Rroxscaffold_6G00428380

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000230
Physical Location & Seq
Forward (+)
48787525 .. 48788775
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428380.1

Sequence Viewer

Length: 1251 bp
ATGGGTCCAGAAACTCCGCAATCAACACTAGCAACCGATCCAGATGGTAGCGAACATCTTCTGAAATTGTCAATAGGAACTCCGCCCTTCGATATCTATGTAATTGCTGATACAGGCAGCACTCTACTATGGACTCAATGCCAGCCATGTAAAAGTTGCTTCAAGACGAAACATGCCATATTTGACCCGAAAGAATCCTCAACTTATAGGAACATTACTTGTTCTGAAAGCGAGTGTAGACTTGTTGACGAGTTCTCACCTCGAAACTATTGCAAAAGAAATCCTCAAGCTGCTTGCATGTATGATTTTACGTATGCAGATGAGTCATACTCTAAAGGTACAGTGGCGAAAGAAGTAATTACCTTGAAGTCCACGTCAGGTAAGGTTGTGACCCTAAAAGATATTGTCATTGGGTGTGGGCAAAACAACAGTGGTATAGAGGCAAGTGAGAATGAAATGGGAATAATAGGGCTTGGACGCGGGCCCTTGTCATTTGCTTCTCAAATCAGTCCCTATGTTGGAGGCAAAAAATTCTCGTATTGCTTTGTGCCTCTTAGTACTGATCCCAAAATCGAAAGTACTATTAATTTCGGGAATGGGAGTGAAGTTTCGGGTGAAGGGGTGGTGTCAACACCTTTGATCGATGTAGAATCGGACATGGATGGTTATCTTGTGACGATGAAAGGAATTACAATTGGAAATGATTTTGTTCCTTTTAACTCAACAGGAACATTGCTTGAGAAAGGTAACACGTTGATCGACTCAGGCACAGCTTTATCATATTTACCTCAAGATTTTTATGATCGGGTGGTGAATCAGCTGGTAAACAAACTTGATCCGAATTTGGAGGTAATCAATTATATTGACGAAGATAATTCAAGTAGCATATGCTTCAACACGACAACGCTTCCAAAAGCACCAAATATGGCTGTGCATTTTGACGATGGTGGAAAATTACAATTAACAGCGGAACATATATTTAGAGACGAAGAGAAAAAATTAGTCTGCCTTGGACTAAGGAACTCTAGTAAGCAGGGCTTCTCTAGTGATGATATCGGTGTTCTCGGAAACAATGTTCAAGAAAATTTCTTGATTGGTTTTGACTTGGATAAAAAATGGGTCTCCTTCAAGCCTACTAATTGCATAAAGACGGCTGCTGCTACTGCTAGTGGTGCTAATATTGCTACTCATCTCTTTTCCATTTTCTCTACTTGCCTTTCGTATTTGTTTTTGATTGTGAAATCATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

416

Amino Acids

45.23

Weight (kDa)

4.89

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 21 - 199 6.4e-49 Xylanase inhibitor N-terminal
Asp PF00026 21 - 71 3.8e-08 Eukaryotic aspartyl protease
Asp PF00026 73 - 376 4.1e-11 Eukaryotic aspartyl protease
TAXi_C PF14541 223 - 377 6.2e-24 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 238
AccII CGCG 1 cut(s) 480
AciI CCGC 4 cut(s) 17, 83, 480, 968
AclWI GGATC 3 cut(s) 32, 557, 830
AcsI RAATTY 3 cut(s) 530, 841, 1084
AfaI GTAC 3 cut(s) 340, 559, 580
AfiI CCNNNNNNNGG 1 cut(s) 518
AflIII ACRYGT 1 cut(s) 750
AgsI TTSAA 6 cut(s) 163, 367, 879, 895, 1079, 1129
AjiI CACGTC 1 cut(s) 375
AloI GAACNNNNNNTCC 2 cut(s) 1059, 1091
AluBI AGCT 3 cut(s) 290, 773, 820
AluI AGCT 3 cut(s) 290, 773, 820
Alw26I GTCTC 2 cut(s) 978, 1126
AlwI GGATC 3 cut(s) 32, 557, 830
AoxI GGCC 1 cut(s) 482
ApaI GGGCCC 1 cut(s) 486
ApeKI GCWGC 4 cut(s) 117, 290, 1154, 1157
ApoI RAATTY 3 cut(s) 530, 841, 1084
AseI ATTAAT 1 cut(s) 585
Asp700I GAANNNNTTC 1 cut(s) 57
AspS9I GGNCC 3 cut(s) 5, 482, 483
AsuHPI GGTGA 3 cut(s) 249, 626, 823
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 486
BanII GRGCYC 1 cut(s) 486
BbvI GCAGC 4 cut(s) 129, 277, 1141, 1144
BccI CCATC 3 cut(s) 38, 656, 938
BceAI ACGGC 1 cut(s) 1167
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BcoDI GTCTC 2 cut(s) 978, 1126
BfaI CTAG 5 cut(s) 29, 1026, 1044, 1167, 1249
BisI GCNGC 4 cut(s) 118, 291, 1155, 1158
BlsI GCNGC 4 cut(s) 119, 292, 1156, 1159
BmcAI AGTACT 2 cut(s) 559, 580
Bme18I GGWCC 1 cut(s) 5
BmgBI CACGTC 1 cut(s) 375
BmgT120I GGNCC 3 cut(s) 5, 482, 483
BmiI GGNNCC 2 cut(s) 6, 484
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpuEI CTTGAG 3 cut(s) 270, 758, 774
Bsa29I ATCGAT 1 cut(s) 642
BsaAI YACGTR 1 cut(s) 312
BsaBI GATNNNNATC 1 cut(s) 666
BsaI GGTCTC 1 cut(s) 1126
BsaJI CCNNGG 1 cut(s) 1009
Bsc4I CCNNNNNNNGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 731
Bse8I GATNNNNATC 1 cut(s) 666
BseCI ATCGAT 1 cut(s) 642
BseDI CCNNGG 1 cut(s) 1009
BseGI GGATG 2 cut(s) 667, 1244
BseJI GATNNNNATC 1 cut(s) 666
BseLI CCNNNNNNNGG 1 cut(s) 518
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 1 cut(s) 777
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 4 cut(s) 129, 277, 1141, 1144
Bsh1236I CGCG 1 cut(s) 480
BshFI GGCC 1 cut(s) 484
BshVI ATCGAT 1 cut(s) 642
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 1 cut(s) 518
BsmAI GTCTC 2 cut(s) 978, 1126
BsmBI CGTCTC 1 cut(s) 978
BsmFI GGGAC 1 cut(s) 495
BsnI GGCC 1 cut(s) 484
Bso31I GGTCTC 1 cut(s) 1126
Bsp120I GGGCCC 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 6 cut(s) 37, 562, 639, 756, 802, 835
BspACI CCGC 4 cut(s) 17, 83, 480, 968
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 1 cut(s) 776
BspDI ATCGAT 1 cut(s) 642
BspFNI CGCG 1 cut(s) 480
BspLI GGNNCC 2 cut(s) 6, 484
BspPI GGATC 3 cut(s) 32, 557, 830
BspTNI GGTCTC 1 cut(s) 1126
BsrDI GCAATG 1 cut(s) 731
BssECI CCNNGG 1 cut(s) 1009
BssMI GATC 6 cut(s) 37, 562, 639, 756, 802, 835
BssT1I CCWWGG 1 cut(s) 1009
Bst4CI ACNGT 2 cut(s) 343, 431
Bst6I CTCTTC 1 cut(s) 984
BstBAI YACGTR 1 cut(s) 312
BstC8I GCNNGC 3 cut(s) 143, 295, 482
BstDEI CTNAG 3 cut(s) 554, 763, 1016
BstF5I GGATG 2 cut(s) 667, 1244
BstFNI CGCG 1 cut(s) 480
BstKTI GATC 6 cut(s) 40, 565, 642, 759, 805, 838
BstMAI GTCTC 2 cut(s) 978, 1126
BstMBI GATC 6 cut(s) 37, 562, 639, 756, 802, 835
BstMWI GCNNNNNNNGC 3 cut(s) 1163, 1172, 1181
BstNSI RCATGY 2 cut(s) 176, 301
BstSLI GKGCMC 1 cut(s) 486
BstSNI TACGTA 1 cut(s) 312
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 4 cut(s) 129, 277, 1141, 1144
Bsu15I ATCGAT 1 cut(s) 642
BsuRI GGCC 1 cut(s) 484
BsuTUI ATCGAT 1 cut(s) 642
BtrI CACGTC 1 cut(s) 375
BtsCI GGATG 2 cut(s) 667, 1244
BtsIMutI CAGTG 2 cut(s) 348, 436
Cac8I GCNNGC 3 cut(s) 143, 295, 482
Cfr13I GGNCC 3 cut(s) 5, 482, 483
ClaI ATCGAT 1 cut(s) 642
CseI GACGC 1 cut(s) 486
Csp6I GTAC 3 cut(s) 339, 558, 579
CviAII CATG 4 cut(s) 147, 173, 298, 658
CviQI GTAC 3 cut(s) 339, 558, 579
DdeI CTNAG 3 cut(s) 554, 763, 1016
DpnI GATC 6 cut(s) 39, 564, 641, 758, 804, 837
DpnII GATC 6 cut(s) 37, 562, 639, 756, 802, 835
Eam1104I CTCTTC 1 cut(s) 984
EarI CTCTTC 1 cut(s) 984
EciI GGCGGA 1 cut(s) 72
Eco105I TACGTA 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 1009
Eco24I GRGCYC 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 1126
Eco32I GATATC 2 cut(s) 94, 1054
Eco47I GGWCC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 483
EcoRV GATATC 2 cut(s) 94, 1054
EcoT14I CCWWGG 1 cut(s) 1009
EcoT38I GRGCYC 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 1009
Esp3I CGTCTC 1 cut(s) 978
FaeI CATG 4 cut(s) 150, 176, 301, 661
FalI AAGNNNNNCTT 2 cut(s) 1022, 1054
FaqI GGGAC 1 cut(s) 495
FatI CATG 4 cut(s) 146, 172, 297, 657
FauI CCCGC 1 cut(s) 473
FauNDI CATATG 1 cut(s) 887
FblI GTMKAC 1 cut(s) 238
Fnu4HI GCNGC 4 cut(s) 118, 291, 1155, 1158
FokI GGATG 2 cut(s) 674, 1231
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 4 cut(s) 118, 291, 1155, 1158
FspBI CTAG 5 cut(s) 29, 1026, 1044, 1167, 1249
GluI GCNGC 4 cut(s) 118, 291, 1155, 1158
HaeIII GGCC 1 cut(s) 484
HgaI GACGC 1 cut(s) 486
Hin1II CATG 4 cut(s) 150, 176, 301, 661
HincII GTYRAC 2 cut(s) 247, 630
HindII GTYRAC 2 cut(s) 247, 630
HinfI GANTC 6 cut(s) 133, 194, 323, 650, 761, 814
HphI GGTGA 3 cut(s) 249, 626, 823
Hpy166II GTNNAC 5 cut(s) 239, 247, 372, 630, 826
Hpy188I TCNGA 5 cut(s) 63, 226, 655, 840, 1067
Hpy188III TCNNGA 7 cut(s) 8, 41, 163, 592, 791, 1079, 1090
Hpy8I GTNNAC 5 cut(s) 239, 247, 372, 630, 826
HpyAV CCTTC 3 cut(s) 97, 611, 1135
HpyCH4III ACNGT 2 cut(s) 343, 431
HpyCH4IV ACGT 3 cut(s) 311, 374, 752
HpyCH4V TGCA 5 cut(s) 273, 297, 317, 934, 1143
HpyF10VI GCNNNNNNNGC 3 cut(s) 1163, 1172, 1181
HpyF3I CTNAG 3 cut(s) 554, 763, 1016
HpySE526I ACGT 3 cut(s) 311, 374, 752
Hsp92II CATG 4 cut(s) 150, 176, 301, 661
Kzo9I GATC 6 cut(s) 37, 562, 639, 756, 802, 835
LpnPI CCDG 9 cut(s) 21, 54, 99, 155, 363, 711, 750, 806, 1019
Lsp1109I GCAGC 4 cut(s) 129, 277, 1141, 1144
MaeI CTAG 5 cut(s) 29, 1026, 1044, 1167, 1249
MaeII ACGT 3 cut(s) 311, 374, 752
MaeIII GTNAC 3 cut(s) 388, 673, 746
MalI GATC 6 cut(s) 39, 564, 641, 758, 804, 837
MboI GATC 6 cut(s) 37, 562, 639, 756, 802, 835
MboII GAAGA 3 cut(s) 50, 881, 1001
MfeI CAATTG 1 cut(s) 693
MhlI GDGCHC 1 cut(s) 486
MlyI GAGTC 3 cut(s) 127, 332, 755
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 8 cut(s) 208, 270, 294, 433, 515, 561, 798, 841
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 3 cut(s) 585, 717, 962
MspA1I CMGCKG 2 cut(s) 820, 968
MunI CAATTG 1 cut(s) 693
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 3 cut(s) 1163, 1172, 1181
NdeI CATATG 1 cut(s) 887
NdeII GATC 6 cut(s) 37, 562, 639, 756, 802, 835
NlaIII CATG 4 cut(s) 150, 176, 301, 661
NlaIV GGNNCC 2 cut(s) 6, 484
NmuCI GTSAC 2 cut(s) 388, 673
NspI RCATGY 2 cut(s) 176, 301
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 3 cut(s) 194, 650, 814
PkrI GCNGC 4 cut(s) 119, 292, 1156, 1159
PleI GAGTC 3 cut(s) 127, 331, 755
PpsI GAGTC 3 cut(s) 127, 331, 755
Ppu21I YACGTR 1 cut(s) 312
PshBI ATTAAT 1 cut(s) 585
PspN4I GGNNCC 2 cut(s) 6, 484
PspOMI GGGCCC 1 cut(s) 482
PspPI GGNCC 3 cut(s) 5, 482, 483
PvuII CAGCTG 1 cut(s) 820
RsaI GTAC 3 cut(s) 340, 559, 580
RsaNI GTAC 3 cut(s) 339, 558, 579
SaqAI TTAA 3 cut(s) 585, 717, 962
SatI GCNGC 4 cut(s) 118, 291, 1155, 1158
Sau3AI GATC 6 cut(s) 37, 562, 639, 756, 802, 835
Sau96I GGNCC 3 cut(s) 5, 482, 483
ScaI AGTACT 2 cut(s) 559, 580
SchI GAGTC 3 cut(s) 127, 332, 755
SduI GDGCHC 1 cut(s) 486
SinI GGWCC 1 cut(s) 5
SmlI CTYRAG 3 cut(s) 285, 737, 789
SmoI CTYRAG 3 cut(s) 285, 737, 789
SnaBI TACGTA 1 cut(s) 312
SsiI CCGC 4 cut(s) 17, 83, 480, 968
SspI AATATT 1 cut(s) 1180
SspMI CTAG 5 cut(s) 29, 1026, 1044, 1167, 1249
StyI CCWWGG 1 cut(s) 1009
TaaI ACNGT 2 cut(s) 343, 431
TaiI ACGT 3 cut(s) 314, 377, 755
TaqI TCGA 5 cut(s) 90, 262, 573, 642, 759
TatI WGTACW 2 cut(s) 557, 578
TfiI GAWTC 3 cut(s) 194, 650, 814
Tru1I TTAA 3 cut(s) 585, 717, 962
Tru9I TTAA 3 cut(s) 585, 717, 962
TscAI CASTG 2 cut(s) 348, 436
TseFI GTSAC 2 cut(s) 388, 673
TseI GCWGC 4 cut(s) 117, 290, 1154, 1157
Tsp45I GTSAC 2 cut(s) 388, 673
TspDTI ATGAA 2 cut(s) 468, 695
TspRI CASTG 2 cut(s) 348, 436
VpaK11BI GGWCC 1 cut(s) 5
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 3 cut(s) 530, 841, 1084
XceI RCATGY 2 cut(s) 176, 301
XmiI GTMKAC 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 5 cut(s) 29, 1026, 1044, 1167, 1249
ZrmI AGTACT 2 cut(s) 559, 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.