Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015436

Physical Location & Seq

Genomic Coordinates Forward (+)

18746926 .. 18748380

Gene Structure 1455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG099500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAACGACCTGATGACGAAATCGTTCACCAACTATGTGGATCTAAAGAAAGAGGCAATGAAAGACATGGACCTTGAAGCTGGGAATTTGGAGCTGTCAACAAACATGAACAGTGACCTGGGTCTGTTCCTGGAAGAGGCAGAAAAGGTGAAGCAGGAGATGGCTTGTGTGCGTGATATTCTGGGCCGATTACAGCAAGCCAACGAGGAGAGCAAGTCCCTCCACAAATCGGAGGCGTTGCAATCGTTGCGAAGCCGCATCAATGCCGACATTGTGAGTGTTCTGAAGCAGGCCAGGACGATTCGATGTCATCTGGAAGACATGGACCGTGCCAATGCCGCCAATAAGAGGCTCTCGGCTGCGAAAGAAGGCACCCCGATTTACAGGACGAGGATGGCGGTCACCAACGGGCTGCGCAAGAAGCTGAAGGAGCTTATGATGGAGTTTCAGGGTCTGAGGCAGAGGATGATGAGCGAGTACAAGGAGACTGTGGGGAGGAGGTATTTCACAGTGACAGGAGAGAAGGCGGATGAGGAGGTGATCGAAAAGATCATTTCGAATGGTGGGGAGGAGTTCATGGGGAGAGCCATACAGGAACATGGGAGGGGAAAGGTGCTGGAAACTGTGGTTGAGATACAGGACAGGCACGACACGGCAAAGGATATCGAAAAGAGCTTGCTGGAGCTGCATCAGGTGTTCTTGGACATGGCTGTGATGGTGGAGGCTCAAGGTGAGCAGATGGATGACATTGAGCAACATGTGATAAATGCTTCACACTATGTCAAGGCTGGAACCAAACAACTCAACACTGCCAAGGGATACCAGAGGAGCACCAGGAAGTGGATGTGTATCGGAATCATTATTCTCCTCATACTCATTCTTGTAATTGTTATCCCCGTCGCCACCAGCTTCGCCCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0055044 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

307

Amino Acids

34.89

Weight (kDa)

6.48

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	39 - 197	7.8e-49	Syntaxin
SNARE	PF05739	245 - 297	4.6e-19	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08560
fragaria_vesca	FvH4_7g04270
malus_domestica	MD12G1000200.v1.1
prunus_persica	Prupe.7G000700_v2.0.a1
pyrus_communis	pycom12g00030
rosa_chinensis	RchiOBHm_Chr1g0329221
rosa_laevigata	RLG00000029909
rosa_multiflora	Rmu_sc0000203.1_g000003 Rmu_sc0010272.1_g000006
rosa_roxburghii	Rroxscaffold_4G00321310
rosa_rugosa	Rorug01G0077200
rosa_samantha	Rh1AG096200 Rh1BG077000 Rh1CG093000 Rh1DG099500
rosa_wichuraiana	Rw1G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	416
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	840
AciI	CCGC	4 cut(s)	256, 339, 398, 527
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	2 cut(s)	305, 446
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	4 cut(s)	136, 229, 348, 840
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	1 cut(s)	77
AjnI	CCWGG	4 cut(s)	117, 129, 293, 833
AluBI	AGCT	7 cut(s)	80, 94, 424, 433, 675, 685, 909
AluI	AGCT	7 cut(s)	80, 94, 424, 433, 675, 685, 909
Alw21I	GWGCWC	1 cut(s)	833
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	454
AoxI	GGCC	2 cut(s)	184, 291
ApeKI	GCWGC	3 cut(s)	359, 412, 685
ApoI	RAATTY	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	3 cut(s)	70, 184, 325
AsuHPI	GGTGA	5 cut(s)	19, 160, 394, 550, 743
AsuII	TTCGAA	1 cut(s)	557
AvaII	GGWCC	2 cut(s)	70, 325
BanI	GGYRCC	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	833
BbvI	GCAGC	3 cut(s)	346, 399, 672
BccI	CCATC	5 cut(s)	154, 388, 433, 709, 733
BceAI	ACGGC	1 cut(s)	669
BciT130I	CCWGG	4 cut(s)	119, 131, 295, 835
BciVI	GTATCC	1 cut(s)	812
BcoDI	GTCTC	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	812
BisI	GCNGC	5 cut(s)	256, 339, 360, 413, 686
BlsI	GCNGC	5 cut(s)	257, 340, 361, 414, 687
Bme1390I	CCNGG	4 cut(s)	119, 131, 295, 835
Bme18I	GGWCC	2 cut(s)	70, 325
BmgT120I	GGNCC	3 cut(s)	70, 184, 325
BmiI	GGNNCC	2 cut(s)	373, 793
BmrFI	CCNGG	4 cut(s)	119, 131, 295, 835
BmsI	GCATC	2 cut(s)	267, 697
BoxI	GACNNNNGTC	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	701
Bpu14I	TTCGAA	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	711
BsaBI	GATNNNNATC	1 cut(s)	848
BsaJI	CCNNGG	2 cut(s)	118, 813
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 229, 348, 840
Bse3DI	GCAATG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	848
BseBI	CCWGG	4 cut(s)	119, 131, 295, 835
BseDI	CCNNGG	2 cut(s)	118, 813
BseGI	GGATG	5 cut(s)	399, 471, 535, 748, 849
BseJI	GATNNNNATC	1 cut(s)	848
BseLI	CCNNNNNNNGG	4 cut(s)	136, 229, 348, 840
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	446
BseRI	GAGGAG	6 cut(s)	221, 511, 548, 584, 841, 857
BseXI	GCAGC	3 cut(s)	346, 399, 672
BseYI	CCCAGC	1 cut(s)	80
BshFI	GGCC	2 cut(s)	186, 293
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	833
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	4 cut(s)	136, 229, 348, 840
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	186, 293
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	833
Bsp143I	GATC	3 cut(s)	40, 540, 549
BspACI	CCGC	4 cut(s)	256, 339, 398, 527
BspANI	GGCC	2 cut(s)	186, 293
BspCNI	CTCAG	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	373, 793
BspPI	GGATC	1 cut(s)	48
BspT104I	TTCGAA	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	118, 813
BssMI	GATC	3 cut(s)	40, 540, 549
BssT1I	CCWWGG	1 cut(s)	813
Bst2UI	CCWGG	4 cut(s)	119, 131, 295, 835
Bst4CI	ACNGT	5 cut(s)	113, 329, 490, 511, 625
Bst6I	CTCTTC	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	3 cut(s)	198, 291, 677
BstDEI	CTNAG	1 cut(s)	455
BstEII	GGTNACC	1 cut(s)	400
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	5 cut(s)	399, 471, 535, 748, 849
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	3 cut(s)	43, 543, 552
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	3 cut(s)	40, 540, 549
BstMWI	GCNNNNNNNGC	5 cut(s)	247, 338, 421, 430, 685
BstNI	CCWGG	4 cut(s)	119, 131, 295, 835
BstNSI	RCATGY	1 cut(s)	761
BstPAI	GACNNNNGTC	1 cut(s)	120
BstPI	GGTNACC	1 cut(s)	400
BstSCI	CCNGG	4 cut(s)	117, 129, 293, 833
BstV1I	GCAGC	3 cut(s)	346, 399, 672
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	812
BsuRI	GGCC	2 cut(s)	186, 293
BtsCI	GGATG	5 cut(s)	399, 471, 535, 748, 849
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	3 cut(s)	118, 516, 807
Cac8I	GCNNGC	3 cut(s)	198, 291, 677
CaiI	CAGNNNCTG	1 cut(s)	454
CfoI	GCGC	1 cut(s)	417
Cfr13I	GGNCC	3 cut(s)	70, 184, 325
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	7 cut(s)	67, 106, 322, 577, 599, 706, 758
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	3 cut(s)	42, 542, 551
DpnII	GATC	3 cut(s)	40, 540, 549
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	813
Eco32I	GATATC	1 cut(s)	664
Eco47I	GGWCC	2 cut(s)	70, 325
Eco57I	CTGAAG	2 cut(s)	305, 446
Eco91I	GGTNACC	1 cut(s)	400
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoO65I	GGTNACC	1 cut(s)	400
EcoRII	CCWGG	4 cut(s)	117, 129, 293, 833
EcoRV	GATATC	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	813
ErhI	CCWWGG	1 cut(s)	813
FaeI	CATG	7 cut(s)	70, 109, 325, 580, 602, 709, 761
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	7 cut(s)	66, 105, 321, 576, 598, 705, 757
Fnu4HI	GCNGC	5 cut(s)	256, 339, 360, 413, 686
FokI	GGATG	5 cut(s)	406, 478, 542, 755, 856
Fsp4HI	GCNGC	5 cut(s)	256, 339, 360, 413, 686
FspI	TGCGCA	1 cut(s)	416
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	5 cut(s)	256, 339, 360, 413, 686
GsaI	CCCAGC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	701
HaeIII	GGCC	2 cut(s)	186, 293
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	7 cut(s)	70, 109, 325, 580, 602, 709, 761
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	2 cut(s)	301, 855
HphI	GGTGA	5 cut(s)	19, 160, 394, 550, 743
Hpy166II	GTNNAC	2 cut(s)	27, 99
Hpy188I	TCNGA	4 cut(s)	232, 285, 456, 854
Hpy188III	TCNNGA	2 cut(s)	314, 921
Hpy8I	GTNNAC	2 cut(s)	27, 99
Hpy99I	CGWCG	1 cut(s)	902
HpyAV	CCTTC	3 cut(s)	362, 421, 517
HpyCH4III	ACNGT	5 cut(s)	113, 329, 490, 511, 625
HpyCH4V	TGCA	2 cut(s)	241, 688
HpyF10VI	GCNNNNNNNGC	5 cut(s)	247, 338, 421, 430, 685
HpyF3I	CTNAG	1 cut(s)	455
Hsp92II	CATG	7 cut(s)	70, 109, 325, 580, 602, 709, 761
HspAI	GCGC	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	40, 540, 549
LmnI	GCTCC	4 cut(s)	91, 430, 682, 828
Lsp1109I	GCAGC	3 cut(s)	346, 399, 672
LweI	GCATC	2 cut(s)	267, 697
MaeIII	GTNAC	3 cut(s)	113, 400, 511
MalI	GATC	3 cut(s)	42, 542, 551
MboI	GATC	3 cut(s)	40, 540, 549
MboII	GAAGA	2 cut(s)	146, 329
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	833
MluCI	AATT	2 cut(s)	85, 885
MroXI	GAANNNNTTC	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	710
MspR9I	CCNGG	4 cut(s)	119, 131, 295, 835
MvaI	CCWGG	4 cut(s)	119, 131, 295, 835
MwoI	GCNNNNNNNGC	5 cut(s)	247, 338, 421, 430, 685
NdeII	GATC	3 cut(s)	40, 540, 549
NlaIII	CATG	7 cut(s)	70, 109, 325, 580, 602, 709, 761
NlaIV	GGNNCC	2 cut(s)	373, 793
NmeAIII	GCCGAG	1 cut(s)	335
NmuCI	GTSAC	3 cut(s)	113, 400, 511
NsbI	TGCGCA	1 cut(s)	416
NspI	RCATGY	1 cut(s)	761
NspV	TTCGAA	1 cut(s)	557
PciI	ACATGT	1 cut(s)	757
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	301, 855
PflMI	CCANNNNNTGG	1 cut(s)	840
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	5 cut(s)	257, 340, 361, 414, 687
PscI	ACATGT	1 cut(s)	757
PshAI	GACNNNNGTC	1 cut(s)	120
Psp6I	CCWGG	4 cut(s)	117, 129, 293, 833
PspEI	GGTNACC	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	80
PspGI	CCWGG	4 cut(s)	117, 129, 293, 833
PspN4I	GGNNCC	2 cut(s)	373, 793
PspPI	GGNCC	3 cut(s)	70, 184, 325
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	710
SatI	GCNGC	5 cut(s)	256, 339, 360, 413, 686
Sau3AI	GATC	3 cut(s)	40, 540, 549
Sau96I	GGNCC	3 cut(s)	70, 184, 325
ScrFI	CCNGG	4 cut(s)	119, 131, 295, 835
SduI	GDGCHC	1 cut(s)	833
SfaNI	GCATC	2 cut(s)	267, 697
SfuI	TTCGAA	1 cut(s)	557
SinI	GGWCC	2 cut(s)	70, 325
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	726
SmoI	CTYRAG	1 cut(s)	726
Sse9I	AATT	2 cut(s)	85, 885
SsiI	CCGC	4 cut(s)	256, 339, 398, 527
StyD4I	CCNGG	4 cut(s)	117, 129, 293, 833
StyI	CCWWGG	1 cut(s)	813
TaaI	ACNGT	5 cut(s)	113, 329, 490, 511, 625
TaqI	TCGA	4 cut(s)	304, 543, 557, 666
TasI	AATT	2 cut(s)	85, 885
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	2 cut(s)	258, 341
TfiI	GAWTC	2 cut(s)	301, 855
TscAI	CASTG	3 cut(s)	118, 516, 814
TseFI	GTSAC	3 cut(s)	113, 400, 511
TseI	GCWGC	3 cut(s)	359, 412, 685
Tsp45I	GTSAC	3 cut(s)	113, 400, 511
TspDTI	ATGAA	4 cut(s)	17, 74, 122, 565
TspRI	CASTG	3 cut(s)	118, 516, 814
Van91I	CCANNNNNTGG	1 cut(s)	840
VpaK11BI	GGWCC	2 cut(s)	70, 325
XagI	CCTNNNNNAGG	1 cut(s)	134
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	1 cut(s)	761
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.