FvH4_6g03360

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000230
Physical Location & Seq
Forward (+)
1857268 .. 1858375
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03360.t1

Sequence Viewer

Length: 774 bp
ATGAGAGAACCACTAAACATTCCACCAGATTTCTGTACAAAAAATCCTACAAGGTGTCCTTATGGTCTTACATATGGAGGCGGGGGAATCAGTGAAGGTGAGGCTACTTTGACATCCAGGACAGGGGAGGCTATCACCCTACCAGATATTATCTTTGGGTGCACGCATTCCCTCGTAGACCCAGCTAATACTGATCCCAAAATCGAAAGCAAGATCAATTTCGGAAATGGGAGTGAAGTTTCAGGTGAAGGGGTTGTCTCAACACCATTGGTGCCAGACGAGGATATGCACTATGTTGTGATGGCAGAAGGAATGACCATCGGAAATGAATTTGTTCCGTTTTACTCAAACGTGACATCGCTCAACAAAATTAAGATGGTACTCGACTCAGGCTCAACTTTAACGACGTTACCTCAATATATTTTTGACAGGCTGATAACTGAGCTGAACAAGACACTTGATCCGCAATTGCGACCGTTCGTTATGACTGAACCAAGAACGCTTTTCTGCATAAACTCGACGACAATTCCAGAAGAACCAAAAATGAGTTTTCATTTCGAGGGTGGTGCCGAAGTGCAGTTAGCGACAGAAAAAATGTTCATGAAAAAAGATGATGAAAATAACATATCATGTTTGGGAATCCTACGAGGTAATGAGGGTTCATTAGAACCTGATATGGGTATTTCAGGAGCCGTTACGCAGGAGAATATGTTGGTTGGTTTTGACCTGGATAGAGAAGTGGTATCCTTCAAGCCAACTGATTGCTCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

258

Amino Acids

28.09

Weight (kDa)

4.46

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 69 - 250 8.3e-10 Eukaryotic aspartyl protease
TAXi_C PF14541 97 - 251 4e-20 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 271, 566
AccI GTMKAC 1 cut(s) 177
AciI CCGC 2 cut(s) 81, 464
AclWI GGATC 2 cut(s) 188, 455
AcsI RAATTY 1 cut(s) 329
AfaI GTAC 2 cut(s) 37, 381
AfiI CCNNNNNNNGG 2 cut(s) 123, 677
AgsI TTSAA 1 cut(s) 751
AjnI CCWGG 2 cut(s) 116, 726
AluBI AGCT 2 cut(s) 185, 445
AluI AGCT 2 cut(s) 185, 445
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 262
Alw44I GTGCAC 1 cut(s) 160
AlwI GGATC 2 cut(s) 188, 455
ApaLI GTGCAC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 329
Asp700I GAANNNNTTC 1 cut(s) 333
AsuHPI GGTGA 3 cut(s) 110, 127, 257
BaeGI GKGCMC 1 cut(s) 164
BanI GGYRCC 2 cut(s) 271, 566
Bbv12I GWGCWC 1 cut(s) 164
BccI CCATC 3 cut(s) 295, 326, 370
BceAI ACGGC 1 cut(s) 677
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 2 cut(s) 118, 728
BciVI GTATCC 1 cut(s) 754
BcoDI GTCTC 1 cut(s) 262
BfuI GTATCC 1 cut(s) 754
Bme1390I CCNGG 2 cut(s) 118, 728
BmiI GGNNCC 3 cut(s) 273, 568, 691
BmrFI CCNGG 2 cut(s) 118, 728
BsaXI ACNNNNNCTCC 2 cut(s) 695, 725
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 677
BseBI CCWGG 2 cut(s) 118, 728
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 123, 677
BseMII CTCAG 2 cut(s) 402, 432
BseSI GKGCMC 1 cut(s) 164
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 596
Bsh1285I CGRYCG 1 cut(s) 476
BshNI GGYRCC 2 cut(s) 271, 566
BsiEI CGRYCG 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 123, 677
BsmAI GTCTC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 164
Bsp1407I TGTACA 1 cut(s) 35
Bsp143I GATC 3 cut(s) 193, 213, 460
BspACI CCGC 2 cut(s) 81, 464
BspCNI CTCAG 2 cut(s) 401, 433
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 3 cut(s) 273, 568, 691
BspPI GGATC 2 cut(s) 188, 455
BspT107I GGYRCC 2 cut(s) 271, 566
BsrGI TGTACA 1 cut(s) 35
BssMI GATC 3 cut(s) 193, 213, 460
Bst2UI CCWGG 2 cut(s) 118, 728
Bst4CI ACNGT 1 cut(s) 477
BstAUI TGTACA 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 2 cut(s) 388, 441
BstF5I GGATG 1 cut(s) 113
BstKTI GATC 3 cut(s) 196, 216, 463
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 3 cut(s) 193, 213, 460
BstMCI CGRYCG 1 cut(s) 476
BstNI CCWGG 2 cut(s) 118, 728
BstSCI CCNGG 2 cut(s) 116, 726
BstSLI GKGCMC 1 cut(s) 164
BsuI GTATCC 1 cut(s) 754
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 164
CciI TCATGA 1 cut(s) 600
Csp6I GTAC 2 cut(s) 36, 380
CviAII CATG 2 cut(s) 601, 630
CviJI RGCY 8 cut(s) 104, 131, 185, 393, 433, 445, 692, 754
CviKI_1 RGCY 8 cut(s) 104, 131, 185, 393, 433, 445, 692, 754
CviQI GTAC 2 cut(s) 36, 380
DdeI CTNAG 2 cut(s) 388, 441
DpnI GATC 3 cut(s) 195, 215, 462
DpnII GATC 3 cut(s) 193, 213, 460
EcoRII CCWGG 2 cut(s) 116, 726
FaeI CATG 2 cut(s) 604, 633
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FatI CATG 2 cut(s) 600, 629
FauI CCCGC 1 cut(s) 74
FauNDI CATATG 1 cut(s) 73
FblI GTMKAC 1 cut(s) 177
FokI GGATG 1 cut(s) 100
GsaI CCCAGC 1 cut(s) 185
Hin1II CATG 2 cut(s) 604, 633
HinfI GANTC 3 cut(s) 87, 386, 639
HphI GGTGA 3 cut(s) 110, 127, 257
Hpy166II GTNNAC 2 cut(s) 162, 178
Hpy188I TCNGA 2 cut(s) 224, 323
Hpy188III TCNNGA 3 cut(s) 530, 601, 687
Hpy8I GTNNAC 2 cut(s) 162, 178
Hpy99I CGWCG 2 cut(s) 409, 523
HpyAV CCTTC 4 cut(s) 89, 242, 302, 757
HpyCH4III ACNGT 1 cut(s) 477
HpyCH4IV ACGT 2 cut(s) 351, 407
HpyCH4V TGCA 4 cut(s) 162, 289, 510, 577
HpyF3I CTNAG 2 cut(s) 388, 441
HpySE526I ACGT 2 cut(s) 351, 407
Hsp92II CATG 2 cut(s) 604, 633
Kzo9I GATC 3 cut(s) 193, 213, 460
LmnI GCTCC 1 cut(s) 689
MaeII ACGT 2 cut(s) 351, 407
MaeIII GTNAC 3 cut(s) 352, 408, 694
MalI GATC 3 cut(s) 195, 215, 462
MboI GATC 3 cut(s) 193, 213, 460
MboII GAAGA 1 cut(s) 545
MfeI CAATTG 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 5 cut(s) 217, 329, 369, 467, 525
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 9 cut(s) 71, 94, 121, 182, 274, 423, 553, 641, 649
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 2 cut(s) 372, 401
MspR9I CCNGG 2 cut(s) 118, 728
MunI CAATTG 1 cut(s) 467
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 2 cut(s) 118, 728
NdeI CATATG 1 cut(s) 73
NdeII GATC 3 cut(s) 193, 213, 460
NlaIII CATG 2 cut(s) 604, 633
NlaIV GGNNCC 3 cut(s) 273, 568, 691
NmuCI GTSAC 1 cut(s) 352
PagI TCATGA 1 cut(s) 600
PctI GAATGC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 87, 639
PfoI TCCNGGA 1 cut(s) 116
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
Psp6I CCWGG 2 cut(s) 116, 726
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 2 cut(s) 116, 726
PspN4I GGNNCC 3 cut(s) 273, 568, 691
PsrI GAACNNNNNNTAC 2 cut(s) 643, 675
RsaI GTAC 2 cut(s) 37, 381
RsaNI GTAC 2 cut(s) 36, 380
SaqAI TTAA 2 cut(s) 372, 401
Sau3AI GATC 3 cut(s) 193, 213, 460
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 2 cut(s) 118, 728
SduI GDGCHC 1 cut(s) 164
Sse9I AATT 5 cut(s) 217, 329, 369, 467, 525
SsiI CCGC 2 cut(s) 81, 464
StyD4I CCNGG 2 cut(s) 116, 726
TaaI ACNGT 1 cut(s) 477
TaiI ACGT 2 cut(s) 354, 410
TaqI TCGA 4 cut(s) 204, 384, 518, 558
TasI AATT 5 cut(s) 217, 329, 369, 467, 525
TatI WGTACW 1 cut(s) 35
TfiI GAWTC 2 cut(s) 87, 639
Tru1I TTAA 2 cut(s) 372, 401
Tru9I TTAA 2 cut(s) 372, 401
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 6 cut(s) 342, 542, 589, 617, 630, 651
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 1 cut(s) 97
VneI GTGCAC 1 cut(s) 160
XapI RAATTY 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.