Rh3BG030800

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000230
Physical Location & Seq
Reverse (-)
2020320 .. 2020856
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG030800.1

Sequence Viewer

Length: 537 bp
ATGAGCTTTGGGAAGGGCAGTGAAGTGTTGGGTAATGGTGTTGTGACAGTACCGTTGGTGCCGAAAGACGACACTTTTTATTTTGTGACGGTGGAAGGATTTAGCGTCGGAGACAAGTTTTTGCCTTTCGATTCATCAGGGAAAGTTGGAAAGGGCAACATTTTCCTCGACTCAGGAACACCGCCGACGTATATACCGACGGATTTATATGATCGGTTGGTAGCTGAACTGAGGAAGCAGATTCCGATGGCGCCCATTGAAGATGACCCGGATTTGGGGAATCAGCTGTGTTACAGGACCAAGACTAATCTCAAGGGACCAATATTGACGGTGCATTTTGAGGGGGGTGCTAATATAAAGTTGACACCAACACAAACATTTATTCCACCAAAAGATGAGGTTTTCTGCTTTGCAATGATAGGTGATAACAGTGGTGTTAACATTTATGGAAACTTTGCTCAGACAAATTTCTTGATTGGTATTGACCTTGAAACAAAGGTGGTTTCTTTCAAGCCAAATGATTGCACAAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

178

Amino Acids

19.42

Weight (kDa)

4.77

Isoelectric Point (pI)

25.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 27 - 171 3.4e-25 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 58, 250
AciI CCGC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 466
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 2 cut(s) 274, 275
AgsI TTSAA 3 cut(s) 260, 491, 511
AluBI AGCT 3 cut(s) 6, 224, 286
AluI AGCT 3 cut(s) 6, 224, 286
Alw26I GTCTC 1 cut(s) 105
ApoI RAATTY 1 cut(s) 466
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 2 cut(s) 297, 317
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 434
AvaII GGWCC 2 cut(s) 297, 317
BanI GGYRCC 2 cut(s) 58, 250
BccI CCATC 1 cut(s) 241
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 2 cut(s) 297, 317
BmgT120I GGNCC 2 cut(s) 297, 317
BmiI GGNNCC 3 cut(s) 60, 252, 318
BmrFI CCNGG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 275
Bse3DI GCAATG 1 cut(s) 420
BseLI CCNNNNNNNGG 2 cut(s) 274, 275
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 3 cut(s) 186, 221, 473
BshNI GGYRCC 2 cut(s) 58, 250
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 274, 275
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 330
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 182
BspCNI CTCAG 3 cut(s) 185, 222, 472
BspLI GGNNCC 3 cut(s) 60, 252, 318
BspT107I GGYRCC 2 cut(s) 58, 250
BsrDI GCAATG 1 cut(s) 420
BssMI GATC 1 cut(s) 211
BssNI GRCGYC 1 cut(s) 251
Bst4CI ACNGT 5 cut(s) 49, 54, 91, 331, 431
BstACI GRCGYC 1 cut(s) 251
BstDEI CTNAG 3 cut(s) 172, 230, 459
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 25, 436
CfoI GCGC 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 297, 317
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 50
CviJI RGCY 4 cut(s) 6, 224, 286, 514
CviKI_1 RGCY 4 cut(s) 6, 224, 286, 514
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 3 cut(s) 172, 230, 459
DinI GGCGCC 1 cut(s) 252
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eco47I GGWCC 2 cut(s) 297, 317
EgeI GGCGCC 1 cut(s) 252
EheI GGCGCC 1 cut(s) 252
FaiI YATR 6 cut(s) 192, 194, 208, 210, 356, 447
FaqI GGGAC 1 cut(s) 330
GlaI GCGC 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 254
HapII CCGG 1 cut(s) 269
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 253
Hin1I GRCGYC 1 cut(s) 251
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 2 cut(s) 363, 439
HindII GTYRAC 2 cut(s) 363, 439
HinfI GANTC 4 cut(s) 131, 170, 241, 280
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 1 cut(s) 269
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 2 cut(s) 363, 439
Hpy188I TCNGA 3 cut(s) 110, 246, 462
Hpy188III TCNNGA 2 cut(s) 174, 472
Hpy8I GTNNAC 2 cut(s) 363, 439
Hpy99I CGWCG 3 cut(s) 110, 190, 202
HpyAV CCTTC 2 cut(s) 7, 89
HpyCH4III ACNGT 5 cut(s) 49, 54, 91, 331, 431
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 3 cut(s) 334, 413, 525
HpyF3I CTNAG 3 cut(s) 172, 230, 459
HpySE526I ACGT 1 cut(s) 188
Hsp92I GRCGYC 1 cut(s) 251
HspAI GCGC 1 cut(s) 251
KasI GGCGCC 1 cut(s) 250
KspAI GTTAAC 1 cut(s) 439
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 4 cut(s) 123, 159, 280, 282
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 3 cut(s) 43, 85, 290
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 272
MluCI AATT 1 cut(s) 466
Mly113I GGCGCC 1 cut(s) 251
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 2 cut(s) 88, 127
MnlI CCTC 4 cut(s) 176, 225, 334, 391
MseI TTAA 2 cut(s) 438, 535
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 269
NarI GGCGCC 1 cut(s) 251
NciI CCSGG 1 cut(s) 269
NdeII GATC 1 cut(s) 211
NlaIV GGNNCC 3 cut(s) 60, 252, 318
NmuCI GTSAC 2 cut(s) 43, 85
PcsI WCGNNNNNNNCGW 1 cut(s) 194
PfeI GAWTC 3 cut(s) 131, 241, 280
PleI GAGTC 1 cut(s) 164
PluTI GGCGCC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 164
PspN4I GGNNCC 3 cut(s) 60, 252, 318
PspPI GGNCC 2 cut(s) 297, 317
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SaqAI TTAA 2 cut(s) 438, 535
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 2 cut(s) 297, 317
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 269
SetI ASST 8 cut(s) 8, 191, 226, 288, 402, 424, 489, 501
SfoI GGCGCC 1 cut(s) 252
SinI GGWCC 2 cut(s) 297, 317
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 1 cut(s) 466
SsiI CCGC 1 cut(s) 182
SspDI GGCGCC 1 cut(s) 250
SspI AATATT 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 5 cut(s) 49, 54, 91, 331, 431
TaiI ACGT 1 cut(s) 191
TaqI TCGA 2 cut(s) 129, 168
TasI AATT 1 cut(s) 466
TfiI GAWTC 3 cut(s) 131, 241, 280
Tru1I TTAA 2 cut(s) 438, 535
Tru9I TTAA 2 cut(s) 438, 535
TscAI CASTG 2 cut(s) 25, 436
TseFI GTSAC 2 cut(s) 43, 85
Tsp45I GTSAC 2 cut(s) 43, 85
TspDTI ATGAA 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 2 cut(s) 25, 436
VpaK11BI GGWCC 2 cut(s) 297, 317
XapI RAATTY 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.