Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000230

Physical Location & Seq

Genomic Coordinates Reverse (-)

74433994 .. 74435876

Gene Structure 1883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0629700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGGCAATTTTTTATTCTCACCATGCGGTGCAAGGACCGCAGCTCAACCTCAGAGGCTCTTGGAAGGAGGACAAGCTTCCCATCCGATTGAAGTTCTACAAGTCAAGCAAATGGCGGCATCGTGTGAGAAGCGATCCAGTTGTTTTTGAAAGGTGTACTAAACTAGCGGAAAGAGATATTTGGGTAAAGTTTTCTCATTTCAAGCAGCACTTATCCAACAACTACGACAGTAACAGGGAGTATGGAGCGCTCATCACCGGGTATCTGTCGAGCATGGGTGTGCCGCAAGATGAACATCCTGCTATTGTTCACAAGCTATTCCGGGTGGTTGAGGCGGCCGTCAACCCCGAAATCCCTGTTATAGTGTGTGTGTTTCACAACACTCACCGCGTCGTCGGTGGTGATGGACATGGACATGGACATGAACCATGTATGCCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0010310 GO:0010337 GO:0010565 GO:0010817 GO:0016787 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0032350 GO:0042742 GO:0043170 GO:0043207 GO:0044238 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051704 GO:0051707 GO:0062012 GO:0065007 GO:0065008 GO:0070001 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

148

Amino Acids

17.06

Weight (kDa)

9.05

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica	MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica	Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis	pycom12g22170
rosa_chinensis	RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata	RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora	Rmu_sc0034928.1_g000007
rosa_roxburghii	Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa	Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha	Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana	Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	393
AciI	CCGC	7 cut(s)	29, 41, 118, 170, 287, 338, 391
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	339
AfaI	GTAC	1 cut(s)	160
AfeI	AGCGCT	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	94, 152, 205
AluBI	AGCT	3 cut(s)	46, 79, 319
AluI	AGCT	3 cut(s)	46, 79, 319
AlwI	GGATC	1 cut(s)	131
Aor51HI	AGCGCT	1 cut(s)	252
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	43, 208
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	2 cut(s)	262, 326
AsuHPI	GGTGA	4 cut(s)	14, 250, 380, 416
AvaII	GGWCC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	55, 220
BccI	CCATC	2 cut(s)	92, 401
BceAI	ACGGC	1 cut(s)	326
BcnI	CCSGG	2 cut(s)	262, 326
BfaI	CTAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	254
BisI	GCNGC	5 cut(s)	44, 119, 209, 287, 339
BlsI	GCNGC	5 cut(s)	45, 120, 210, 288, 340
Bme1390I	CCNGG	2 cut(s)	262, 326
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmrFI	CCNGG	2 cut(s)	262, 326
BmsI	GCATC	1 cut(s)	130
BpuMI	CCSGG	2 cut(s)	262, 326
BsaBI	GATNNNNATC	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	297
BseGI	GGATG	2 cut(s)	84, 298
BseJI	GATNNNNATC	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	140
BseX3I	CGGCCG	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	55, 220
Bsh1236I	CGCG	1 cut(s)	393
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	261, 325
BsnI	GGCC	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	7 cut(s)	29, 41, 118, 170, 287, 338, 391
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	393
BspPI	GGATC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	140
BssMI	GATC	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	84, 298
BstFNI	CGCG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	260, 324
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	55, 220
BstZI	CGGCCG	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	84, 298
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	6 cut(s)	26, 277, 413, 419, 425, 432
CviJI	RGCY	5 cut(s)	46, 60, 79, 319, 341
CviKI_1	RGCY	5 cut(s)	46, 60, 79, 319, 341
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	339
EagI	CGGCCG	1 cut(s)	339
EclXI	CGGCCG	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	38
Eco47III	AGCGCT	1 cut(s)	252
Eco52I	CGGCCG	1 cut(s)	339
FaeI	CATG	6 cut(s)	29, 280, 416, 422, 428, 435
FaiI	YATR	9 cut(s)	27, 246, 278, 365, 414, 420, 426, 433, 437
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	6 cut(s)	25, 276, 412, 418, 424, 431
Fnu4HI	GCNGC	5 cut(s)	44, 119, 209, 287, 339
FokI	GGATG	2 cut(s)	71, 285
Fsp4HI	GCNGC	5 cut(s)	44, 119, 209, 287, 339
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	5 cut(s)	44, 119, 209, 287, 339
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	2 cut(s)	261, 325
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	6 cut(s)	29, 280, 416, 422, 428, 435
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	77
HpaII	CCGG	2 cut(s)	261, 325
HphI	GGTGA	4 cut(s)	14, 250, 380, 416
Hpy166II	GTNNAC	3 cut(s)	159, 313, 346
Hpy188I	TCNGA	2 cut(s)	56, 89
Hpy8I	GTNNAC	3 cut(s)	159, 313, 346
Hpy99I	CGWCG	2 cut(s)	398, 401
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	6 cut(s)	29, 280, 416, 422, 428, 435
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	6 cut(s)	153, 223, 274, 315, 338, 372
Lsp1109I	GCAGC	2 cut(s)	55, 220
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MluCI	AATT	2 cut(s)	9, 442
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	4 cut(s)	50, 62, 64, 328
MslI	CAYNNNNRTG	3 cut(s)	281, 417, 423
MspI	CCGG	2 cut(s)	261, 325
MspR9I	CCNGG	2 cut(s)	262, 326
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	40
NciI	CCSGG	2 cut(s)	262, 326
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	6 cut(s)	29, 280, 416, 422, 428, 435
PkrI	GCNGC	5 cut(s)	45, 120, 210, 288, 340
PspPI	GGNCC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	3 cut(s)	281, 417, 423
SatI	GCNGC	5 cut(s)	44, 119, 209, 287, 339
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	262, 326
SetI	ASST	5 cut(s)	48, 54, 81, 158, 321
SfaNI	GCATC	1 cut(s)	130
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	3 cut(s)	281, 417, 423
Sse9I	AATT	2 cut(s)	9, 442
SsiI	CCGC	7 cut(s)	29, 41, 118, 170, 287, 338, 391
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	260, 324
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	272
TasI	AATT	2 cut(s)	9, 442
TatI	WGTACW	1 cut(s)	158
TauI	GCSGC	3 cut(s)	121, 289, 341
TseI	GCWGC	2 cut(s)	43, 208
TspDTI	ATGAA	2 cut(s)	309, 441
VpaK11BI	GGWCC	1 cut(s)	38
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.