Rh3DG064000

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000230
Physical Location & Seq
Forward (+)
4251962 .. 4252885
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG064000.1

Sequence Viewer

Length: 924 bp
ATGGCTGCCTTTTGCGATTTACACAAGAATAATTATACTAGAGCAGTAATTGCTATTCTTTTATTTCATCTTATATATTATCCTGTTATAGCAGCAGCCAATATCGACAATAATTATGGTGGCTTCAGCGCGCATCTTATTCGAATAAATTTCAAAAATCCACCATTGCACAGACCCAGACACCACAAATCTGGTCGACGTTTGATAGGTCCAGACACGCCACAAGCTACACTACAAACTGATCCAGATAAACAAGATGGACATCTTATGAAGCTCTCCGTAGGAACCCCGGCCTTCGATATCTATTTAGCAATTGATACAGGCAGCACTCTATTATGGACACATTGCCAGCCATGTCAAACTTGCAAAGAGACGAAACATGGCATGTTTGACCCCAAAAAATCCTCAACTTATAAGGATGTTCCTTGTTCTGCGGGTGAGTGCAAAATTCTTGGCCAGTTCGAACAAGATGATGGCTATTGCAAAGATCCTAAAGACACTTGCAGGTATTATTTCGAGTATTTAGATACGACATTCTCTACAGGTGTAATGGCTAAAGAAACAGTTACCTTAAATACCACATCAGGTAAGGTTGTAACCCTAAAAGATATTCTTATTGGGTGTGCGCAAGAGCAGAAAGGTGCTACTTACACGGACGATGAAATGGGAATAATTGGGCTTGGAAAAGGGAACTTGTCATTTGTTTCTCAAATTGCTCCCTATGCTGGAGGCAAAAAATTCTCTCATTGTTTCGTGCCTAGGGATACTGATCCCAATATCGAAAGCAAGATCAATTTCGGAAAAGGGAGTGAAGTTTTGGGTGAAGGGGTGGTGTCAACACCATTGCTCGAATCACGCGGGGATGCTTATGTGATAGAAGTAGAAGGAGTTACTATCGGAAATGATTTAATTTGTTCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

307

Amino Acids

33.7

Weight (kDa)

6.2

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 89 - 267 5.8e-48 Xylanase inhibitor N-terminal
Asp PF00026 90 - 140 1.7e-08 Eukaryotic aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
Acc16I TGCGCA 1 cut(s) 627
Acc36I ACCTGC 1 cut(s) 495
AccI GTMKAC 1 cut(s) 196
AccII CGCG 2 cut(s) 131, 858
AciI CCGC 2 cut(s) 434, 858
AclWI GGATC 3 cut(s) 236, 482, 764
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 3 cut(s) 148, 447, 737
AcuI CTGAAG 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 725
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 2 cut(s) 227, 274
AluI AGCT 2 cut(s) 227, 274
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 3 cut(s) 236, 482, 764
AoxI GGCC 2 cut(s) 291, 454
ApeKI GCWGC 4 cut(s) 5, 92, 95, 324
ApoI RAATTY 3 cut(s) 148, 447, 737
AspA2I CCTAGG 1 cut(s) 758
AspLEI GCGC 3 cut(s) 131, 133, 628
AspS9I GGNCC 1 cut(s) 209
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 449, 833
AsuII TTCGAA 2 cut(s) 142, 462
AvaII GGWCC 1 cut(s) 209
AvrII CCTAGG 1 cut(s) 758
BalI TGGCCA 1 cut(s) 456
BbvI GCAGC 3 cut(s) 104, 107, 336
BccI CCATC 2 cut(s) 251, 467
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciVI GTATCC 1 cut(s) 757
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 2 cut(s) 39, 759
BfmI CTRYAG 1 cut(s) 540
BfuAI ACCTGC 1 cut(s) 495
BfuI GTATCC 1 cut(s) 757
BisI GCNGC 4 cut(s) 6, 93, 96, 325
BlnI CCTAGG 1 cut(s) 758
BlsI GCNGC 4 cut(s) 7, 94, 97, 326
Bme1390I CCNGG 1 cut(s) 290
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 2 cut(s) 142, 853
BpmI CTGGAG 1 cut(s) 747
Bpu14I TTCGAA 2 cut(s) 142, 462
BpuMI CCSGG 1 cut(s) 290
BsaBI GATNNNNATC 2 cut(s) 261, 768
BsaJI CCNNGG 2 cut(s) 288, 758
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse1I ACTGG 1 cut(s) 457
Bse3DI GCAATG 3 cut(s) 164, 343, 842
Bse8I GATNNNNATC 2 cut(s) 261, 768
BseDI CCNNGG 2 cut(s) 288, 758
BseGI GGATG 2 cut(s) 424, 868
BseJI GATNNNNATC 2 cut(s) 261, 768
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMI GCAATG 3 cut(s) 164, 343, 842
BseNI ACTGG 1 cut(s) 457
BsePI GCGCGC 1 cut(s) 129
BseXI GCAGC 3 cut(s) 104, 107, 336
Bsh1236I CGCG 2 cut(s) 131, 858
BshFI GGCC 2 cut(s) 293, 456
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 725
BsmAI GTCTC 1 cut(s) 365
BsmBI CGTCTC 1 cut(s) 365
BsnI GGCC 2 cut(s) 293, 456
Bsp119I TTCGAA 2 cut(s) 142, 462
Bsp143I GATC 4 cut(s) 241, 487, 769, 789
BspACI CCGC 2 cut(s) 434, 858
BspANI GGCC 2 cut(s) 293, 456
BspFNI CGCG 2 cut(s) 131, 858
BspLI GGNNCC 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 3 cut(s) 236, 482, 764
BspT104I TTCGAA 2 cut(s) 142, 462
BsrDI GCAATG 3 cut(s) 164, 343, 842
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 2 cut(s) 288, 758
BssHII GCGCGC 1 cut(s) 129
BssMI GATC 4 cut(s) 241, 487, 769, 789
BssT1I CCWWGG 1 cut(s) 758
Bst4CI ACNGT 1 cut(s) 565
BstAPI GCANNNNNTGC 1 cut(s) 50
BstBI TTCGAA 2 cut(s) 142, 462
BstC8I GCNNGC 2 cut(s) 131, 350
BstF5I GGATG 2 cut(s) 424, 868
BstFNI CGCG 2 cut(s) 131, 858
BstHHI GCGC 3 cut(s) 131, 133, 628
BstKTI GATC 4 cut(s) 244, 490, 772, 792
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 4 cut(s) 241, 487, 769, 789
BstMWI GCNNNNNNNGC 2 cut(s) 50, 722
BstNSI RCATGY 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 540
BstUI CGCG 2 cut(s) 131, 858
BstV1I GCAGC 3 cut(s) 104, 107, 336
BstX2I RGATCY 1 cut(s) 487
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 1 cut(s) 487
BsuI GTATCC 1 cut(s) 757
BsuRI GGCC 2 cut(s) 293, 456
BtsCI GGATG 2 cut(s) 424, 868
BveI ACCTGC 1 cut(s) 495
Cac8I GCNNGC 2 cut(s) 131, 350
CfoI GCGC 3 cut(s) 131, 133, 628
Cfr13I GGNCC 1 cut(s) 209
CviAII CATG 3 cut(s) 354, 380, 385
DpnI GATC 4 cut(s) 243, 489, 771, 791
DpnII GATC 4 cut(s) 241, 487, 769, 789
EaeI YGGCCR 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 758
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 109
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 758
ErhI CCWWGG 1 cut(s) 758
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 3 cut(s) 357, 383, 388
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FatI CATG 3 cut(s) 353, 379, 384
FauI CCCGC 2 cut(s) 427, 851
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 4 cut(s) 6, 93, 96, 325
FokI GGATG 2 cut(s) 431, 875
Fsp4HI GCNGC 4 cut(s) 6, 93, 96, 325
FspBI CTAG 2 cut(s) 39, 759
FspI TGCGCA 1 cut(s) 627
GlaI GCGC 3 cut(s) 130, 132, 627
GluI GCNGC 4 cut(s) 6, 93, 96, 325
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 2 cut(s) 293, 456
HapII CCGG 1 cut(s) 290
HhaI GCGC 3 cut(s) 131, 133, 628
Hin1II CATG 3 cut(s) 357, 383, 388
Hin6I GCGC 3 cut(s) 129, 131, 626
HinP1I GCGC 3 cut(s) 129, 131, 626
HincII GTYRAC 2 cut(s) 197, 837
HindII GTYRAC 2 cut(s) 197, 837
HinfI GANTC 1 cut(s) 851
HpaII CCGG 1 cut(s) 290
HphI GGTGA 2 cut(s) 449, 833
Hpy166II GTNNAC 2 cut(s) 197, 837
Hpy188I TCNGA 2 cut(s) 800, 899
Hpy188III TCNNGA 2 cut(s) 212, 245
Hpy8I GTNNAC 2 cut(s) 197, 837
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 3 cut(s) 304, 818, 878
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 5 cut(s) 169, 366, 444, 483, 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 722
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 3 cut(s) 357, 383, 388
HspAI GCGC 3 cut(s) 129, 131, 626
Kzo9I GATC 4 cut(s) 241, 487, 769, 789
LmnI GCTCC 1 cut(s) 721
Lsp1109I GCAGC 3 cut(s) 104, 107, 336
LweI GCATC 2 cut(s) 142, 853
MaeI CTAG 2 cut(s) 39, 759
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 3 cut(s) 565, 595, 889
MalI GATC 4 cut(s) 243, 489, 771, 791
MboI GATC 4 cut(s) 241, 487, 769, 789
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 1 cut(s) 487
MlsI TGGCCA 1 cut(s) 456
MluNI TGGCCA 1 cut(s) 456
MnlI CCTC 2 cut(s) 415, 722
Mox20I TGGCCA 1 cut(s) 456
MscI TGGCCA 1 cut(s) 456
MseI TTAA 3 cut(s) 572, 908, 922
Msp20I TGGCCA 1 cut(s) 456
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 290
MunI CAATTG 1 cut(s) 312
MvnI CGCG 2 cut(s) 131, 858
MwoI GCNNNNNNNGC 2 cut(s) 50, 722
NciI CCSGG 1 cut(s) 290
NdeII GATC 4 cut(s) 241, 487, 769, 789
NlaIII CATG 3 cut(s) 357, 383, 388
NlaIV GGNNCC 1 cut(s) 286
NsbI TGCGCA 1 cut(s) 627
NspI RCATGY 1 cut(s) 388
NspV TTCGAA 2 cut(s) 142, 462
PauI GCGCGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 851
PkrI GCNGC 4 cut(s) 7, 94, 97, 326
PsiI TTATAA 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 209
PsuI RGATCY 1 cut(s) 487
PteI GCGCGC 1 cut(s) 129
SalI GTCGAC 1 cut(s) 195
SaqAI TTAA 3 cut(s) 572, 908, 922
SatI GCNGC 4 cut(s) 6, 93, 96, 325
Sau3AI GATC 4 cut(s) 241, 487, 769, 789
Sau96I GGNCC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 290
SfaNI GCATC 2 cut(s) 142, 853
SfcI CTRYAG 1 cut(s) 540
SfuI TTCGAA 2 cut(s) 142, 462
SinI GGWCC 1 cut(s) 209
SsiI CCGC 2 cut(s) 434, 858
SspMI CTAG 2 cut(s) 39, 759
StyD4I CCNGG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 758
TaaI ACNGT 1 cut(s) 565
TaiI ACGT 1 cut(s) 202
TaqI TCGA 8 cut(s) 105, 142, 196, 297, 462, 516, 780, 849
TfiI GAWTC 1 cut(s) 851
Tru1I TTAA 3 cut(s) 572, 908, 922
Tru9I TTAA 3 cut(s) 572, 908, 922
TseI GCWGC 4 cut(s) 5, 92, 95, 324
TspDTI ATGAA 3 cut(s) 56, 284, 675
TspGWI ACGGA 3 cut(s) 268, 668, 907
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 3 cut(s) 148, 447, 737
XceI RCATGY 1 cut(s) 388
XmaJI CCTAGG 1 cut(s) 758
XmiI GTMKAC 1 cut(s) 196
XspI CTAG 2 cut(s) 39, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.