Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000203.1

Orthogroup ID

OG0015436

Physical Location & Seq

Genomic Coordinates Forward (+)

14431 .. 15342

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000203.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgacgaaatcgttcaccaactatgtggatctaaagaaagaggcaatgaaagacatggaccttgaagctgggaatttggagctgtcaacaaacatgaacagtgacctgggtctgttcctggaagaggcagaaaaggtgaagcaggagatggcttgtgtgcgtgatattctgggccgattacagcaagccaacgaggagagcaagtccctccacaaatcggaggcgttgcaatcgttgcgtagccgcatcaatgccgacattgtgagtgttctgaagcaggccaggacgattcgatgtcatctggaagacatggaccgtgccaatgccgccaataagaggctctcggctgcgaaagaaggcaccccgatttacaggacgaggatggcggtcaccaacgggctgcgcaagaagctgaaggagcttatgatggagtttcagggtctgaggcagaggacgatgagcgagtacaaggagactgtggggaggaggtatttcacagtgacaggagggaaggcggatgaggaggtgatcgaaaagatcatctcgaatggaggggaggagttcatggggagagccatacaggaacatgggagggggaaggtgctggaaactgtggttgagatacaggacaggcacgacacggcaaaggatatcgaaaagagcttgctggagctgcatcaggtgttcttggacatggctgtgatggtggaggctcaaggtgagcagatggatgacattgaacaacatgtcataaatgcttcccactatgtcaaggctggaaccaaacaactcaacactgccaagggataccagaggagcaccaggaagtggatgtgtatcggaatcattattctcctcatactcattcttgtaattgtcatccccattgccaccagcttcgcccattcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0055044 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

303

Amino Acids

34.33

Weight (kDa)

7.1

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08560
fragaria_vesca	FvH4_7g04270
malus_domestica	MD12G1000200.v1.1
prunus_persica	Prupe.7G000700_v2.0.a1
pyrus_communis	pycom12g00030
rosa_chinensis	RchiOBHm_Chr1g0329221
rosa_laevigata	RLG00000029909
rosa_multiflora	Rmu_sc0000203.1_g000003 Rmu_sc0010272.1_g000006
rosa_roxburghii	Rroxscaffold_4G00321310
rosa_rugosa	Rorug01G0077200
rosa_samantha	Rh1AG096200 Rh1BG077000 Rh1CG093000 Rh1DG099500
rosa_wichuraiana	Rw1G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	828
AciI	CCGC	4 cut(s)	244, 327, 386, 515
AclWI	GGATC	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	2 cut(s)	293, 434
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	4 cut(s)	124, 217, 336, 828
AflIII	ACRYGT	1 cut(s)	745
AgsI	TTSAA	2 cut(s)	65, 740
AjnI	CCWGG	4 cut(s)	105, 117, 281, 821
AluBI	AGCT	7 cut(s)	68, 82, 412, 421, 663, 673, 897
AluI	AGCT	7 cut(s)	68, 82, 412, 421, 663, 673, 897
Alw21I	GWGCWC	1 cut(s)	821
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	36
AlwNI	CAGNNNCTG	1 cut(s)	442
AoxI	GGCC	2 cut(s)	172, 279
ApeKI	GCWGC	3 cut(s)	347, 400, 673
ApoI	RAATTY	1 cut(s)	73
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	3 cut(s)	58, 172, 313
AsuHPI	GGTGA	5 cut(s)	7, 148, 382, 538, 731
AvaII	GGWCC	2 cut(s)	58, 313
BanI	GGYRCC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	821
BbvI	GCAGC	3 cut(s)	334, 387, 660
BccI	CCATC	5 cut(s)	142, 376, 421, 697, 721
BceAI	ACGGC	1 cut(s)	657
BciT130I	CCWGG	4 cut(s)	107, 119, 283, 823
BciVI	GTATCC	1 cut(s)	800
BcoDI	GTCTC	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	800
BisI	GCNGC	5 cut(s)	244, 327, 348, 401, 674
BlsI	GCNGC	5 cut(s)	245, 328, 349, 402, 675
Bme1390I	CCNGG	4 cut(s)	107, 119, 283, 823
Bme18I	GGWCC	2 cut(s)	58, 313
BmgT120I	GGNCC	3 cut(s)	58, 172, 313
BmiI	GGNNCC	2 cut(s)	361, 781
BmrFI	CCNGG	4 cut(s)	107, 119, 283, 823
BmsI	GCATC	2 cut(s)	255, 685
BoxI	GACNNNNGTC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	699
BsaBI	GATNNNNATC	1 cut(s)	836
BsaJI	CCNNGG	2 cut(s)	106, 801
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 217, 336, 828
Bse3DI	GCAATG	2 cut(s)	51, 885
Bse8I	GATNNNNATC	1 cut(s)	836
BseBI	CCWGG	4 cut(s)	107, 119, 283, 823
BseDI	CCNNGG	2 cut(s)	106, 801
BseGI	GGATG	5 cut(s)	387, 523, 736, 837, 879
BseJI	GATNNNNATC	1 cut(s)	836
BseLI	CCNNNNNNNGG	4 cut(s)	124, 217, 336, 828
BseMI	GCAATG	2 cut(s)	51, 885
BseMII	CTCAG	1 cut(s)	434
BseRI	GAGGAG	6 cut(s)	209, 499, 536, 572, 829, 845
BseXI	GCAGC	3 cut(s)	334, 387, 660
BseYI	CCCAGC	1 cut(s)	68
BshFI	GGCC	2 cut(s)	174, 281
BshNI	GGYRCC	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	821
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	4 cut(s)	124, 217, 336, 828
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	174, 281
Bsp1286I	GDGCHC	1 cut(s)	821
Bsp143I	GATC	3 cut(s)	28, 528, 537
BspACI	CCGC	4 cut(s)	244, 327, 386, 515
BspANI	GGCC	2 cut(s)	174, 281
BspCNI	CTCAG	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	361, 781
BspPI	GGATC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	359
BsrDI	GCAATG	2 cut(s)	51, 885
BssECI	CCNNGG	2 cut(s)	106, 801
BssMI	GATC	3 cut(s)	28, 528, 537
BssT1I	CCWWGG	1 cut(s)	801
Bst2UI	CCWGG	4 cut(s)	107, 119, 283, 823
Bst4CI	ACNGT	5 cut(s)	101, 317, 478, 499, 613
Bst6I	CTCTTC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstC8I	GCNNGC	3 cut(s)	186, 279, 665
BstDEI	CTNAG	1 cut(s)	443
BstEII	GGTNACC	1 cut(s)	388
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	5 cut(s)	387, 523, 736, 837, 879
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	3 cut(s)	31, 531, 540
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	3 cut(s)	28, 528, 537
BstMWI	GCNNNNNNNGC	5 cut(s)	235, 326, 409, 418, 673
BstNI	CCWGG	4 cut(s)	107, 119, 283, 823
BstNSI	RCATGY	1 cut(s)	749
BstPAI	GACNNNNGTC	1 cut(s)	108
BstPI	GGTNACC	1 cut(s)	388
BstSCI	CCNGG	4 cut(s)	105, 117, 281, 821
BstV1I	GCAGC	3 cut(s)	334, 387, 660
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	28
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	28
BsuI	GTATCC	1 cut(s)	800
BsuRI	GGCC	2 cut(s)	174, 281
BtsCI	GGATG	5 cut(s)	387, 523, 736, 837, 879
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	3 cut(s)	106, 504, 795
Cac8I	GCNNGC	3 cut(s)	186, 279, 665
CaiI	CAGNNNCTG	1 cut(s)	442
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	3 cut(s)	58, 172, 313
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	7 cut(s)	55, 94, 310, 565, 587, 694, 746
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	3 cut(s)	30, 530, 539
DpnII	GATC	3 cut(s)	28, 528, 537
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EciI	GGCGGA	1 cut(s)	530
Eco130I	CCWWGG	1 cut(s)	801
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	2 cut(s)	58, 313
Eco57I	CTGAAG	2 cut(s)	293, 434
Eco91I	GGTNACC	1 cut(s)	388
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoO65I	GGTNACC	1 cut(s)	388
EcoRII	CCWGG	4 cut(s)	105, 117, 281, 821
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	801
ErhI	CCWWGG	1 cut(s)	801
FaeI	CATG	7 cut(s)	58, 97, 313, 568, 590, 697, 749
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	7 cut(s)	54, 93, 309, 564, 586, 693, 745
Fnu4HI	GCNGC	5 cut(s)	244, 327, 348, 401, 674
FokI	GGATG	5 cut(s)	394, 530, 743, 844, 866
Fsp4HI	GCNGC	5 cut(s)	244, 327, 348, 401, 674
FspI	TGCGCA	1 cut(s)	404
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	5 cut(s)	244, 327, 348, 401, 674
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	689
HaeIII	GGCC	2 cut(s)	174, 281
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	7 cut(s)	58, 97, 313, 568, 590, 697, 749
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	289, 843
HphI	GGTGA	5 cut(s)	7, 148, 382, 538, 731
Hpy166II	GTNNAC	2 cut(s)	15, 87
Hpy188I	TCNGA	4 cut(s)	220, 273, 444, 842
Hpy188III	TCNNGA	2 cut(s)	302, 544
Hpy8I	GTNNAC	2 cut(s)	15, 87
HpyAV	CCTTC	4 cut(s)	350, 409, 505, 592
HpyCH4III	ACNGT	5 cut(s)	101, 317, 478, 499, 613
HpyCH4V	TGCA	2 cut(s)	229, 676
HpyF10VI	GCNNNNNNNGC	5 cut(s)	235, 326, 409, 418, 673
HpyF3I	CTNAG	1 cut(s)	443
Hsp92II	CATG	7 cut(s)	58, 97, 313, 568, 590, 697, 749
HspAI	GCGC	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	28, 528, 537
LmnI	GCTCC	4 cut(s)	79, 418, 670, 816
Lsp1109I	GCAGC	3 cut(s)	334, 387, 660
LweI	GCATC	2 cut(s)	255, 685
MaeIII	GTNAC	3 cut(s)	101, 388, 499
MalI	GATC	3 cut(s)	30, 530, 539
MboI	GATC	3 cut(s)	28, 528, 537
MboII	GAAGA	2 cut(s)	134, 317
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	821
MluCI	AATT	2 cut(s)	73, 873
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	910
MslI	CAYNNNNRTG	1 cut(s)	698
MspR9I	CCNGG	4 cut(s)	107, 119, 283, 823
MvaI	CCWGG	4 cut(s)	107, 119, 283, 823
MwoI	GCNNNNNNNGC	5 cut(s)	235, 326, 409, 418, 673
NdeII	GATC	3 cut(s)	28, 528, 537
NlaIII	CATG	7 cut(s)	58, 97, 313, 568, 590, 697, 749
NlaIV	GGNNCC	2 cut(s)	361, 781
NmeAIII	GCCGAG	1 cut(s)	323
NmuCI	GTSAC	3 cut(s)	101, 388, 499
NsbI	TGCGCA	1 cut(s)	404
NspI	RCATGY	1 cut(s)	749
PciI	ACATGT	1 cut(s)	745
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	289, 843
PflMI	CCANNNNNTGG	1 cut(s)	828
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	245, 328, 349, 402, 675
PscI	ACATGT	1 cut(s)	745
PshAI	GACNNNNGTC	1 cut(s)	108
Psp6I	CCWGG	4 cut(s)	105, 117, 281, 821
PspEI	GGTNACC	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	4 cut(s)	105, 117, 281, 821
PspN4I	GGNNCC	2 cut(s)	361, 781
PspPI	GGNCC	3 cut(s)	58, 172, 313
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	698
SaqAI	TTAA	1 cut(s)	910
SatI	GCNGC	5 cut(s)	244, 327, 348, 401, 674
Sau3AI	GATC	3 cut(s)	28, 528, 537
Sau96I	GGNCC	3 cut(s)	58, 172, 313
ScrFI	CCNGG	4 cut(s)	107, 119, 283, 823
SduI	GDGCHC	1 cut(s)	821
SfaNI	GCATC	2 cut(s)	255, 685
SinI	GGWCC	2 cut(s)	58, 313
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	714
SmoI	CTYRAG	1 cut(s)	714
Sse9I	AATT	2 cut(s)	73, 873
SsiI	CCGC	4 cut(s)	244, 327, 386, 515
StyD4I	CCNGG	4 cut(s)	105, 117, 281, 821
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	5 cut(s)	101, 317, 478, 499, 613
TaqI	TCGA	4 cut(s)	292, 531, 545, 654
TasI	AATT	2 cut(s)	73, 873
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	2 cut(s)	246, 329
TfiI	GAWTC	2 cut(s)	289, 843
Tru1I	TTAA	1 cut(s)	910
Tru9I	TTAA	1 cut(s)	910
TscAI	CASTG	3 cut(s)	106, 504, 802
TseFI	GTSAC	3 cut(s)	101, 388, 499
TseI	GCWGC	3 cut(s)	347, 400, 673
Tsp45I	GTSAC	3 cut(s)	101, 388, 499
TspDTI	ATGAA	3 cut(s)	62, 110, 553
TspRI	CASTG	3 cut(s)	106, 504, 802
Van91I	CCANNNNNTGG	1 cut(s)	828
VpaK11BI	GGWCC	2 cut(s)	58, 313
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	749
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.