Rh3DG039200

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000230
Physical Location & Seq
Forward (+)
2581897 .. 2583608
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG039200.1

Sequence Viewer

Length: 1080 bp
ATGTACAATAAAGTTTTTCGACGGTTGATCGGTGGAGACATGTTGGGATACCCACTACAAACCGATCCGATTAGTGGTATGCATATTTTGAAGTTATCAGTCGGAACCCCGCCCTCAGATATTTATGTAGTTGCTGATACAGGCAGCGATCTACTGTGGACGCAATGCAAGCCGTGTAACACTTGCTACAACACCAACCATACCATGTTCGACCCGAGAAAATCCTCAACTTATAGGAACATTACTTGTTCTGAAAAAGAGTGTAGATTTGTCGACGATTCCAAACCATCGAGCCAGTCACCAAGCTTTTGTAGAAAGCATCCTACAAGAATGTGTGCTTACAATATGACGTATGCAGACTCGACATCCACTATAGGCGTTTTGGCAAAAGAAACAGTTACCTTGACATCCAGGACAGGTGAGGTTGTAACCCTCGAAGATATTGTCTTTGGGTGTGGGCATTTGAACCATGAACATGTTTCAACTGGAAATGAAATGGGAATAATTGGGCTTGGACGTGGGCCTTTTGATCCCAAGTTTGAAAGCAAGATCCATTTCGGGAATGGGAGTGAAGTTTTGGGTGAAGGGGTTGTCTCAACACCATTGCCTGATGACAAGTATGGCTATACGGTGGTGGTAGAGGGAATTTCCATTGGTAATGAATTTGTTTCGTTCAACTCAACAGTGAAACCGCTCAAAAAGTTTAAGATGGTTGTCGACTCGGGCGCAAGTATTGGACATCTGAATAAGACGCTTGATCCAGAATTGGAGCCATCCATTGTATACGATGCCACGCAAGACAAAACACATTATTTAAGCTTTAACTCGATGACAATTCCAGACGAACCAAAAGTGGCATTTCATTTCATGGGTGGTGGCAAACTGGAGTTAATGGCTGAACAAATTTTCATCAAATCTCCACAGGATGAGAAAAAAGTCTTCTTTGGAATCGGCTCTATGGATATTTTTTCTGAAGTGAATTTTGGTGTTTTTGGAGCCAATCTGCAGGGAAATTTGTTGATTGGTTATGACCTCGATAGAAATGTGGCATCCTTCAAGCCAACTAATTGCCTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

359

Amino Acids

39.53

Weight (kDa)

5.7

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 30 - 175 7.9e-40 Xylanase inhibitor N-terminal
Asp PF00026 31 - 80 1.5e-08 Eukaryotic aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 694
AccI GTMKAC 3 cut(s) 273, 717, 783
AciI CCGC 2 cut(s) 110, 692
AclWI GGATC 4 cut(s) 59, 524, 544, 752
AcsI RAATTY 5 cut(s) 645, 662, 903, 979, 1012
AcuI CTGAAG 1 cut(s) 993
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 2 cut(s) 39, 475
AgsI TTSAA 6 cut(s) 91, 466, 483, 542, 676, 1057
AjiI CACGTC 1 cut(s) 518
AjnI CCWGG 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 966, 998
AluBI AGCT 2 cut(s) 306, 819
AluI AGCT 2 cut(s) 306, 819
Alw26I GTCTC 2 cut(s) 30, 598
AlwI GGATC 4 cut(s) 59, 524, 544, 752
Ama87I CYCGRG 2 cut(s) 214, 721
AoxI GGCC 1 cut(s) 521
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 5 cut(s) 645, 662, 903, 979, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
AspLEI GCGC 1 cut(s) 728
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 3 cut(s) 291, 431, 593
AvaI CYCGRG 2 cut(s) 214, 721
BbsI GAAGAC 1 cut(s) 931
BbvI GCAGC 1 cut(s) 156
BccI CCATC 3 cut(s) 295, 703, 781
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 412
BciVI GTATCC 1 cut(s) 41
BcoDI GTCTC 2 cut(s) 30, 598
BfmI CTRYAG 2 cut(s) 372, 1004
BfuI GTATCC 1 cut(s) 41
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 412
BmeT110I CYCGRG 2 cut(s) 214, 721
BmgBI CACGTC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 3 cut(s) 106, 771, 997
BmrFI CCNGG 1 cut(s) 412
BmsI GCATC 3 cut(s) 328, 778, 1058
BpiI GAAGAC 1 cut(s) 931
BpmI CTGGAG 1 cut(s) 905
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 3 cut(s) 295, 490, 888
Bse3DI GCAATG 2 cut(s) 170, 602
BseBI CCWGG 1 cut(s) 412
BseGI GGATG 6 cut(s) 319, 365, 407, 773, 931, 1049
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 2 cut(s) 170, 602
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 3 cut(s) 295, 490, 888
BseXI GCAGC 1 cut(s) 156
BshFI GGCC 1 cut(s) 523
BsiHKCI CYCGRG 2 cut(s) 214, 721
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 30, 598
BsnI GGCC 1 cut(s) 523
BsoBI CYCGRG 2 cut(s) 214, 721
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 6 cut(s) 27, 64, 148, 529, 549, 757
BspACI CCGC 2 cut(s) 110, 692
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 1 cut(s) 128
BspLI GGNNCC 3 cut(s) 106, 771, 997
BspMAI CTGCAG 1 cut(s) 1008
BspPI GGATC 4 cut(s) 59, 524, 544, 752
BsrBI CCGCTC 1 cut(s) 694
BsrDI GCAATG 2 cut(s) 170, 602
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 295, 490, 888
BssMI GATC 6 cut(s) 27, 64, 148, 529, 549, 757
BssNAI GTATAC 1 cut(s) 784
Bst1107I GTATAC 1 cut(s) 784
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 5 cut(s) 24, 156, 397, 631, 685
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 115
BstF5I GGATG 6 cut(s) 319, 365, 407, 773, 931, 1049
BstHHI GCGC 1 cut(s) 728
BstKTI GATC 6 cut(s) 30, 67, 151, 532, 552, 760
BstMAI GTCTC 2 cut(s) 30, 598
BstMBI GATC 6 cut(s) 27, 64, 148, 529, 549, 757
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNI CCWGG 1 cut(s) 412
BstNSI RCATGY 2 cut(s) 43, 479
BstSCI CCNGG 1 cut(s) 410
BstSFI CTRYAG 2 cut(s) 372, 1004
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 931
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
BstZ17I GTATAC 1 cut(s) 784
BsuI GTATCC 1 cut(s) 41
BsuRI GGCC 1 cut(s) 523
BtrI CACGTC 1 cut(s) 518
BtsCI GGATG 6 cut(s) 319, 365, 407, 773, 931, 1049
BtsIMutI CAGTG 1 cut(s) 690
Cac8I GCNNGC 1 cut(s) 170
CfoI GCGC 1 cut(s) 728
Cfr13I GGNCC 1 cut(s) 521
CseI GACGC 2 cut(s) 169, 760
Csp6I GTAC 1 cut(s) 4
CviAII CATG 5 cut(s) 40, 205, 470, 476, 868
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 115
DpnI GATC 6 cut(s) 29, 66, 150, 531, 551, 759
DpnII GATC 6 cut(s) 27, 64, 148, 529, 549, 757
Eco57I CTGAAG 1 cut(s) 993
Eco88I CYCGRG 2 cut(s) 214, 721
EcoRII CCWGG 1 cut(s) 410
EcoT22I ATGCAT 1 cut(s) 84
FaeI CATG 5 cut(s) 43, 208, 473, 479, 871
FatI CATG 5 cut(s) 39, 204, 469, 475, 867
FauI CCCGC 1 cut(s) 117
FblI GTMKAC 3 cut(s) 273, 717, 783
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 6 cut(s) 306, 352, 394, 760, 938, 1036
Fsp4HI GCNGC 1 cut(s) 145
GlaI GCGC 1 cut(s) 727
GluI GCNGC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 905
HaeIII GGCC 1 cut(s) 523
HgaI GACGC 2 cut(s) 169, 760
HhaI GCGC 1 cut(s) 728
Hin1II CATG 5 cut(s) 43, 208, 473, 479, 871
Hin6I GCGC 1 cut(s) 726
HinP1I GCGC 1 cut(s) 726
HincII GTYRAC 2 cut(s) 274, 718
HindII GTYRAC 2 cut(s) 274, 718
HindIII AAGCTT 2 cut(s) 304, 817
HinfI GANTC 4 cut(s) 278, 359, 719, 948
HphI GGTGA 3 cut(s) 291, 431, 593
Hpy166II GTNNAC 4 cut(s) 159, 274, 718, 784
Hpy188I TCNGA 6 cut(s) 69, 104, 118, 253, 744, 973
Hpy188III TCNNGA 3 cut(s) 559, 761, 839
Hpy8I GTNNAC 4 cut(s) 159, 274, 718, 784
Hpy99I CGWCG 2 cut(s) 24, 278
HpyAV CCTTC 2 cut(s) 578, 1063
HpyCH4III ACNGT 5 cut(s) 24, 156, 397, 631, 685
HpyCH4IV ACGT 2 cut(s) 350, 517
HpyCH4V TGCA 4 cut(s) 82, 168, 356, 1006
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 1 cut(s) 115
HpySE526I ACGT 2 cut(s) 350, 517
Hsp92II CATG 5 cut(s) 43, 208, 473, 479, 871
HspAI GCGC 1 cut(s) 726
Kzo9I GATC 6 cut(s) 27, 64, 148, 529, 549, 757
LmnI GCTCC 2 cut(s) 769, 995
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 3 cut(s) 328, 778, 1058
MaeII ACGT 2 cut(s) 350, 517
MaeIII GTNAC 4 cut(s) 176, 297, 397, 427
MalI GATC 6 cut(s) 29, 66, 150, 531, 551, 759
MbiI CCGCTC 1 cut(s) 694
MboI GATC 6 cut(s) 27, 64, 148, 529, 549, 757
MboII GAAGA 2 cut(s) 449, 931
MflI RGATCY 1 cut(s) 549
MluCI AATT 9 cut(s) 504, 645, 662, 764, 834, 903, 979, 1012, 1066
MlyI GAGTC 2 cut(s) 353, 713
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 6 cut(s) 124, 235, 415, 443, 634, 1043
Mph1103I ATGCAT 1 cut(s) 84
MseI TTAA 4 cut(s) 705, 815, 822, 890
MslI CAYNNNNRTG 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 412
MvaI CCWGG 1 cut(s) 412
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeII GATC 6 cut(s) 27, 64, 148, 529, 549, 757
NlaIII CATG 5 cut(s) 43, 208, 473, 479, 871
NlaIV GGNNCC 3 cut(s) 106, 771, 997
NmuCI GTSAC 1 cut(s) 297
NsiI ATGCAT 1 cut(s) 84
NspI RCATGY 2 cut(s) 43, 479
PciI ACATGT 2 cut(s) 39, 475
PfeI GAWTC 2 cut(s) 278, 948
PfoI TCCNGGA 1 cut(s) 410
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 2 cut(s) 353, 713
PpsI GAGTC 2 cut(s) 353, 713
PscI ACATGT 2 cut(s) 39, 475
Psp6I CCWGG 1 cut(s) 410
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 3 cut(s) 106, 771, 997
PspPI GGNCC 1 cut(s) 521
PstI CTGCAG 1 cut(s) 1008
PsuI RGATCY 1 cut(s) 549
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 474
SalI GTCGAC 2 cut(s) 272, 716
SaqAI TTAA 4 cut(s) 705, 815, 822, 890
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 6 cut(s) 27, 64, 148, 529, 549, 757
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 2 cut(s) 353, 713
ScrFI CCNGG 1 cut(s) 412
SetI ASST 8 cut(s) 308, 353, 404, 421, 426, 520, 821, 1035
SfaNI GCATC 3 cut(s) 328, 778, 1058
SfcI CTRYAG 2 cut(s) 372, 1004
SmiMI CAYNNNNRTG 1 cut(s) 474
Sse9I AATT 9 cut(s) 504, 645, 662, 764, 834, 903, 979, 1012, 1066
SsiI CCGC 2 cut(s) 110, 692
StyD4I CCNGG 1 cut(s) 410
TaaI ACNGT 5 cut(s) 24, 156, 397, 631, 685
TaiI ACGT 2 cut(s) 353, 520
TaqI TCGA 9 cut(s) 19, 210, 273, 290, 362, 435, 717, 827, 1035
TasI AATT 9 cut(s) 504, 645, 662, 764, 834, 903, 979, 1012, 1066
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 278, 948
Tru1I TTAA 4 cut(s) 705, 815, 822, 890
Tru9I TTAA 4 cut(s) 705, 815, 822, 890
TscAI CASTG 1 cut(s) 690
TseFI GTSAC 1 cut(s) 297
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 297
TspDTI ATGAA 6 cut(s) 486, 507, 675, 851, 856, 898
TspRI CASTG 1 cut(s) 690
XapI RAATTY 5 cut(s) 645, 662, 903, 979, 1012
XceI RCATGY 2 cut(s) 43, 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XmiI GTMKAC 3 cut(s) 273, 717, 783
Zsp2I ATGCAT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.