Prupe.2G038900_v2.0.a1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014500
Physical Location & Seq
Forward (+)
4179012 .. 4180918
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G038900.1

Sequence Viewer

Length: 960 bp
ATGGAAGTGAAGCTCCGAACGTCTCGCTCCTTGGTCTCCAAGCTCAGCTCAGTCTCATCCCAAACCCGCTCCGATGCCTTGAAAGAGCTTCGGCTCATCACCAAGCTCGACCCCGACAGCCGCCCCCTCGTAGCCGAAGCCGGAGCCATCCCTTACCTCTCCGAAACCCTCTTCGACTCTTCCCCTTCCCTCCAAGACGACGCTGCTGCGACCCTCCTAAACCTCTCCATCTCCTGCCGCCACTCCCTCATCTCCACGCGCGGCCTCCTTGACGCGCTTTCCCACGTCCTCCGCCACCACGCATCCCCCTCCTCCTCCGCCTTCGCCGTCCAGTCCTCCGCCGCCACCCTCCACAGCCTCCTCGTCGTTGACGACTACCGCCCCATCATCGGCGCCAAGCGCGACATCGCCTACTCCCTCATCGACATCGTCAAGAGCCTCAACTCGCCTCCGCGGTCGGTAAAGGACGCGCTGAAGGCGCTCTTCGGGATCTCCCTCTACGCGCTCAACCGCGGCGCGTTGGTGGAGCTCGGGGCGGTTCCCGCGCTTTTCACGCTGGTGGTGAAGGACGGGCGCGTGGGGATCGTGGAGGACTCGACGGCCGTGATCGCGCAGGTGGCGGGGTGCGAGGAGAGCGAGGATGAGTTCCGGAGGGTTTCAGGGGTTAGGGTTCTAGCGGACCTGCTGGATCCGTCGACGGGGACGAGCCTGAGGAGCAGGGAGAACGCGGTATCGGCGCTGCTGAATCTGGCGAGGTGCTGCAGCGAGAGGGCAGTGAGGGAGGTGAGAGAGGAGGGGATGGGGGTGGTCGATGGGGTTGCTGACGTGGCGGAGAATGGTGGGGCCAAGGGGAAGAGCAAGGCGGTGGCGCTGCTGAAGGTGATTGATGGCGGGAGTGGAAGCATTGCTAGCGTTTTCAGAGATAAACGGTTTGATTGTTTGCTAAATCAATCGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

320

Amino Acids

33.81

Weight (kDa)

6.97

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08315
fragaria_vesca FvH4_7g03360 FvH4_7g03360
malus_domestica MD02G1283700.v1.1 MD07G1049200.v1.1
prunus_persica Prupe.2G038900_v2.0.a1
pyrus_communis pycom02g24170
rosa_chinensis RchiOBHm_Chr1g0325681
rosa_laevigata RLG00000030112
rosa_multiflora Rmu_sc0004714.1_g000002
rosa_roxburghii Rroxscaffold_4G00324480
rosa_rugosa Rorug01G0053700
rosa_samantha Rh1AG069500 Rh1BG056700 Rh1CG069800 Rh1DG074400
rosa_wichuraiana Rw1G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 604
Acc36I ACCTGC 2 cut(s) 604, 690
AccB1I GGYRCC 1 cut(s) 392
AccBSI CCGCTC 1 cut(s) 69
AccI GTMKAC 1 cut(s) 695
AccIII TCCGGA 1 cut(s) 648
AclWI GGATC 4 cut(s) 497, 590, 683, 696
AcoI YGGCCR 1 cut(s) 600
AcuI CTGAAG 2 cut(s) 494, 896
AcyI GRCGYC 1 cut(s) 393
AfiI CCNNNNNNNGG 2 cut(s) 389, 698
AgsI TTSAA 1 cut(s) 82
AjiI CACGTC 2 cut(s) 286, 826
AleI CACNNNNGTG 1 cut(s) 557
AluBI AGCT 6 cut(s) 13, 43, 48, 88, 106, 529
AluI AGCT 6 cut(s) 13, 43, 48, 88, 106, 529
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 3 cut(s) 27, 40, 58
AlwI GGATC 4 cut(s) 497, 590, 683, 696
Ama87I CYCGRG 1 cut(s) 530
Aor13HI TCCGGA 1 cut(s) 648
AoxI GGCC 3 cut(s) 262, 600, 843
ApeKI GCWGC 6 cut(s) 203, 206, 739, 759, 762, 871
AspS9I GGNCC 2 cut(s) 679, 843
AsuHPI GGTGA 4 cut(s) 91, 574, 796, 892
AsuNHI GCTAGC 1 cut(s) 908
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 1 cut(s) 679
AxyI CCTNAGG 1 cut(s) 710
BamHI GGATCC 1 cut(s) 688
BanI GGYRCC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 6 cut(s) 190, 193, 726, 746, 774, 858
BccI CCATC 6 cut(s) 155, 236, 392, 793, 806, 881
BceAI ACGGC 3 cut(s) 311, 587, 615
BcgI CGANNNNNNTGC 4 cut(s) 188, 222, 800, 834
BcoDI GTCTC 3 cut(s) 27, 40, 58
BfaI CTAG 2 cut(s) 674, 909
BfmI CTRYAG 1 cut(s) 760
BfoI RGCGCY 4 cut(s) 396, 482, 740, 872
BfuAI ACCTGC 2 cut(s) 604, 690
BlpI GCTNAGC 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 679
BmeT110I CYCGRG 1 cut(s) 530
BmgBI CACGTC 2 cut(s) 286, 826
BmgT120I GGNCC 2 cut(s) 679, 843
BmiI GGNNCC 5 cut(s) 145, 394, 540, 690, 844
BmsI GCATC 2 cut(s) 64, 311
BmtI GCTAGC 1 cut(s) 912
Bpu1102I GCTNAGC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 4 cut(s) 30, 452, 511, 846
BsaWI WCCGGW 1 cut(s) 648
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 698
Bse1I ACTGG 1 cut(s) 331
Bse21I CCTNAGG 1 cut(s) 710
Bse3DI GCAATG 1 cut(s) 903
BseAI TCCGGA 1 cut(s) 648
BseDI CCNNGG 4 cut(s) 30, 452, 511, 846
BseGI GGATG 5 cut(s) 56, 147, 302, 646, 804
BseLI CCNNNNNNNGG 2 cut(s) 389, 698
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 3 cut(s) 58, 63, 701
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 6 cut(s) 301, 304, 350, 644, 727, 806
BseX3I CGGCCG 1 cut(s) 600
BseXI GCAGC 6 cut(s) 190, 193, 726, 746, 774, 858
Bsh1285I CGRYCG 2 cut(s) 458, 603
BshFI GGCC 3 cut(s) 264, 602, 845
BshNI GGYRCC 1 cut(s) 392
BsiEI CGRYCG 2 cut(s) 458, 603
BsiHKAI GWGCWC 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 2 cut(s) 141, 649
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 2 cut(s) 389, 698
BsmAI GTCTC 3 cut(s) 27, 40, 58
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 715
BsnI GGCC 3 cut(s) 264, 602, 845
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 1 cut(s) 531
Bsp13I TCCGGA 1 cut(s) 648
Bsp143I GATC 4 cut(s) 489, 582, 606, 688
Bsp1720I GCTNAGC 1 cut(s) 44
BspANI GGCC 3 cut(s) 264, 602, 845
BspCNI CTCAG 3 cut(s) 57, 62, 702
BspEI TCCGGA 1 cut(s) 648
BspLI GGNNCC 5 cut(s) 145, 394, 540, 690, 844
BspMAI CTGCAG 1 cut(s) 764
BspMI ACCTGC 2 cut(s) 604, 690
BspOI GCTAGC 1 cut(s) 912
BspPI GGATC 4 cut(s) 497, 590, 683, 696
BspQI GCTCTTC 2 cut(s) 488, 848
BspT107I GGYRCC 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 903
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 4 cut(s) 30, 452, 511, 846
BssMI GATC 4 cut(s) 489, 582, 606, 688
BssNI GRCGYC 1 cut(s) 393
BssT1I CCWWGG 2 cut(s) 30, 846
Bst4CI ACNGT 1 cut(s) 930
Bst6I CTCTTC 4 cut(s) 176, 184, 488, 848
BstACI GRCGYC 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 910
BstDEI CTNAG 3 cut(s) 44, 49, 710
BstDSI CCRYGG 2 cut(s) 452, 511
BstF5I GGATG 5 cut(s) 56, 147, 302, 646, 804
BstH2I RGCGCY 4 cut(s) 396, 482, 740, 872
BstKTI GATC 4 cut(s) 492, 585, 609, 691
BstMAI GTCTC 3 cut(s) 27, 40, 58
BstMBI GATC 4 cut(s) 489, 582, 606, 688
BstMCI CGRYCG 2 cut(s) 458, 603
BstSFI CTRYAG 1 cut(s) 760
BstV1I GCAGC 6 cut(s) 190, 193, 726, 746, 774, 858
BstX2I RGATCY 2 cut(s) 489, 688
BstYI RGATCY 2 cut(s) 489, 688
BstZI CGGCCG 1 cut(s) 600
Bsu36I CCTNAGG 1 cut(s) 710
BsuRI GGCC 3 cut(s) 264, 602, 845
BtgI CCRYGG 2 cut(s) 452, 511
BtgZI GCGATG 1 cut(s) 391
BtrI CACGTC 2 cut(s) 286, 826
BtsCI GGATG 5 cut(s) 56, 147, 302, 646, 804
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 1 cut(s) 780
BveI ACCTGC 2 cut(s) 604, 690
Cac8I GCNNGC 1 cut(s) 910
Cfr13I GGNCC 2 cut(s) 679, 843
Cfr42I CCGCGG 2 cut(s) 455, 514
CseI GACGC 3 cut(s) 209, 281, 476
DdeI CTNAG 3 cut(s) 44, 49, 710
DinI GGCGCC 1 cut(s) 394
DpnI GATC 4 cut(s) 491, 584, 608, 690
DpnII GATC 4 cut(s) 489, 582, 606, 688
EaeI YGGCCR 1 cut(s) 600
EagI CGGCCG 1 cut(s) 600
Eam1104I CTCTTC 4 cut(s) 176, 184, 488, 848
EarI CTCTTC 4 cut(s) 176, 184, 488, 848
EciI GGCGGA 4 cut(s) 281, 307, 328, 845
Ecl136II GAGCTC 1 cut(s) 529
EclXI CGGCCG 1 cut(s) 600
Eco130I CCWWGG 2 cut(s) 30, 846
Eco24I GRGCYC 1 cut(s) 531
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 679
Eco52I CGGCCG 1 cut(s) 600
Eco53kI GAGCTC 1 cut(s) 529
Eco57I CTGAAG 2 cut(s) 494, 896
Eco81I CCTNAGG 1 cut(s) 710
Eco88I CYCGRG 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 529
EcoT14I CCWWGG 2 cut(s) 30, 846
EcoT38I GRGCYC 1 cut(s) 531
EgeI GGCGCC 1 cut(s) 394
EheI GGCGCC 1 cut(s) 394
ErhI CCWWGG 2 cut(s) 30, 846
Esp3I CGTCTC 1 cut(s) 27
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 715
FauI CCCGC 4 cut(s) 74, 550, 613, 884
FblI GTMKAC 1 cut(s) 695
FokI GGATG 5 cut(s) 43, 134, 289, 653, 811
FriOI GRGCYC 1 cut(s) 531
FspBI CTAG 2 cut(s) 674, 909
HaeII RGCGCY 4 cut(s) 396, 482, 740, 872
HaeIII GGCC 3 cut(s) 264, 602, 845
HapII CCGG 2 cut(s) 141, 649
HgaI GACGC 3 cut(s) 209, 281, 476
Hin1I GRCGYC 1 cut(s) 393
HincII GTYRAC 2 cut(s) 370, 696
HindII GTYRAC 2 cut(s) 370, 696
HinfI GANTC 3 cut(s) 176, 593, 745
HpaII CCGG 2 cut(s) 141, 649
HphI GGTGA 4 cut(s) 91, 574, 796, 892
Hpy166II GTNNAC 2 cut(s) 370, 696
Hpy188I TCNGA 4 cut(s) 17, 73, 163, 920
Hpy188III TCNNGA 4 cut(s) 433, 487, 649, 957
Hpy8I GTNNAC 2 cut(s) 370, 696
Hpy99I CGWCG 6 cut(s) 203, 368, 601, 697, 700, 958
HpyAV CCTTC 5 cut(s) 195, 331, 469, 559, 871
HpyCH4III ACNGT 1 cut(s) 930
HpyCH4IV ACGT 3 cut(s) 20, 285, 825
HpyCH4V TGCA 1 cut(s) 762
HpyF3I CTNAG 3 cut(s) 44, 49, 710
HpySE526I ACGT 3 cut(s) 20, 285, 825
Hsp92I GRCGYC 1 cut(s) 393
KasI GGCGCC 1 cut(s) 392
Kpn2I TCCGGA 1 cut(s) 648
KspI CCGCGG 2 cut(s) 455, 514
Kzo9I GATC 4 cut(s) 489, 582, 606, 688
LguI GCTCTTC 2 cut(s) 488, 848
LmnI GCTCC 6 cut(s) 18, 32, 74, 143, 526, 714
Lsp1109I GCAGC 6 cut(s) 190, 193, 726, 746, 774, 858
LweI GCATC 2 cut(s) 64, 311
MaeI CTAG 2 cut(s) 674, 909
MaeII ACGT 3 cut(s) 20, 285, 825
MalI GATC 4 cut(s) 491, 584, 608, 690
MbiI CCGCTC 1 cut(s) 69
MboI GATC 4 cut(s) 489, 582, 606, 688
MboII GAAGA 4 cut(s) 163, 171, 475, 865
MflI RGATCY 2 cut(s) 489, 688
MhlI GDGCHC 1 cut(s) 531
Mly113I GGCGCC 1 cut(s) 393
MlyI GAGTC 2 cut(s) 170, 587
MroI TCCGGA 1 cut(s) 648
MslI CAYNNNNRTG 1 cut(s) 557
MspA1I CMGCKG 2 cut(s) 454, 513
MspI CCGG 2 cut(s) 141, 649
NarI GGCGCC 1 cut(s) 393
NdeII GATC 4 cut(s) 489, 582, 606, 688
NheI GCTAGC 1 cut(s) 908
NlaIV GGNNCC 5 cut(s) 145, 394, 540, 690, 844
OliI CACNNNNGTG 1 cut(s) 557
PaqCI CACCTGC 1 cut(s) 604
PciSI GCTCTTC 2 cut(s) 488, 848
PcsI WCGNNNNNNNCGW 2 cut(s) 369, 701
PfeI GAWTC 1 cut(s) 745
PflFI GACNNNGTC 1 cut(s) 428
PleI GAGTC 2 cut(s) 170, 587
PluTI GGCGCC 1 cut(s) 396
PpsI GAGTC 2 cut(s) 170, 587
Psp124BI GAGCTC 1 cut(s) 531
PspN4I GGNNCC 5 cut(s) 145, 394, 540, 690, 844
PspPI GGNCC 2 cut(s) 679, 843
PstI CTGCAG 1 cut(s) 764
PsuI RGATCY 2 cut(s) 489, 688
PsyI GACNNNGTC 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 557
SacI GAGCTC 1 cut(s) 531
SacII CCGCGG 2 cut(s) 455, 514
SalI GTCGAC 1 cut(s) 694
SapI GCTCTTC 2 cut(s) 488, 848
Sau3AI GATC 4 cut(s) 489, 582, 606, 688
Sau96I GGNCC 2 cut(s) 679, 843
SchI GAGTC 2 cut(s) 170, 587
SduI GDGCHC 1 cut(s) 531
SfaNI GCATC 2 cut(s) 64, 311
SfcI CTRYAG 1 cut(s) 760
SfoI GGCGCC 1 cut(s) 394
Sfr303I CCGCGG 2 cut(s) 455, 514
SgrBI CCGCGG 2 cut(s) 455, 514
SgrDI CGTCGACG 1 cut(s) 694
SinI GGWCC 1 cut(s) 679
SmiMI CAYNNNNRTG 1 cut(s) 557
SspDI GGCGCC 1 cut(s) 392
SspMI CTAG 2 cut(s) 674, 909
SstI GAGCTC 1 cut(s) 531
StyI CCWWGG 2 cut(s) 30, 846
TaaI ACNGT 1 cut(s) 930
TaiI ACGT 3 cut(s) 23, 288, 828
TaqI TCGA 6 cut(s) 108, 174, 423, 596, 695, 810
TauI GCSGC 5 cut(s) 123, 240, 264, 344, 516
TfiI GAWTC 1 cut(s) 745
TscAI CASTG 1 cut(s) 780
TseI GCWGC 6 cut(s) 203, 206, 739, 759, 762, 871
TspGWI ACGGA 1 cut(s) 681
TspRI CASTG 1 cut(s) 780
Tth111I GACNNNGTC 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 679
XmiI GTMKAC 1 cut(s) 695
XspI CTAG 2 cut(s) 674, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.