AT1G08780

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015230
Physical Location & Seq
Reverse (-)
2809778 .. 2811313
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08780.1

Sequence Viewer

Length: 390 bp
ATGCAGCAGCAAGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAACATTAATATCTTCAGCCGTCTCAACAACAGAGTCCATGACCTCGATGACGATATCAAATCCGCCAAGGAAAAGTGTGAAAATCTAGAGGATGCAGGGAACGAGTTGATCCTTGCTGATGAGGAGATGGTGCGTTTTCAAATAGGAGAAGTGTTTGCTCATGTGCCGAGGGACGACGTAGAAACAAAGATAGAAGAGATGAAAGAAGCGACCTGCAAAAGCCTTGAGAAACTCGAGCAAGAGAAGGAATCAATTGTAACACAAATGGCAGCGCTGAAGAAGGTATTGTATGCTAAGTTCAAAGATTCTATCAATCTTGAAGAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0008150 GO:0009987 GO:0016272 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0051087
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

129

Amino Acids

14.88

Weight (kDa)

4.55

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 19 - 122 1.6e-24 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015230)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08780
fragaria_vesca FvH4_6g02700
malus_domestica MD04G1225700.v1.1 MD12G1242900.v1.1
prunus_persica Prupe.6G344500_v2.0.a1
pyrus_communis pycom12g22190
rosa_chinensis RchiOBHm_Chr3g0450701
rosa_laevigata RLG00000025709
rosa_multiflora Rmu_sc0000078.1_g000033
rosa_roxburghii Rroxscaffold_6G00428360
rosa_rugosa Rorug02G0629800
rosa_samantha Rh3AG030600 Rh3BG031100 Rh3CG029900 Rh3DG030700
rosa_wichuraiana Rw3G002360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 281
AciI CCGC 1 cut(s) 123
AclWI GGATC 2 cut(s) 34, 163
AcuI CTGAAG 2 cut(s) 58, 356
AfeI AGCGCT 1 cut(s) 333
AgsI TTSAA 3 cut(s) 200, 361, 380
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 34, 163
Ama87I CYCGRG 1 cut(s) 293
Aor51HI AGCGCT 1 cut(s) 333
ApeKI GCWGC 3 cut(s) 4, 7, 329
AseI ATTAAT 1 cut(s) 66
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 52
BbvI GCAGC 3 cut(s) 16, 19, 341
BccI CCATC 2 cut(s) 28, 181
BceAI ACGGC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 2 cut(s) 146, 388
BfoI RGCGCY 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 281
BisI GCNGC 3 cut(s) 5, 8, 330
BlsI GCNGC 3 cut(s) 6, 9, 331
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 52
BmsI GCATC 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 305
BsaJI CCNNGG 2 cut(s) 126, 227
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
BseDI CCNNGG 2 cut(s) 126, 227
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 3 cut(s) 16, 19, 341
BsiHKCI CYCGRG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 293
Bsp143I GATC 2 cut(s) 26, 168
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 281
BspPI GGATC 2 cut(s) 34, 163
BssECI CCNNGG 2 cut(s) 126, 227
BssMI GATC 2 cut(s) 26, 168
BssT1I CCWWGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 30, 354
BstF5I GGATG 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 2 cut(s) 29, 171
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 26, 168
BstV1I GCAGC 3 cut(s) 16, 19, 341
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BtsCI GGATG 1 cut(s) 157
BveI ACCTGC 1 cut(s) 281
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 3 cut(s) 45, 98, 221
CviJI RGCY 2 cut(s) 78, 282
CviKI_1 RGCY 2 cut(s) 78, 282
DdeI CTNAG 2 cut(s) 30, 354
DpnI GATC 2 cut(s) 28, 170
DpnII GATC 2 cut(s) 26, 168
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
EciI GGCGGA 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 126
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 52
Eco47III AGCGCT 1 cut(s) 333
Eco57I CTGAAG 2 cut(s) 58, 356
Eco88I CYCGRG 1 cut(s) 293
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 3 cut(s) 48, 101, 224
FaiI YATR 4 cut(s) 46, 99, 222, 351
FaqI GGGAC 1 cut(s) 245
FatI CATG 3 cut(s) 44, 97, 220
Fnu4HI GCNGC 3 cut(s) 5, 8, 330
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 5, 8, 330
FspBI CTAG 2 cut(s) 146, 388
GlaI GCGC 1 cut(s) 333
GluI GCNGC 3 cut(s) 5, 8, 330
HaeII RGCGCY 1 cut(s) 335
HhaI GCGC 1 cut(s) 334
Hin1II CATG 3 cut(s) 48, 101, 224
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 3 cut(s) 93, 308, 365
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 146, 377
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 298, 334
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 4, 155, 276
HpyF3I CTNAG 2 cut(s) 30, 354
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 3 cut(s) 48, 101, 224
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 2 cut(s) 26, 168
LpnPI CCDG 3 cut(s) 68, 141, 286
Lsp1109I GCAGC 3 cut(s) 16, 19, 341
LweI GCATC 1 cut(s) 142
MaeI CTAG 2 cut(s) 146, 388
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 2 cut(s) 40, 316
MalI GATC 2 cut(s) 28, 170
MboI GATC 2 cut(s) 26, 168
MboII GAAGA 3 cut(s) 64, 266, 349
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 1 cut(s) 26
MluCI AATT 1 cut(s) 312
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 6 cut(s) 31, 43, 113, 142, 175, 222
MseI TTAA 1 cut(s) 66
MunI CAATTG 1 cut(s) 312
NdeII GATC 2 cut(s) 26, 168
NlaIII CATG 3 cut(s) 48, 101, 224
NmeAIII GCCGAG 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 293
PfeI GAWTC 2 cut(s) 308, 365
PkrI GCNGC 3 cut(s) 6, 9, 331
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 66
PspPI GGNCC 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 293
PsrI GAACNNNNNNTAC 2 cut(s) 341, 373
PsuI RGATCY 1 cut(s) 26
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 3 cut(s) 5, 8, 330
Sau3AI GATC 2 cut(s) 26, 168
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 102
SetI ASST 5 cut(s) 42, 105, 240, 275, 345
SfaNI GCATC 1 cut(s) 142
Sfr274I CTCGAG 1 cut(s) 293
SinI GGWCC 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 2 cut(s) 284, 293
SmoI CTYRAG 2 cut(s) 284, 293
Sse9I AATT 1 cut(s) 312
SsiI CCGC 1 cut(s) 123
SspMI CTAG 2 cut(s) 146, 388
StyI CCWWGG 1 cut(s) 126
TaiI ACGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 105, 294
TasI AATT 1 cut(s) 312
TfiI GAWTC 2 cut(s) 308, 365
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 3 cut(s) 4, 7, 329
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 52
VspI ATTAAT 1 cut(s) 66
XbaI TCTAGA 1 cut(s) 145
XhoI CTCGAG 1 cut(s) 293
XspI CTAG 2 cut(s) 146, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.