Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015436

Physical Location & Seq

Genomic Coordinates Reverse (-)

2709525 .. 2711000

Gene Structure 1476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAACGACTTGATGACGAAATCGTTTATGAGTTACGTTGACTTGAAAAAAGCAGCGATGAAGGATATGGAAGCAGGACCTGACTTTGATCTTGAGATGGCTTCTACGAAAGCAGACAAGATGGATGAGAATCTGTCATCTTTCTTAGAAGAAGCAGAGTATGTGAAAGCAGAGATGGGTTTGATTAGTGAGACGCTGGCTCGGATCGAACAGTACCATGAAGAGAGTAAAGGTGTTCACAAGGCAGAGTCTGTGAAGTCTCTTCGTAACAAGATCTCTAACGAGATTGTGTCTGGTTTGAGGAAGGCGAAATCGATTAAGTCGAAGCTGGAAGAGATGGATAAAGCCAACAAGGAGATTAAAAGGCTCTCTGGGACTCCGGTTTATAGGAGCAGAACCGCTGTGACTAATGGGCTGAGGAAGAAACTTAAGGAAGTGATGATGGAGTTTCAGGGGCTGAGGCAAAAGATGATGAGTGAGTACAAGGAGACTGTTGAGAGAAGGTACTTCACTGTCACTGGAGAACATGCTAATGATGAGATGATTGAGAAGATCATCACTGATAACGCTGGAGGTGAAGAGTTTCTCACGCGAGCAATTCAGGAACATGGTAAAGGAAAGGTCTTGGAAACTGTGGTTGAGATTCAAGACAGGTATGATGCAGCAAAGGAGATTGAGAAGAGTCTGTTGGAGCTTCACCAAGTGTTTCTTGATATGGCTGTGATGGTTGAATCGCAAGGTGAACAGATGGACGAGATCGAGCATCATGTGATTAATGCGAGCCATTACGTGGCTGATGGAGCTAATGAGCTGAAGACTGCAAAGAGTCATCAGAGAAACAGCAGAAAATGGATGTGCATTGGTATCATTGTGCTGCTTTTGATCATTCTCATTGTTGTCATCCCCATCATTACCAGTTTCAGCTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0055044 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

310

Amino Acids

35.27

Weight (kDa)

5.82

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	42 - 200	8.7e-44	Syntaxin
SNARE	PF05739	248 - 300	5.3e-18	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08560
fragaria_vesca	FvH4_7g04270
malus_domestica	MD12G1000200.v1.1
prunus_persica	Prupe.7G000700_v2.0.a1
pyrus_communis	pycom12g00030
rosa_chinensis	RchiOBHm_Chr1g0329221
rosa_laevigata	RLG00000029909
rosa_multiflora	Rmu_sc0000203.1_g000003 Rmu_sc0010272.1_g000006
rosa_roxburghii	Rroxscaffold_4G00321310
rosa_rugosa	Rorug01G0077200
rosa_samantha	Rh1AG096200 Rh1BG077000 Rh1CG093000 Rh1DG099500
rosa_wichuraiana	Rw1G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	790
AccII	CGCG	1 cut(s)	592
AciI	CCGC	1 cut(s)	399
AclWI	GGATC	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	833
AdeI	CACNNNGTG	1 cut(s)	703
AfaI	GTAC	3 cut(s)	215, 482, 506
AfiI	CCNNNNNNNGG	1 cut(s)	790
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	46, 647, 731
AjuI	GAANNNNNNNTTGG	2 cut(s)	671, 703
AluBI	AGCT	5 cut(s)	328, 694, 803, 811, 924
AluI	AGCT	5 cut(s)	328, 694, 803, 811, 924
Alw26I	GTCTC	3 cut(s)	185, 264, 482
AlwI	GGATC	1 cut(s)	212
AlwNI	CAGNNNCTG	3 cut(s)	80, 251, 457
ApeKI	GCWGC	3 cut(s)	53, 662, 874
AseI	ATTAAT	1 cut(s)	774
Asp700I	GAANNNNTTC	1 cut(s)	582
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	3 cut(s)	587, 689, 752
AvaII	GGWCC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	821
BbvCI	CCTCAGC	2 cut(s)	416, 458
BbvI	GCAGC	3 cut(s)	65, 674, 861
BccI	CCATC	9 cut(s)	91, 115, 169, 331, 436, 718, 742, 791, 914
BclI	TGATCA	1 cut(s)	882
BcoDI	GTCTC	3 cut(s)	185, 264, 482
BfrI	CTTAAG	1 cut(s)	428
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	3 cut(s)	54, 663, 875
BlsI	GCNGC	3 cut(s)	55, 664, 876
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmsI	GCATC	2 cut(s)	649, 772
BpiI	GAAGAC	1 cut(s)	821
BpmI	CTGGAG	2 cut(s)	540, 591
Bpu10I	CCTNAGC	2 cut(s)	416, 458
BpuEI	CTTGAG	1 cut(s)	113
Bsa29I	ATCGAT	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	790
BsaBI	GATNNNNATC	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	1 cut(s)	790
Bse1I	ACTGG	2 cut(s)	523, 915
Bse8I	GATNNNNATC	1 cut(s)	129
BseCI	ATCGAT	1 cut(s)	314
BseGI	GGATG	3 cut(s)	130, 858, 900
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	790
BseMII	CTCAG	2 cut(s)	407, 449
BseNI	ACTGG	2 cut(s)	523, 915
BseXI	GCAGC	3 cut(s)	65, 674, 861
Bsh1236I	CGCG	1 cut(s)	592
BshVI	ATCGAT	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	790
BsmAI	GTCTC	3 cut(s)	185, 264, 482
BsmBI	CGTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	388
Bsp143I	GATC	6 cut(s)	88, 204, 273, 552, 756, 882
BspACI	CCGC	1 cut(s)	399
BspCNI	CTCAG	2 cut(s)	408, 450
BspDI	ATCGAT	1 cut(s)	314
BspFNI	CGCG	1 cut(s)	592
BspPI	GGATC	1 cut(s)	212
BspTI	CTTAAG	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	523, 915
BssMI	GATC	6 cut(s)	88, 204, 273, 552, 756, 882
Bst4CI	ACNGT	4 cut(s)	213, 493, 514, 634
Bst6I	CTCTTC	5 cut(s)	216, 267, 327, 573, 674
BstAFI	CTTAAG	1 cut(s)	428
BstBAI	YACGTR	1 cut(s)	790
BstC8I	GCNNGC	3 cut(s)	198, 594, 781
BstDEI	CTNAG	3 cut(s)	145, 416, 458
BstF5I	GGATG	3 cut(s)	130, 858, 900
BstFNI	CGCG	1 cut(s)	592
BstKTI	GATC	6 cut(s)	91, 207, 276, 555, 759, 885
BstMAI	GTCTC	3 cut(s)	185, 264, 482
BstMBI	GATC	6 cut(s)	88, 204, 273, 552, 756, 882
BstMWI	GCNNNNNNNGC	1 cut(s)	800
BstNSI	RCATGY	1 cut(s)	530
BstUI	CGCG	1 cut(s)	592
BstV1I	GCAGC	3 cut(s)	65, 674, 861
BstV2I	GAAGAC	1 cut(s)	821
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
Bsu15I	ATCGAT	1 cut(s)	314
BsuTUI	ATCGAT	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	130, 858, 900
BtsIMutI	CAGTG	3 cut(s)	510, 516, 558
Cac8I	GCNNGC	3 cut(s)	198, 594, 781
CaiI	CAGNNNCTG	3 cut(s)	80, 251, 457
Cfr13I	GGNCC	1 cut(s)	77
ClaI	ATCGAT	1 cut(s)	314
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	3 cut(s)	214, 481, 505
CviAII	CATG	4 cut(s)	218, 527, 608, 767
CviQI	GTAC	3 cut(s)	214, 481, 505
DdeI	CTNAG	3 cut(s)	145, 416, 458
DpnI	GATC	6 cut(s)	90, 206, 275, 554, 758, 884
DpnII	GATC	6 cut(s)	88, 204, 273, 552, 756, 882
DraIII	CACNNNGTG	1 cut(s)	703
Eam1104I	CTCTTC	5 cut(s)	216, 267, 327, 573, 674
EarI	CTCTTC	5 cut(s)	216, 267, 327, 573, 674
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	833
EcoO109I	RGGNCCY	1 cut(s)	77
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	4 cut(s)	221, 530, 611, 770
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	4 cut(s)	217, 526, 607, 766
FbaI	TGATCA	1 cut(s)	882
Fnu4HI	GCNGC	3 cut(s)	54, 663, 875
FokI	GGATG	3 cut(s)	137, 865, 887
Fsp4HI	GCNGC	3 cut(s)	54, 663, 875
GluI	GCNGC	3 cut(s)	54, 663, 875
GsuI	CTGGAG	2 cut(s)	540, 591
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	1 cut(s)	202
Hin1II	CATG	4 cut(s)	221, 530, 611, 770
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	7 cut(s)	130, 248, 376, 643, 682, 731, 826
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	3 cut(s)	587, 689, 752
Hpy166II	GTNNAC	3 cut(s)	40, 238, 743
Hpy188I	TCNGA	2 cut(s)	204, 834
Hpy188III	TCNNGA	5 cut(s)	92, 602, 647, 710, 930
Hpy8I	GTNNAC	3 cut(s)	40, 238, 743
HpyAV	CCTTC	3 cut(s)	55, 298, 495
HpyCH4III	ACNGT	4 cut(s)	213, 493, 514, 634
HpyCH4IV	ACGT	2 cut(s)	36, 789
HpyCH4V	TGCA	3 cut(s)	662, 821, 858
HpyF10VI	GCNNNNNNNGC	1 cut(s)	800
HpyF3I	CTNAG	3 cut(s)	145, 416, 458
HpySE526I	ACGT	2 cut(s)	36, 789
Hsp92II	CATG	4 cut(s)	221, 530, 611, 770
Ksp22I	TGATCA	1 cut(s)	882
Kzo9I	GATC	6 cut(s)	88, 204, 273, 552, 756, 882
LmnI	GCTCC	3 cut(s)	390, 691, 800
Lsp1109I	GCAGC	3 cut(s)	65, 674, 861
LweI	GCATC	2 cut(s)	649, 772
MaeII	ACGT	2 cut(s)	36, 789
MaeIII	GTNAC	4 cut(s)	32, 266, 403, 514
MalI	GATC	6 cut(s)	90, 206, 275, 554, 758, 884
MboI	GATC	6 cut(s)	88, 204, 273, 552, 756, 882
MflI	RGATCY	1 cut(s)	273
MluCI	AATT	1 cut(s)	597
MlyI	GAGTC	4 cut(s)	257, 370, 691, 835
MmeI	TCCRAC	1 cut(s)	669
MnlI	CCTC	4 cut(s)	294, 411, 453, 566
MroXI	GAANNNNTTC	1 cut(s)	582
MseI	TTAA	4 cut(s)	318, 360, 429, 774
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	592
MwoI	GCNNNNNNNGC	1 cut(s)	800
NdeII	GATC	6 cut(s)	88, 204, 273, 552, 756, 882
NlaIII	CATG	4 cut(s)	221, 530, 611, 770
NmuCI	GTSAC	2 cut(s)	403, 514
NspI	RCATGY	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	3 cut(s)	130, 643, 731
PflMI	CCANNNNNTGG	1 cut(s)	790
PkrI	GCNGC	3 cut(s)	55, 664, 876
PleI	GAGTC	4 cut(s)	256, 370, 690, 834
PpsI	GAGTC	4 cut(s)	256, 370, 690, 834
Ppu21I	YACGTR	1 cut(s)	790
PpuMI	RGGWCCY	1 cut(s)	77
PshBI	ATTAAT	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	77
PspPPI	RGGWCCY	1 cut(s)	77
PstNI	CAGNNNCTG	3 cut(s)	80, 251, 457
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	3 cut(s)	215, 482, 506
RsaNI	GTAC	3 cut(s)	214, 481, 505
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	4 cut(s)	318, 360, 429, 774
SatI	GCNGC	3 cut(s)	54, 663, 875
Sau3AI	GATC	6 cut(s)	88, 204, 273, 552, 756, 882
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	4 cut(s)	257, 370, 691, 835
SfaNI	GCATC	2 cut(s)	649, 772
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	2 cut(s)	92, 428
SmoI	CTYRAG	2 cut(s)	92, 428
Sse9I	AATT	1 cut(s)	597
SsiI	CCGC	1 cut(s)	399
TaaI	ACNGT	4 cut(s)	213, 493, 514, 634
TaiI	ACGT	2 cut(s)	39, 792
TaqI	TCGA	4 cut(s)	207, 314, 323, 759
TasI	AATT	1 cut(s)	597
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	3 cut(s)	130, 643, 731
Tru1I	TTAA	4 cut(s)	318, 360, 429, 774
Tru9I	TTAA	4 cut(s)	318, 360, 429, 774
TscAI	CASTG	3 cut(s)	517, 523, 565
TseFI	GTSAC	2 cut(s)	403, 514
TseI	GCWGC	3 cut(s)	53, 662, 874
Tsp45I	GTSAC	2 cut(s)	403, 514
TspDTI	ATGAA	3 cut(s)	17, 74, 234
TspRI	CASTG	3 cut(s)	517, 523, 565
Van91I	CCANNNNNTGG	1 cut(s)	790
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	77
VspI	ATTAAT	1 cut(s)	774
XceI	RCATGY	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.