24170 |
| rosa_chinensis | RchiOBHm_Chr1g0325681 |
| rosa_laevigata | RLG00000030112 |
| rosa_multiflora | Rmu_sc0004714.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00324480 |
| rosa_rugosa | Rorug01G0053700 |
| rosa_samantha | Rh1AG069500 Rh1BG056700 Rh1CG069800 Rh1DG074400 |
| rosa_wichuraiana | Rw1G005740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 168 |
| AccII | CGCG | 1 cut(s) | 233 |
| AciI | CCGC | 2 cut(s) | 233, 389 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 345 |
| AgsI | TTSAA | 2 cut(s) | 119, 311 |
| AluBI | AGCT | 2 cut(s) | 105, 294 |
| AluI | AGCT | 2 cut(s) | 105, 294 |
| Alw21I | GWGCWC | 1 cut(s) | 345 |
| Alw26I | GTCTC | 2 cut(s) | 17, 264 |
| Alw44I | GTGCAC | 1 cut(s) | 341 |
| AoxI | GGCC | 1 cut(s) | 222 |
| ApaLI | GTGCAC | 1 cut(s) | 341 |
| ApeKI | GCWGC | 3 cut(s) | 50, 333, 397 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 179 |
| AsuHPI | GGTGA | 6 cut(s) | 64, 152, 259, 295, 386, 431 |
| BaeGI | GKGCMC | 1 cut(s) | 345 |
| Bbv12I | GWGCWC | 1 cut(s) | 345 |
| BbvI | GCAGC | 3 cut(s) | 37, 320, 384 |
| BccI | CCATC | 1 cut(s) | 182 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 416, 450 |
| BcoDI | GTCTC | 2 cut(s) | 17, 264 |
| BisI | GCNGC | 3 cut(s) | 51, 334, 398 |
| BlsI | GCNGC | 3 cut(s) | 52, 335, 399 |
| BmrI | ACTGGG | 1 cut(s) | 154 |
| BmsI | GCATC | 2 cut(s) | 376, 424 |
| BmuI | ACTGGG | 1 cut(s) | 154 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 320, 352 |
| BpmI | CTGGAG | 1 cut(s) | 386 |
| Bsa29I | ATCGAT | 1 cut(s) | 432 |
| BsaI | GGTCTC | 1 cut(s) | 264 |
| BsaJI | CCNNGG | 1 cut(s) | 207 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 345 |
| Bse1I | ACTGG | 4 cut(s) | 16, 149, 176, 350 |
| BseCI | ATCGAT | 1 cut(s) | 432 |
| BseDI | CCNNGG | 1 cut(s) | 207 |
| BseGI | GGATG | 1 cut(s) | 34 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 345 |
| BseNI | ACTGG | 4 cut(s) | 16, 149, 176, 350 |
| BseSI | GKGCMC | 1 cut(s) | 345 |
| BseXI | GCAGC | 3 cut(s) | 37, 320, 384 |
| BsgI | GTGCAG | 1 cut(s) | 36 |
| Bsh1236I | CGCG | 1 cut(s) | 233 |
| BshFI | GGCC | 1 cut(s) | 224 |
| BshVI | ATCGAT | 1 cut(s) | 432 |
| BsiHKAI | GWGCWC | 1 cut(s) | 345 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 345 |
| BsmAI | GTCTC | 2 cut(s) | 17, 264 |
| BsmBI | CGTCTC | 1 cut(s) | 17 |
| BsnI | GGCC | 1 cut(s) | 224 |
| Bso31I | GGTCTC | 1 cut(s) | 264 |
| Bsp1286I | GDGCHC | 1 cut(s) | 345 |
| BspACI | CCGC | 2 cut(s) | 233, 389 |
| BspANI | GGCC | 1 cut(s) | 224 |
| BspDI | ATCGAT | 1 cut(s) | 432 |
| BspFNI | CGCG | 1 cut(s) | 233 |
| BspTNI | GGTCTC | 1 cut(s) | 264 |
| BsrI | ACTGG | 4 cut(s) | 16, 149, 176, 350 |
| BssECI | CCNNGG | 1 cut(s) | 207 |
| BssT1I | CCWWGG | 1 cut(s) | 207 |
| Bst4CI | ACNGT | 3 cut(s) | 57, 154, 374 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 203, 397 |
| BstF5I | GGATG | 1 cut(s) | 34 |
| BstFNI | CGCG | 1 cut(s) | 233 |
| BstMAI | GTCTC | 2 cut(s) | 17, 264 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 50, 203, 230, 333, 397 |
| BstSLI | GKGCMC | 1 cut(s) | 345 |
| BstUI | CGCG | 1 cut(s) | 233 |
| BstV1I | GCAGC | 3 cut(s) | 37, 320, 384 |
| Bsu15I | ATCGAT | 1 cut(s) | 432 |
| BsuRI | GGCC | 1 cut(s) | 224 |
| BsuTUI | ATCGAT | 1 cut(s) | 432 |
| BtsCI | GGATG | 1 cut(s) | 34 |
| BtsIMutI | CAGTG | 1 cut(s) | 343 |
| ClaI | ATCGAT | 1 cut(s) | 432 |
| CseI | GACGC | 1 cut(s) | 239 |
| CviAII | CATG | 2 cut(s) | 134, 185 |
| CviJI | RGCY | 7 cut(s) | 5, 44, 105, 224, 294, 314, 333 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 44, 105, 224, 294, 314, 333 |
| Eco130I | CCWWGG | 1 cut(s) | 207 |
| Eco31I | GGTCTC | 1 cut(s) | 264 |
| EcoT14I | CCWWGG | 1 cut(s) | 207 |
| ErhI | CCWWGG | 1 cut(s) | 207 |
| Esp3I | CGTCTC | 1 cut(s) | 17 |
| FaeI | CATG | 2 cut(s) | 137, 188 |
| FaiI | YATR | 7 cut(s) | 135, 186, 227, 278, 360, 393, 457 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 281, 313 |
| FatI | CATG | 2 cut(s) | 133, 184 |
| FauI | CCCGC | 1 cut(s) | 396 |
| FblI | GTMKAC | 1 cut(s) | 168 |
| Fnu4HI | GCNGC | 3 cut(s) | 51, 334, 398 |
| FokI | GGATG | 1 cut(s) | 41 |
| Fsp4HI | GCNGC | 3 cut(s) | 51, 334, 398 |
| GluI | GCNGC | 3 cut(s) | 51, 334, 398 |
| GsuI | CTGGAG | 1 cut(s) | 386 |
| HaeIII | GGCC | 1 cut(s) | 224 |
| HgaI | GACGC | 1 cut(s) | 239 |
| Hin1II | CATG | 2 cut(s) | 137, 188 |
| HincII | GTYRAC | 1 cut(s) | 127 |
| HindII | GTYRAC | 1 cut(s) | 127 |
| HinfI | GANTC | 1 cut(s) | 349 |
| HphI | GGTGA | 6 cut(s) | 64, 152, 259, 295, 386, 431 |
| Hpy166II | GTNNAC | 5 cut(s) | 72, 127, 169, 303, 343 |
| Hpy188I | TCNGA | 2 cut(s) | 257, 321 |
| Hpy188III | TCNNGA | 2 cut(s) | 353, 403 |
| Hpy8I | GTNNAC | 5 cut(s) | 72, 127, 169, 303, 343 |
| HpyAV | CCTTC | 1 cut(s) | 131 |
| HpyCH4III | ACNGT | 3 cut(s) | 57, 154, 374 |
| HpyCH4V | TGCA | 3 cut(s) | 53, 343, 410 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 50, 203, 230, 333, 397 |
| Hsp92II | CATG | 2 cut(s) | 137, 188 |
| LmnI | GCTCC | 4 cut(s) | 110, 280, 341, 405 |
| LpnPI | CCDG | 5 cut(s) | 130, 157, 331, 338, 416 |
| Lsp1109I | GCAGC | 3 cut(s) | 37, 320, 384 |
| LweI | GCATC | 2 cut(s) | 376, 424 |
| MaeIII | GTNAC | 2 cut(s) | 140, 247 |
| MhlI | GDGCHC | 1 cut(s) | 345 |
| MluCI | AATT | 3 cut(s) | 175, 216, 261 |
| MlyI | GAGTC | 1 cut(s) | 343 |
| MmeI | TCCRAC | 1 cut(s) | 132 |
| MnlI | CCTC | 5 cut(s) | 214, 259, 322, 325, 409 |
| MroXI | GAANNNNTTC | 1 cut(s) | 179 |
| MslI | CAYNNNNRTG | 2 cut(s) | 138, 372 |
| MvnI | CGCG | 1 cut(s) | 233 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 50, 203, 230, 333, 397 |
| NlaIII | CATG | 2 cut(s) | 137, 188 |
| NmuCI | GTSAC | 2 cut(s) | 140, 247 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 162 |
| PdmI | GAANNNNTTC | 1 cut(s) | 179 |
| PkrI | GCNGC | 3 cut(s) | 52, 335, 399 |
| PleI | GAGTC | 1 cut(s) | 343 |
| PpsI | GAGTC | 1 cut(s) | 343 |
| RseI | CAYNNNNRTG | 2 cut(s) | 138, 372 |
| SatI | GCNGC | 3 cut(s) | 51, 334, 398 |
| SchI | GAGTC | 1 cut(s) | 343 |
| SduI | GDGCHC | 1 cut(s) | 345 |
| SetI | ASST | 6 cut(s) | 107, 142, 276, 296, 420, 444 |
| SfaNI | GCATC | 2 cut(s) | 376, 424 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 138, 372 |
| Sse9I | AATT | 3 cut(s) | 175, 216, 261 |
| SsiI | CCGC | 2 cut(s) | 233, 389 |
| StyI | CCWWGG | 1 cut(s) | 207 |
| TaaI | ACNGT | 3 cut(s) | 57, 154, 374 |
| TaqI | TCGA | 2 cut(s) | 414, 432 |
| TasI | AATT | 3 cut(s) | 175, 216, 261 |
| TscAI | CASTG | 1 cut(s) | 350 |
| TseFI | GTSAC | 2 cut(s) | 140, 247 |
| TseI | GCWGC | 3 cut(s) | 50, 333, 397 |
| Tsp45I | GTSAC | 2 cut(s) | 140, 247 |
| TspDTI | ATGAA | 1 cut(s) | 150 |
| TspGWI | ACGGA | 2 cut(s) | 41, 328 |
| TspRI | CASTG | 1 cut(s) | 350 |
| VneI | GTGCAC | 1 cut(s) | 341 |
| XmiI | GTMKAC | 1 cut(s) | 168 |
| XmnI | GAANNNNTTC | 1 cut(s) | 179 |