Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0015436

Physical Location & Seq

Genomic Coordinates Forward (+)

12595789 .. 12597828

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0077200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCTTTGCTTTATTGGTTTTGGTACTCAGCTTCTTAATCATATATTAAATACTCAACATGGGAAGAAAATTGCTGTGATATTAAACGAGTTTGGTGAGGAAATTGGGGTTGAGAGGGCAATGATAAACGAAGGAGATGGTGGTGCTCTTGTGGAAGAGTGGGTTGAGTTGGCAAATGGGTGTATATGTTGTACTGTGAAGCACAGTTTGGTGCAAGCGCTAGAGCAACTTGTGCAGAGAAAAGAAAGGTTTGAGGTTGTGGATGCCAAGAACCTCCGTTTTCAGCTGAGCGAGAATAAAAGTTCATCCTCATTTCCTGAAGCATATATGCAGATTGCATTTGCAAGGGTTCTAAAGATTATCTGGAGGAACTCGAAAAGGAGATACATACATAGTATTAATTTGCTTGCTTGTATCATCCGTTCTGTTCGTAGTCAAGTCGACATGTCTAAGATATTGGACTGTCGGGCCTATGATGCTACGCATGCTGCTCATTTAGAATCATTATTAGAAGAAAGTCGTACTTTATCTACCCCGGATCTCCATGATAGTGGTGTGCGAACCTTATGCATTTGTGAGCAACAGAAGGTTGATCTTGAAAAGGTCCGCTTATGGCTCGAGGAGATTCTTTGGGAAAAGAAATATGGCATGGATGTGTATCGCTGCAAAGGGGTTTTGAGTGTTCACAGTTCAAACCAACAGGTATTGTTTAATGTTATAACTTATGCTGCAATATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0055044 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

246

Amino Acids

28.12

Weight (kDa)

6.71

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cobW	PF02492	4 - 87	7.9e-20	CobW/HypB/UreG, nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08560
fragaria_vesca	FvH4_7g04270
malus_domestica	MD12G1000200.v1.1
prunus_persica	Prupe.7G000700_v2.0.a1
pyrus_communis	pycom12g00030
rosa_chinensis	RchiOBHm_Chr1g0329221
rosa_laevigata	RLG00000029909
rosa_multiflora	Rmu_sc0000203.1_g000003 Rmu_sc0010272.1_g000006
rosa_roxburghii	Rroxscaffold_4G00321310
rosa_rugosa	Rorug01G0077200
rosa_samantha	Rh1AG096200 Rh1BG077000 Rh1CG093000 Rh1DG099500
rosa_wichuraiana	Rw1G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	719
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	1 cut(s)	607
AclWI	GGATC	1 cut(s)	546
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	3 cut(s)	25, 193, 523
AfeI	AGCGCT	1 cut(s)	219
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	2 cut(s)	599, 693
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	2 cut(s)	31, 286
AluI	AGCT	2 cut(s)	31, 286
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	546
Ama87I	CYCGRG	1 cut(s)	617
Aor51HI	AGCGCT	1 cut(s)	219
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	3 cut(s)	488, 663, 728
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	468, 604
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	604
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	475, 650, 715
BccI	CCATC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BcnI	CCSGG	1 cut(s)	536
BfaI	CTAG	2 cut(s)	221, 739
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	3 cut(s)	489, 664, 729
BlpI	GCTNAGC	1 cut(s)	287
BlsI	GCNGC	3 cut(s)	490, 665, 730
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	1 cut(s)	604
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	2 cut(s)	468, 604
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	2 cut(s)	253, 466
BpmI	CTGGAG	1 cut(s)	385
Bpu1102I	GCTNAGC	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	657
BsaJI	CCNNGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	4 cut(s)	268, 305, 417, 658
BseJI	GATNNNNATC	1 cut(s)	657
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	41, 278
BseRI	GAGGAG	1 cut(s)	635
BseXI	GCAGC	3 cut(s)	475, 650, 715
BsgI	GTGCAG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	536
BsnI	GGCC	1 cut(s)	470
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	538, 592
Bsp1720I	GCTNAGC	1 cut(s)	287
BspACI	CCGC	1 cut(s)	607
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	2 cut(s)	40, 279
BspPI	GGATC	1 cut(s)	546
BsrDI	GCAATG	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	2 cut(s)	538, 592
Bst4CI	ACNGT	4 cut(s)	196, 206, 464, 689
Bst6I	CTCTTC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	216, 408, 486
BstDEI	CTNAG	3 cut(s)	27, 287, 450
BstF5I	GGATG	4 cut(s)	268, 305, 417, 658
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	2 cut(s)	541, 595
BstMBI	GATC	2 cut(s)	538, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 476, 485
BstNSI	RCATGY	2 cut(s)	448, 488
BstSCI	CCNGG	1 cut(s)	534
BstV1I	GCAGC	3 cut(s)	475, 650, 715
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	470
BtsCI	GGATG	4 cut(s)	268, 305, 417, 658
Cac8I	GCNNGC	3 cut(s)	216, 408, 486
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	468, 604
Csp6I	GTAC	3 cut(s)	24, 192, 522
CviAII	CATG	5 cut(s)	59, 445, 485, 545, 649
CviJI	RGCY	4 cut(s)	31, 286, 470, 616
CviKI_1	RGCY	4 cut(s)	31, 286, 470, 616
CviQI	GTAC	3 cut(s)	24, 192, 522
DdeI	CTNAG	3 cut(s)	27, 287, 450
DpnI	GATC	2 cut(s)	540, 594
DpnII	GATC	2 cut(s)	538, 592
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	604
Eco47III	AGCGCT	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	617
EcoT22I	ATGCAT	1 cut(s)	572
FaeI	CATG	5 cut(s)	62, 448, 488, 548, 652
FalI	AAGNNNNNCTT	4 cut(s)	508, 540, 593, 625
FatI	CATG	5 cut(s)	58, 444, 484, 544, 648
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	489, 664, 729
FokI	GGATG	4 cut(s)	275, 292, 404, 665
Fsp4HI	GCNGC	3 cut(s)	489, 664, 729
FspBI	CTAG	2 cut(s)	221, 739
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	3 cut(s)	489, 664, 729
GsuI	CTGGAG	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	536
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	5 cut(s)	62, 448, 488, 548, 652
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	500, 625
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	442, 685
Hpy188III	TCNNGA	3 cut(s)	317, 364, 596
Hpy8I	GTNNAC	2 cut(s)	442, 685
HpyAV	CCTTC	2 cut(s)	125, 580
HpyCH4III	ACNGT	4 cut(s)	196, 206, 464, 689
HpyCH4V	TGCA	8 cut(s)	214, 235, 331, 338, 344, 570, 666, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 476, 485
HpyF3I	CTNAG	3 cut(s)	27, 287, 450
Hsp92II	CATG	5 cut(s)	62, 448, 488, 548, 652
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	538, 592
LpnPI	CCDG	4 cut(s)	330, 349, 549, 686
Lsp1109I	GCAGC	3 cut(s)	475, 650, 715
LweI	GCATC	2 cut(s)	253, 466
MaeI	CTAG	2 cut(s)	221, 739
MalI	GATC	2 cut(s)	540, 594
MboI	GATC	2 cut(s)	538, 592
MboII	GAAGA	3 cut(s)	76, 167, 524
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	3 cut(s)	69, 102, 400
MnlI	CCTC	7 cut(s)	91, 108, 247, 284, 319, 360, 613
Mph1103I	ATGCAT	1 cut(s)	572
MseI	TTAA	5 cut(s)	36, 47, 83, 399, 711
MslI	CAYNNNNRTG	2 cut(s)	549, 653
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	232, 476, 485
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	2 cut(s)	538, 592
NlaIII	CATG	5 cut(s)	62, 448, 488, 548, 652
NsiI	ATGCAT	1 cut(s)	572
NspI	RCATGY	2 cut(s)	448, 488
PaeI	GCATGC	1 cut(s)	488
PaeR7I	CTCGAG	1 cut(s)	617
PciI	ACATGT	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	500, 625
PkrI	GCNGC	3 cut(s)	490, 665, 730
PscI	ACATGT	1 cut(s)	444
PshBI	ATTAAT	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	719
PspPI	GGNCC	2 cut(s)	468, 604
PspXI	VCTCGAGB	1 cut(s)	617
PsrI	GAACNNNNNNTAC	2 cut(s)	406, 438
PsuI	RGATCY	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	3 cut(s)	25, 193, 523
RsaNI	GTAC	3 cut(s)	24, 192, 522
RseI	CAYNNNNRTG	2 cut(s)	549, 653
SalI	GTCGAC	1 cut(s)	440
SaqAI	TTAA	5 cut(s)	36, 47, 83, 399, 711
SatI	GCNGC	3 cut(s)	489, 664, 729
Sau3AI	GATC	2 cut(s)	538, 592
Sau96I	GGNCC	2 cut(s)	468, 604
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	9 cut(s)	33, 251, 258, 276, 288, 566, 591, 606, 705
SfaNI	GCATC	2 cut(s)	253, 466
Sfr274I	CTCGAG	1 cut(s)	617
SinI	GGWCC	1 cut(s)	604
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	2 cut(s)	549, 653
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SphI	GCATGC	1 cut(s)	488
Sse9I	AATT	3 cut(s)	69, 102, 400
SsiI	CCGC	1 cut(s)	607
SspI	AATATT	1 cut(s)	735
SspMI	CTAG	2 cut(s)	221, 739
StyD4I	CCNGG	1 cut(s)	534
TaaI	ACNGT	4 cut(s)	196, 206, 464, 689
TaqI	TCGA	3 cut(s)	374, 441, 618
TasI	AATT	3 cut(s)	69, 102, 400
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	500, 625
Tru1I	TTAA	5 cut(s)	36, 47, 83, 399, 711
Tru9I	TTAA	5 cut(s)	36, 47, 83, 399, 711
TseI	GCWGC	3 cut(s)	488, 663, 728
TspDTI	ATGAA	1 cut(s)	294
TspGWI	ACGGA	2 cut(s)	266, 410
VpaK11BI	GGWCC	1 cut(s)	604
VspI	ATTAAT	1 cut(s)	399
XceI	RCATGY	2 cut(s)	448, 488
XhoI	CTCGAG	1 cut(s)	617
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	2 cut(s)	221, 739
Zsp2I	ATGCAT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.