Rorug02G0629800

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
74439623 .. 74444964
5342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0629800.1

Sequence Viewer

Length: 660 bp
ATGGGCAAGGGAAAGAAAAAAGAGAACAAGGATGCCCAGCTTCAACACCTATTATCTACCCATCGCCATGTGTTTGTGCTTGATGTTGAAGGTCAGCCCGAACGAAATCGATCCCATCTTTGTCAGAGGATTTCGGCATTCGGAGGTGCCCTCTTCATCGGCAAGAATAGTCACATGAAGAGAATAATTACTAATCGTACAACTTCATCTTTAGTGGATCTCGTCACATATATCTATGGTGAAACTGCTTTGCTGTGTTTTTCTGAAGCGTGGGAGACGATTTATGCAATGTTAATGAGTGAGTTTGATCTTCCACCACGTGCTGCTTTTTTGGAAGGCTCGTATGGGCTTTTAACTGGAATTGAACTGCAGGAATATTGGGGCTTTCGTACGAATATACCAAGTGATCTTCTTTTGCATCATGAGGGTGATACTGGTTCTCATGTGTCTGGGGCGGCGTCTGATTTGTCCACTAGGCATGATGAATTTGTGTCCAACACGGGGGAATTGAATGTTGTTCCGCCTGAAGATTTGTCCACTACTTTTGAATTTATCCCTGCTGGCGAAGACACTAATGTTTGGGCTGAATTTGTGCTGGATGGGGCCGAGAGTGATGTTTTTGTTCATGAGATTTGGCTCGATGATGAGCCCACTGCCTGA
Functional Annotation

Protein Analysis

219

Amino Acids

24.47

Weight (kDa)

4.78

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AciI CCGC 2 cut(s) 455, 521
AclWI GGATC 2 cut(s) 105, 225
AcsI RAATTY 3 cut(s) 485, 548, 587
AcuI CTGAAG 2 cut(s) 285, 546
AcvI CACGTG 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 458
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 2 cut(s) 199, 391
AfiI CCNNNNNNNGG 1 cut(s) 501
AgsI TTSAA 5 cut(s) 44, 89, 365, 511, 548
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 2 cut(s) 105, 225
AoxI GGCC 1 cut(s) 603
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 3 cut(s) 485, 548, 587
AspS9I GGNCC 1 cut(s) 603
AsuHPI GGTGA 2 cut(s) 251, 440
BaeGI GKGCMC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 651
BbrPI CACGTG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 573
BbvI GCAGC 1 cut(s) 310
BccI CCATC 3 cut(s) 69, 123, 593
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 368
BisI GCNGC 2 cut(s) 324, 456
BlsI GCNGC 2 cut(s) 325, 457
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 2 cut(s) 148, 604
BmsI GCATC 2 cut(s) 22, 427
BpiI GAAGAC 1 cut(s) 573
BplI GAGNNNNNCTC 2 cut(s) 135, 167
Bsa29I ATCGAT 1 cut(s) 109
BsaAI YACGTR 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 458
Bsc4I CCNNNNNNNGG 1 cut(s) 501
Bse1I ACTGG 2 cut(s) 361, 439
Bse3DI GCAATG 1 cut(s) 294
BseCI ATCGAT 1 cut(s) 109
BseGI GGATG 2 cut(s) 37, 604
BseLI CCNNNNNNNGG 1 cut(s) 501
BseMI GCAATG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 361, 439
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 1 cut(s) 310
BseYI CCCAGC 1 cut(s) 36
BshFI GGCC 1 cut(s) 605
BshNI GGYRCC 1 cut(s) 146
BshVI ATCGAT 1 cut(s) 109
BsiWI CGTACG 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 501
BsmAI GTCTC 1 cut(s) 269
BsmBI CGTCTC 1 cut(s) 269
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 1 cut(s) 605
Bsp1286I GDGCHC 2 cut(s) 151, 651
Bsp143I GATC 4 cut(s) 110, 217, 307, 406
BspACI CCGC 2 cut(s) 455, 521
BspANI GGCC 1 cut(s) 605
BspDI ATCGAT 1 cut(s) 109
BspHI TCATGA 2 cut(s) 421, 625
BspLI GGNNCC 2 cut(s) 148, 604
BspMAI CTGCAG 1 cut(s) 372
BspPI GGATC 2 cut(s) 105, 225
BspT107I GGYRCC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 2 cut(s) 361, 439
BssMI GATC 4 cut(s) 110, 217, 307, 406
BssNI GRCGYC 1 cut(s) 458
Bst6I CTCTTC 2 cut(s) 158, 173
BstACI GRCGYC 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 562
BstF5I GGATG 2 cut(s) 37, 604
BstKTI GATC 4 cut(s) 113, 220, 310, 409
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 4 cut(s) 110, 217, 307, 406
BstSFI CTRYAG 1 cut(s) 368
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 573
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 109
BsuRI GGCC 1 cut(s) 605
BsuTUI ATCGAT 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 37, 604
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 1 cut(s) 562
CciI TCATGA 2 cut(s) 421, 625
Cfr13I GGNCC 1 cut(s) 603
ClaI ATCGAT 1 cut(s) 109
CseI GACGC 1 cut(s) 447
Csp6I GTAC 2 cut(s) 198, 390
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 6 cut(s) 68, 175, 422, 443, 479, 626
CviJI RGCY 9 cut(s) 40, 97, 339, 349, 384, 584, 605, 637, 649
CviKI_1 RGCY 9 cut(s) 40, 97, 339, 349, 384, 584, 605, 637, 649
CviQI GTAC 2 cut(s) 198, 390
DpnI GATC 4 cut(s) 112, 219, 309, 408
DpnII GATC 4 cut(s) 110, 217, 307, 406
DraIII CACNNNGTG 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 158, 173
EarI CTCTTC 2 cut(s) 158, 173
EciI GGCGGA 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 651
Eco57I CTGAAG 2 cut(s) 285, 546
Eco72I CACGTG 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 651
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 6 cut(s) 71, 178, 425, 446, 482, 629
FatI CATG 6 cut(s) 67, 174, 421, 442, 478, 625
Fnu4HI GCNGC 2 cut(s) 324, 456
FokI GGATG 2 cut(s) 44, 611
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 2 cut(s) 324, 456
FspBI CTAG 1 cut(s) 474
GluI GCNGC 2 cut(s) 324, 456
GsaI CCCAGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 605
HgaI GACGC 1 cut(s) 447
Hin1I GRCGYC 1 cut(s) 458
Hin1II CATG 6 cut(s) 71, 178, 425, 446, 482, 629
HphI GGTGA 2 cut(s) 251, 440
Hpy166II GTNNAC 2 cut(s) 471, 537
Hpy188I TCNGA 4 cut(s) 126, 143, 265, 463
Hpy188III TCNNGA 2 cut(s) 422, 626
Hpy8I GTNNAC 2 cut(s) 471, 537
HpyAV CCTTC 2 cut(s) 83, 329
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 287, 370, 418
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 1 cut(s) 458
Hsp92II CATG 6 cut(s) 71, 178, 425, 446, 482, 629
Kzo9I GATC 4 cut(s) 110, 217, 307, 406
LpnPI CCDG 9 cut(s) 50, 342, 356, 420, 435, 537, 546, 570, 581
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 2 cut(s) 22, 427
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 2 cut(s) 170, 223
MalI GATC 4 cut(s) 112, 219, 309, 408
MboI GATC 4 cut(s) 110, 217, 307, 406
MboII GAAGA 6 cut(s) 145, 190, 302, 401, 539, 578
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 151, 651
MluCI AATT 6 cut(s) 186, 360, 485, 506, 548, 587
MmeI TCCRAC 1 cut(s) 519
MnlI CCTC 4 cut(s) 120, 137, 161, 418
MseI TTAA 2 cut(s) 293, 353
MslI CAYNNNNRTG 2 cut(s) 66, 426
Mva1269I GAATGC 1 cut(s) 137
NdeII GATC 4 cut(s) 110, 217, 307, 406
NlaIII CATG 6 cut(s) 71, 178, 425, 446, 482, 629
NlaIV GGNNCC 2 cut(s) 148, 604
NmeAIII GCCGAG 1 cut(s) 631
NmuCI GTSAC 2 cut(s) 170, 223
PagI TCATGA 2 cut(s) 421, 625
PctI GAATGC 1 cut(s) 137
Pfl23II CGTACG 1 cut(s) 389
PkrI GCNGC 2 cut(s) 325, 457
PmaCI CACGTG 1 cut(s) 320
PmlI CACGTG 1 cut(s) 320
Ppu21I YACGTR 1 cut(s) 320
PspCI CACGTG 1 cut(s) 320
PspFI CCCAGC 1 cut(s) 36
PspLI CGTACG 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 148, 604
PspPI GGNCC 1 cut(s) 603
PstI CTGCAG 1 cut(s) 372
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 2 cut(s) 199, 391
RsaNI GTAC 2 cut(s) 198, 390
RseI CAYNNNNRTG 2 cut(s) 66, 426
SaqAI TTAA 2 cut(s) 293, 353
SatI GCNGC 2 cut(s) 324, 456
Sau3AI GATC 4 cut(s) 110, 217, 307, 406
Sau96I GGNCC 1 cut(s) 603
SduI GDGCHC 2 cut(s) 151, 651
SetI ASST 5 cut(s) 42, 51, 94, 148, 322
SfaNI GCATC 2 cut(s) 22, 427
SfcI CTRYAG 1 cut(s) 368
SmiMI CAYNNNNRTG 2 cut(s) 66, 426
Sse9I AATT 6 cut(s) 186, 360, 485, 506, 548, 587
SsiI CCGC 2 cut(s) 455, 521
SspI AATATT 1 cut(s) 377
SspMI CTAG 1 cut(s) 474
TaiI ACGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 109, 639
TasI AATT 6 cut(s) 186, 360, 485, 506, 548, 587
TauI GCSGC 1 cut(s) 458
Tru1I TTAA 2 cut(s) 293, 353
Tru9I TTAA 2 cut(s) 293, 353
TscAI CASTG 1 cut(s) 658
TseFI GTSAC 2 cut(s) 170, 223
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 2 cut(s) 170, 223
TspDTI ATGAA 5 cut(s) 145, 191, 195, 498, 614
TspRI CASTG 1 cut(s) 658
XapI RAATTY 3 cut(s) 485, 548, 587
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.