FvH4_6g02700

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015230
Physical Location & Seq
Reverse (-)
1540410 .. 1542170
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02700.t1

Sequence Viewer

Length: 381 bp
ATGCAACAGGGTGGAGGATCTGAAACAGAGGTGACATGGGAGGACCAGCAGAACATCAACAAGTTTGGGAGATTGAACAACCGGTTCCACGAGCTAGAGGACGAGATCAAAGTTGCAAAGGAATCAAATGATAACTTGGAGGATGCAGGGAATGAATTGATTCTCACAGATGAGGATGTGGTGAGATTCCAGATTGGTGAAGTCTTTGCCCATGTTCCAAAAGAAGAAGTGGAGAACAGGATAGAAGAAATGAAAGAGGTAACTAGCAAAAGTTTGGAGAAACTCTACGAAGAGAAGGAATCTGTTCTTGCACAGATGACCGAATTGAAGCAAATTTTGTACGGGAAGTTCAAGGACTCCATCAATCTAGAGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0008150 GO:0009987 GO:0016272 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0051087
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

127

Amino Acids

14.65

Weight (kDa)

4.44

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 16 - 119 3e-22 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015230)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08780
fragaria_vesca FvH4_6g02700
malus_domestica MD04G1225700.v1.1 MD12G1242900.v1.1
prunus_persica Prupe.6G344500_v2.0.a1
pyrus_communis pycom12g22190
rosa_chinensis RchiOBHm_Chr3g0450701
rosa_laevigata RLG00000025709
rosa_multiflora Rmu_sc0000078.1_g000033
rosa_roxburghii Rroxscaffold_6G00428360
rosa_rugosa Rorug02G0629800
rosa_samantha Rh3AG030600 Rh3BG031100 Rh3CG029900 Rh3DG030700
rosa_wichuraiana Rw3G002360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 25
AcsI RAATTY 1 cut(s) 333
AfaI GTAC 1 cut(s) 341
AgeI ACCGGT 1 cut(s) 81
AgsI TTSAA 3 cut(s) 76, 328, 352
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
AlwI GGATC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 333
AsiGI ACCGGT 1 cut(s) 81
Asp700I GAANNNNTTC 2 cut(s) 159, 303
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 3 cut(s) 43, 193, 209
AvaII GGWCC 1 cut(s) 43
BauI CACGAG 1 cut(s) 89
BccI CCATC 1 cut(s) 368
BfaI CTAG 3 cut(s) 95, 264, 368
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 86
BmsI GCATC 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 81
Bse118I RCCGGY 1 cut(s) 81
BseGI GGATG 2 cut(s) 148, 181
BshTI ACCGGT 1 cut(s) 81
BsiSI CCGG 1 cut(s) 82
Bsp143I GATC 2 cut(s) 17, 105
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 81
BssMI GATC 2 cut(s) 17, 105
BssSI CACGAG 1 cut(s) 89
Bst2BI CACGAG 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 285
BstF5I GGATG 2 cut(s) 148, 181
BstKTI GATC 2 cut(s) 20, 108
BstMBI GATC 2 cut(s) 17, 105
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BtsCI GGATG 2 cut(s) 148, 181
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 340
CspAI ACCGGT 1 cut(s) 81
CviAII CATG 2 cut(s) 36, 212
CviJI RGCY 1 cut(s) 94
CviKI_1 RGCY 1 cut(s) 94
CviQI GTAC 1 cut(s) 340
DpnI GATC 2 cut(s) 19, 107
DpnII GATC 2 cut(s) 17, 105
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 43
FaeI CATG 2 cut(s) 39, 215
FaiI YATR 2 cut(s) 37, 213
FatI CATG 2 cut(s) 35, 211
FokI GGATG 2 cut(s) 155, 188
FspBI CTAG 3 cut(s) 95, 264, 368
HapII CCGG 1 cut(s) 82
Hin1II CATG 2 cut(s) 39, 215
HinfI GANTC 5 cut(s) 122, 160, 186, 299, 356
HpaII CCGG 1 cut(s) 82
HphI GGTGA 3 cut(s) 43, 193, 209
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 190, 368
HpyAV CCTTC 1 cut(s) 289
HpyCH4V TGCA 4 cut(s) 4, 116, 146, 311
Hsp92II CATG 2 cut(s) 39, 215
Kzo9I GATC 2 cut(s) 17, 105
LpnPI CCDG 5 cut(s) 59, 95, 132, 203, 223
LweI GCATC 1 cut(s) 133
MaeI CTAG 3 cut(s) 95, 264, 368
MaeIII GTNAC 2 cut(s) 31, 259
MalI GATC 2 cut(s) 19, 107
MboI GATC 2 cut(s) 17, 105
MboII GAAGA 3 cut(s) 236, 257, 302
MflI RGATCY 1 cut(s) 17
MluCI AATT 3 cut(s) 155, 323, 333
MlyI GAGTC 1 cut(s) 350
MnlI CCTC 8 cut(s) 8, 22, 34, 91, 133, 166, 250, 364
MroXI GAANNNNTTC 2 cut(s) 159, 303
MspI CCGG 1 cut(s) 82
NdeII GATC 2 cut(s) 17, 105
NlaIII CATG 2 cut(s) 39, 215
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 31
PdmI GAANNNNTTC 2 cut(s) 159, 303
PfeI GAWTC 4 cut(s) 122, 160, 186, 299
PinAI ACCGGT 1 cut(s) 81
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 43
PsrI GAACNNNNNNTAC 2 cut(s) 332, 364
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
Sau3AI GATC 2 cut(s) 17, 105
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 350
SetI ASST 3 cut(s) 33, 96, 261
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 1 cut(s) 43
Sse9I AATT 3 cut(s) 155, 323, 333
SspMI CTAG 3 cut(s) 95, 264, 368
TaqII GACCGA 1 cut(s) 335
TasI AATT 3 cut(s) 155, 323, 333
TfiI GAWTC 4 cut(s) 122, 160, 186, 299
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 168, 266
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 1 cut(s) 333
XbaI TCTAGA 1 cut(s) 367
XmnI GAANNNNTTC 2 cut(s) 159, 303
XspI CTAG 3 cut(s) 95, 264, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.