Rh3BG247800

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000230
Physical Location & Seq
Forward (+)
23618998 .. 23619381
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG247800.1

Sequence Viewer

Length: 384 bp
ATGAAGTTCTCAATGGGAACCTCGCCCTCAGATATTTATTTAACTGCTGATACAGGCAGCACTCTAGTATGGATGCAATGCAAGCCGTGTAAACGTTGCTACAACACTAAATATGCCATGTTCGACCCGAGAAAATCCTCAACATATAGGAACATTACTTGTTATGCAAGGAAGTGTGGACTTGTCGATGATCAAAAACCACCAGGCCAATCACCAGAGTTTTGTAAAAAATTTGCTACAAGAAGGTGTACTTACCGTGTCGAGTATGGAGACACGTCATCTTCTGAAGGTGTATTGGCAAAAGAAACAATTGCCTTGACATTCAGGACAGGTAAGGTTATAACCCTAAAAGATAGTCATTGGGTATGGGCATTTGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

127

Amino Acids

14.51

Weight (kDa)

9.21

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 1 - 117 5.8e-26 Xylanase inhibitor N-terminal
Asp PF00026 3 - 51 2.7e-06 Eukaryotic aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
AclI AACGTT 1 cut(s) 94
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 1 cut(s) 250
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 1 cut(s) 377
AjiI CACGTC 1 cut(s) 276
AjnI CCWGG 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 264
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 204
AvaI CYCGRG 1 cut(s) 127
BbvI GCAGC 1 cut(s) 69
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 69
BshFI GGCC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 264
BsnI GGCC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 127
Bsp143I GATC 1 cut(s) 190
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 83
BssMI GATC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 207
BtrI CACGTC 1 cut(s) 276
BtsCI GGATG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 249
CviAII CATG 2 cut(s) 118, 381
CviJI RGCY 2 cut(s) 85, 207
CviKI_1 RGCY 2 cut(s) 85, 207
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 1 cut(s) 28
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 121, 384
FalI AAGNNNNNCTT 2 cut(s) 235, 267
FatI CATG 2 cut(s) 117, 380
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 2 cut(s) 121, 384
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 3 cut(s) 92, 179, 249
Hpy188I TCNGA 2 cut(s) 31, 286
Hpy188III TCNNGA 1 cut(s) 325
Hpy8I GTNNAC 3 cut(s) 92, 179, 249
HpyAV CCTTC 2 cut(s) 237, 281
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 2 cut(s) 94, 275
HpyCH4V TGCA 3 cut(s) 76, 81, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 28
HpySE526I ACGT 2 cut(s) 94, 275
Hsp92II CATG 2 cut(s) 121, 384
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 6 cut(s) 39, 189, 216, 228, 310, 315
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 63
MaeI CTAG 1 cut(s) 65
MaeII ACGT 2 cut(s) 94, 275
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 273
MfeI CAATTG 1 cut(s) 309
MluCI AATT 2 cut(s) 230, 309
MnlI CCTC 3 cut(s) 31, 37, 148
MseI TTAA 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 204
MunI CAATTG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 121, 384
NlaIV GGNNCC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 59
PsiI TTATAA 1 cut(s) 341
Psp1406I AACGTT 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 19
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 204
SetI ASST 7 cut(s) 23, 97, 248, 278, 292, 334, 339
SfaNI GCATC 1 cut(s) 63
Sse9I AATT 2 cut(s) 230, 309
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 2 cut(s) 97, 278
TaqI TCGA 3 cut(s) 123, 186, 261
TasI AATT 2 cut(s) 230, 309
TatI WGTACW 1 cut(s) 248
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 230
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.