FvH4_6g02620

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000230
Physical Location & Seq
Forward (+)
1511388 .. 1512491
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02620.t1

Sequence Viewer

Length: 1104 bp
ATGGAATTTGATCCCAACGACAACGAAGTTGTTATGAAGTTCTCAATGGGAACTCCACCCATCGATATTCATGCAATTGTTGATACTGGTAGCGATCTAGTATGGACGCAGTGTGAGCCGTGTCATGTTTGTCACAAGTCCAAGTTTGGTGTTTTTGACCCAAGAAAGTCATCAACTCATAAGAACATTACTTGTCGGTCAAAGGATTGTAGACTACTTGGCGACTCCTATCCCCGACGTGAAATGGAATTGTGTAGAAAAGCACCTACTACAAATTGTGTGTACACGTACGATTACGAAGACGAGTCATACACAGTAGGTCATTTGGGTAGAGAAACAATTTCGTTGAAATCCACTACAGGCAACGTTGTAACCCTAAAAGATATTATCTTTGGGTGTGGGATTACGAACAATATAACTGGTTCCAGTGAAAATGATATGGGACTTGTAGGGCTTGGGCGTGGGCCCTTATCATTTGTTTCTCAAGTTGCTCCTTATGTTGGAGGCAAAAAATTCTCTCATTGTTTTGTGGACAATCCCAATTTGGAAAGCAAGATCTATTTTGGGAATTGGAGTGAAGTTTTGGGTGAAGGGGTGGTGACAGTACCTTTGGTAGATGATCCGACTGCATATTATGTGACAGCATCAGGAATTAGCATCGGAAACGATTTTGTTCCATTCAACTCAAACGGTACATTGCTGAAAAAAGATAACATGATGATCGACTCAGGTACACCTTTCCCGAAGGTACCCCAAGATCTTTTTAACCGGATGGTAACTAAGCTACAAAAAGCAGTTCCTCTGAAGTCAATCATAAAAAAAATCAAAGTGATTGATGCCCTTTGCTTTGCTACCACGACGCCTCCAACATTGCCAAAAATGGCTATACATTTTGAGGGTGGTGGCGAACTACCATTGAGCAATAAGACATTAACATTTCCCGTAGATGATGAGACGTATTGTCTTACAATCGTGAGCGGCACTGATGACTATAGCTTTTTCGGGGGTATACTTCAGACAAATTTATTACTTGGTTTTGATTTGGACAAAAACACGGTATCCTTCAAGCCAACTGATTGCATAGAATACAACAAAAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

368

Amino Acids

40.45

Weight (kDa)

5.43

Isoelectric Point (pI)

27.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 11 - 190 1.8e-48 Xylanase inhibitor N-terminal
Asp PF00026 99 - 355 3.4e-07 Eukaryotic aspartyl protease
TAXi_C PF14541 210 - 356 2.2e-22 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 748
AccB1I GGYRCC 1 cut(s) 748
AccBSI CCGCTC 1 cut(s) 978
AccI GTMKAC 2 cut(s) 211, 1009
AciI CCGC 1 cut(s) 978
AclI AACGTT 1 cut(s) 366
AclWI GGATC 2 cut(s) 5, 614
AcsI RAATTY 3 cut(s) 5, 512, 1021
AcuI CTGAAG 2 cut(s) 824, 998
AcyI GRCGYC 1 cut(s) 860
AfaI GTAC 6 cut(s) 284, 290, 606, 694, 733, 750
AfiI CCNNNNNNNGG 1 cut(s) 500
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 3 cut(s) 349, 682, 1066
AhdI GACNNNNNGTC 1 cut(s) 960
AjiI CACGTC 1 cut(s) 239
AluBI AGCT 2 cut(s) 784, 996
AluI AGCT 2 cut(s) 784, 996
Alw26I GTCTC 1 cut(s) 947
AlwI GGATC 2 cut(s) 5, 614
AoxI GGCC 1 cut(s) 464
ApaI GGGCCC 1 cut(s) 468
ApoI RAATTY 3 cut(s) 5, 512, 1021
ArsI GACNNNNNNTTYG 2 cut(s) 592, 624
Asp718I GGTACC 1 cut(s) 748
AspS9I GGNCC 2 cut(s) 464, 465
AsuHPI GGTGA 2 cut(s) 599, 610
BaeGI GKGCMC 1 cut(s) 468
BanI GGYRCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 468
BbsI GAAGAC 1 cut(s) 306
BccI CCATC 2 cut(s) 68, 766
BceAI ACGGC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciVI GTATCC 1 cut(s) 1069
BcoDI GTCTC 1 cut(s) 947
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 2 cut(s) 357, 991
BfuI GTATCC 1 cut(s) 1069
BglII AGATCT 2 cut(s) 555, 757
BisI GCNGC 1 cut(s) 979
BlsI GCNGC 1 cut(s) 980
BmeRI GACNNNNNGTC 1 cut(s) 960
BmgBI CACGTC 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 464, 465
BmiI GGNNCC 3 cut(s) 424, 466, 750
BmsI GCATC 3 cut(s) 653, 666, 826
BpiI GAAGAC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 468
Bsa29I ATCGAT 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 860
BsaWI WCCGGW 1 cut(s) 768
BsaXI ACNNNNNCTCC 2 cut(s) 847, 877
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse1I ACTGG 3 cut(s) 91, 424, 426
Bse3DI GCAATG 2 cut(s) 695, 869
BseCI ATCGAT 1 cut(s) 63
BseGI GGATG 1 cut(s) 777
BseLI CCNNNNNNNGG 1 cut(s) 500
BseMI GCAATG 2 cut(s) 695, 869
BseMII CTCAG 1 cut(s) 741
BseNI ACTGG 3 cut(s) 91, 424, 426
BseSI GKGCMC 1 cut(s) 468
BshFI GGCC 1 cut(s) 466
BshNI GGYRCC 1 cut(s) 748
BshVI ATCGAT 1 cut(s) 63
BsiSI CCGG 1 cut(s) 769
BsiWI CGTACG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 500
BsmAI GTCTC 1 cut(s) 947
BsmBI CGTCTC 1 cut(s) 947
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 1 cut(s) 466
Bsp120I GGGCCC 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 468
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 6 cut(s) 10, 94, 555, 619, 720, 757
BspACI CCGC 1 cut(s) 978
BspANI GGCC 1 cut(s) 466
BspCNI CTCAG 1 cut(s) 740
BspDI ATCGAT 1 cut(s) 63
BspLI GGNNCC 3 cut(s) 424, 466, 750
BspPI GGATC 2 cut(s) 5, 614
BspT107I GGYRCC 1 cut(s) 748
BsrBI CCGCTC 1 cut(s) 978
BsrDI GCAATG 2 cut(s) 695, 869
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 3 cut(s) 91, 424, 426
BssMI GATC 6 cut(s) 10, 94, 555, 619, 720, 757
BssNAI GTATAC 1 cut(s) 1010
BssNI GRCGYC 1 cut(s) 860
Bst1107I GTATAC 1 cut(s) 1010
Bst4CI ACNGT 4 cut(s) 316, 604, 692, 1057
BstACI GRCGYC 1 cut(s) 860
BstAUI TGTACA 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 727, 780
BstF5I GGATG 1 cut(s) 777
BstKTI GATC 6 cut(s) 13, 97, 558, 622, 723, 760
BstMAI GTCTC 1 cut(s) 947
BstMBI GATC 6 cut(s) 10, 94, 555, 619, 720, 757
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstSFI CTRYAG 2 cut(s) 357, 991
BstSLI GKGCMC 1 cut(s) 468
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 2 cut(s) 555, 757
BstYI RGATCY 2 cut(s) 555, 757
BstZ17I GTATAC 1 cut(s) 1010
Bsu15I ATCGAT 1 cut(s) 63
BsuI GTATCC 1 cut(s) 1069
BsuRI GGCC 1 cut(s) 466
BsuTUI ATCGAT 1 cut(s) 63
BtrI CACGTC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 777
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 3 cut(s) 116, 433, 981
Cfr13I GGNCC 2 cut(s) 464, 465
ClaI ATCGAT 1 cut(s) 63
CseI GACGC 2 cut(s) 115, 868
Csp6I GTAC 6 cut(s) 283, 289, 605, 693, 732, 749
CviAII CATG 3 cut(s) 71, 125, 715
CviJI RGCY 7 cut(s) 118, 454, 466, 784, 884, 996, 1069
CviKI_1 RGCY 7 cut(s) 118, 454, 466, 784, 884, 996, 1069
CviQI GTAC 6 cut(s) 283, 289, 605, 693, 732, 749
DdeI CTNAG 2 cut(s) 727, 780
DpnI GATC 6 cut(s) 12, 96, 557, 621, 722, 759
DpnII GATC 6 cut(s) 10, 94, 555, 619, 720, 757
DriI GACNNNNNGTC 1 cut(s) 960
Eam1105I GACNNNNNGTC 1 cut(s) 960
Eco24I GRGCYC 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 824, 998
EcoO109I RGGNCCY 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 468
Esp3I CGTCTC 1 cut(s) 947
FaeI CATG 3 cut(s) 74, 128, 718
FaqI GGGAC 1 cut(s) 456
FatI CATG 3 cut(s) 70, 124, 714
FblI GTMKAC 2 cut(s) 211, 1009
Fnu4HI GCNGC 1 cut(s) 979
FokI GGATG 1 cut(s) 784
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 1 cut(s) 979
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 979
HaeIII GGCC 1 cut(s) 466
HapII CCGG 1 cut(s) 769
HgaI GACGC 2 cut(s) 115, 868
Hin1I GRCGYC 1 cut(s) 860
Hin1II CATG 3 cut(s) 74, 128, 718
HinfI GANTC 3 cut(s) 224, 305, 725
HpaII CCGG 1 cut(s) 769
HphI GGTGA 2 cut(s) 599, 610
Hpy166II GTNNAC 6 cut(s) 212, 283, 285, 532, 734, 1010
Hpy188I TCNGA 4 cut(s) 624, 662, 804, 1017
Hpy188III TCNNGA 3 cut(s) 648, 742, 973
Hpy8I GTNNAC 6 cut(s) 212, 283, 285, 532, 734, 1010
Hpy99I CGWCG 2 cut(s) 240, 862
HpyAV CCTTC 3 cut(s) 584, 739, 1072
HpyCH4III ACNGT 4 cut(s) 316, 604, 692, 1057
HpyCH4IV ACGT 4 cut(s) 238, 287, 366, 956
HpyCH4V TGCA 3 cut(s) 74, 629, 1080
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 727, 780
HpySE526I ACGT 4 cut(s) 238, 287, 366, 956
Hsp92I GRCGYC 1 cut(s) 860
Hsp92II CATG 3 cut(s) 74, 128, 718
KpnI GGTACC 1 cut(s) 752
Kzo9I GATC 6 cut(s) 10, 94, 555, 619, 720, 757
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 7 cut(s) 72, 345, 405, 439, 633, 714, 782
LweI GCATC 3 cut(s) 653, 666, 826
MaeI CTAG 1 cut(s) 98
MaeII ACGT 4 cut(s) 238, 287, 366, 956
MaeIII GTNAC 5 cut(s) 131, 370, 598, 637, 775
MalI GATC 6 cut(s) 12, 96, 557, 621, 722, 759
MbiI CCGCTC 1 cut(s) 978
MboI GATC 6 cut(s) 10, 94, 555, 619, 720, 757
MboII GAAGA 1 cut(s) 311
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 2 cut(s) 555, 757
MhlI GDGCHC 1 cut(s) 468
MlyI GAGTC 3 cut(s) 218, 314, 719
MmeI TCCRAC 3 cut(s) 481, 647, 890
MnlI CCTC 4 cut(s) 497, 810, 873, 889
MseI TTAA 2 cut(s) 765, 932
MspI CCGG 1 cut(s) 769
MunI CAATTG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 115
NdeII GATC 6 cut(s) 10, 94, 555, 619, 720, 757
NlaIII CATG 3 cut(s) 74, 128, 718
NlaIV GGNNCC 3 cut(s) 424, 466, 750
NmuCI GTSAC 3 cut(s) 131, 598, 637
Pfl23II CGTACG 1 cut(s) 288
PkrI GCNGC 1 cut(s) 980
PleI GAGTC 3 cut(s) 218, 313, 719
PpsI GAGTC 3 cut(s) 218, 313, 719
Ppu21I YACGTR 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 366
PspLI CGTACG 1 cut(s) 288
PspN4I GGNNCC 3 cut(s) 424, 466, 750
PspOMI GGGCCC 1 cut(s) 464
PspPI GGNCC 2 cut(s) 464, 465
PsuI RGATCY 2 cut(s) 555, 757
RsaI GTAC 6 cut(s) 284, 290, 606, 694, 733, 750
RsaNI GTAC 6 cut(s) 283, 289, 605, 693, 732, 749
SaqAI TTAA 2 cut(s) 765, 932
SatI GCNGC 1 cut(s) 979
Sau3AI GATC 6 cut(s) 10, 94, 555, 619, 720, 757
Sau96I GGNCC 2 cut(s) 464, 465
SchI GAGTC 3 cut(s) 218, 314, 719
SduI GDGCHC 1 cut(s) 468
SfaNI GCATC 3 cut(s) 653, 666, 826
SfcI CTRYAG 2 cut(s) 357, 991
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
SsiI CCGC 1 cut(s) 978
SspMI CTAG 1 cut(s) 98
TaaI ACNGT 4 cut(s) 316, 604, 692, 1057
TaiI ACGT 4 cut(s) 241, 290, 369, 959
TaqI TCGA 2 cut(s) 63, 723
TaqII GACCGA 1 cut(s) 186
TatI WGTACW 1 cut(s) 282
TauI GCSGC 1 cut(s) 981
Tru1I TTAA 2 cut(s) 765, 932
Tru9I TTAA 2 cut(s) 765, 932
TscAI CASTG 3 cut(s) 116, 433, 988
TseFI GTSAC 3 cut(s) 131, 598, 637
Tsp45I GTSAC 3 cut(s) 131, 598, 637
TspDTI ATGAA 2 cut(s) 50, 59
TspRI CASTG 3 cut(s) 116, 433, 988
XapI RAATTY 3 cut(s) 5, 512, 1021
XmiI GTMKAC 2 cut(s) 211, 1009
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.