Prupe.6G344300_v2.0.a1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000230
Physical Location & Seq
Reverse (-)
29604594 .. 29606021
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G344300.1

Sequence Viewer

Length: 1428 bp
ATGAGTATGATTTTGATCATCATTTATCTGATGGTATGTCATAATTCAGCTACAGCTACAGCCTCAAGCAGTTCAAATCTTAATAATGGTGGGTTCAGTGTCAAACTAATCCGCAGAAACTCCCTAAAACCACCACTTTATAATCACAATCATAAAGCTTATCGACGTCTCATGGGGTCATCCGACGACCAAACTACCCCACAATCGGAAATAAGGCGTGACAAGGAGGATGGTGAGGGTGCACAACTTATGAAGCTCTCAATTGGAAGTCCACCCTATGAGATTTACGCCGTGGCTGATACCGGCAGCACGCTATTATGGACACAGTGTGAACCATGTCCAAATTGCTACAAGCAGAAAAATCCCAAGTTTGATCCAAAAAAGTCCTCATCATACGGTACCCTGCCATGTTCTGCAAAAGAATGCACTTATGCTAATGGCACTGGCTATACCTCCTGCTCAACTGATGATCAAAAGGTTTGCAATTACAATTACACTTACATGGATGATTCACTAACACAAGGGGTAATGGCCAAAGAGACAATTACATTTGGATCCAGCTCGGGGAAGCCAGTTTCGTTCAAAAATGTTGTGTTTGGTTGTGGACATAACAATACAGGGGAAACTTTTGGTAAAAATGAAATGGGAATAGTAGGGCTTGGACTTGGGAACTTATCAATTATTTCTCAAATTTCTCCTTATGTTGGAGGCAGAAAATTCTCACATTGTCTCGTGCCGTTCGATCCGGATCATCCCAATGATGCAAGCATCATGAGTTTTGGGAAGGGGAGTGAGGTTTCAGGTGAAGGTGTGGTCTCAACACCTTTGATCACCAAAGATGGCAAGACCCAATATTTTGTTACAGTGGAGGGAATTACTGTTGGAGATAAGTTTGTGCCTTTTAACTCATCATGGTCTGTTTCAAAAGGGAACATGTTTCTTGACTCAGGAACACAAGTGACAATGTTGCCACAAGATTTTTATGACAGATTGGTGACAGAAGTAAAGAAGAAGATGGAACCGTCGTCATTGAAACCGACCGAAGTAAATGACCCGTCTGGAACTCTGCTTTGCTACAATGCCACAACTAATCCCAAAGCACCAATGATGACGGTGCATTTTGATGGCGGTGCTAAAGTGCAGCTAGCACCAGCACAAACGTTTTATCAAAACAAACAAGATAAGTTGTTCTGTTTTGGAACGCTCAACTCAAGCAATCCATTGAGTGAGGGTGTTGGTCTTTTTGGAAGCTATGCTCAGTCAAATTTCTTGATTGGCTTCGACCTCGAGAAAATGTTGGTCTCCTTCAAGGCAACTGATTGCAGAAAGCCTAGCACTCGTACTGCTAATGATGCTTCTGCCACTCCCTTTTCGTATTTCTTCAACTACCTTGTCAGTTTTATTTTGGTTGCAATTTTGTACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

476

Amino Acids

51.89

Weight (kDa)

7.85

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AatII GACGTC 1 cut(s) 169
Acc65I GGTACC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 398
AccIII TCCGGA 1 cut(s) 745
AciI CCGC 2 cut(s) 112, 1128
AclI AACGTT 1 cut(s) 1160
AclWI GGATC 5 cut(s) 368, 549, 562, 737, 756
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 3 cut(s) 690, 716, 1264
AcyI GRCGYC 1 cut(s) 166
AdeI CACNNNGTG 1 cut(s) 329
AfaI GTAC 3 cut(s) 400, 1342, 1421
AfiI CCNNNNNNNGG 3 cut(s) 205, 564, 704
AflIII ACRYGT 1 cut(s) 933
AgsI TTSAA 6 cut(s) 75, 583, 924, 1033, 1309, 1384
AluBI AGCT 7 cut(s) 50, 56, 158, 256, 561, 1144, 1251
AluI AGCT 7 cut(s) 50, 56, 158, 256, 561, 1144, 1251
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 5 cut(s) 173, 533, 734, 820, 1306
Alw44I GTGCAC 1 cut(s) 240
AlwI GGATC 5 cut(s) 368, 549, 562, 737, 756
Ama87I CYCGRG 2 cut(s) 562, 1286
Aor13HI TCCGGA 1 cut(s) 745
AoxI GGCC 1 cut(s) 531
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 306, 1141
ApoI RAATTY 3 cut(s) 690, 716, 1264
Asp718I GGTACC 1 cut(s) 398
AsuHPI GGTGA 4 cut(s) 245, 815, 823, 1006
AsuNHI GCTAGC 1 cut(s) 1144
AvaI CYCGRG 2 cut(s) 562, 1286
BaeGI GKGCMC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 533
BamHI GGATCC 1 cut(s) 554
BanI GGYRCC 1 cut(s) 398
BauI CACGAG 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 2 cut(s) 318, 1153
BccI CCATC 5 cut(s) 25, 224, 833, 1009, 1118
BceAI ACGGC 2 cut(s) 275, 721
BclI TGATCA 3 cut(s) 15, 469, 828
BcoDI GTCTC 5 cut(s) 173, 533, 734, 820, 1306
BfaI CTAG 3 cut(s) 1145, 1332, 1426
BfmI CTRYAG 2 cut(s) 51, 57
BisI GCNGC 2 cut(s) 307, 1142
BlsI GCNGC 2 cut(s) 308, 1143
BmeT110I CYCGRG 2 cut(s) 562, 1286
BmiI GGNNCC 3 cut(s) 400, 556, 1020
BmsI GCATC 3 cut(s) 751, 777, 1342
BmtI GCTAGC 1 cut(s) 1148
BpuEI CTTGAG 2 cut(s) 49, 1195
BsaBI GATNNNNATC 2 cut(s) 14, 747
BsaHI GRCGYC 1 cut(s) 166
BsaI GGTCTC 2 cut(s) 820, 1306
BsaJI CCNNGG 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 745
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 564, 704
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 2 cut(s) 448, 572
Bse8I GATNNNNATC 2 cut(s) 14, 747
BseAI TCCGGA 1 cut(s) 745
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 4 cut(s) 179, 235, 511, 751
BseJI GATNNNNATC 2 cut(s) 14, 747
BseLI CCNNNNNNNGG 3 cut(s) 205, 564, 704
BseMII CTCAG 2 cut(s) 960, 1271
BseNI ACTGG 2 cut(s) 448, 572
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 2 cut(s) 318, 1153
BsgI GTGCAG 1 cut(s) 1160
Bsh1285I CGRYCG 1 cut(s) 1041
BshFI GGCC 1 cut(s) 533
BshNI GGYRCC 1 cut(s) 398
BsiEI CGRYCG 1 cut(s) 1041
BsiHKAI GWGCWC 1 cut(s) 244
BsiHKCI CYCGRG 2 cut(s) 562, 1286
BsiSI CCGG 2 cut(s) 303, 746
BslI CCNNNNNNNGG 3 cut(s) 205, 564, 704
BsmAI GTCTC 5 cut(s) 173, 533, 734, 820, 1306
BsmBI CGTCTC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 1 cut(s) 533
Bso31I GGTCTC 2 cut(s) 820, 1306
BsoBI CYCGRG 2 cut(s) 562, 1286
Bsp1286I GDGCHC 1 cut(s) 244
Bsp13I TCCGGA 1 cut(s) 745
Bsp143I GATC 7 cut(s) 15, 373, 469, 554, 742, 748, 828
BspACI CCGC 2 cut(s) 112, 1128
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 2 cut(s) 959, 1270
BspEI TCCGGA 1 cut(s) 745
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 3 cut(s) 400, 556, 1020
BspOI GCTAGC 1 cut(s) 1148
BspPI GGATC 5 cut(s) 368, 549, 562, 737, 756
BspT107I GGYRCC 1 cut(s) 398
BspTNI GGTCTC 2 cut(s) 820, 1306
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 2 cut(s) 448, 572
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 7 cut(s) 15, 373, 469, 554, 742, 748, 828
BssNI GRCGYC 1 cut(s) 166
BssSI CACGAG 1 cut(s) 731
Bst2BI CACGAG 1 cut(s) 731
Bst4CI ACNGT 6 cut(s) 327, 398, 865, 880, 1023, 1114
BstACI GRCGYC 1 cut(s) 166
BstC8I GCNNGC 3 cut(s) 311, 766, 1146
BstDEI CTNAG 2 cut(s) 946, 1257
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 4 cut(s) 179, 235, 511, 751
BstKTI GATC 7 cut(s) 18, 376, 472, 557, 745, 751, 831
BstMAI GTCTC 5 cut(s) 173, 533, 734, 820, 1306
BstMBI GATC 7 cut(s) 15, 373, 469, 554, 742, 748, 828
BstMCI CGRYCG 1 cut(s) 1041
BstMWI GCNNNNNNNGC 1 cut(s) 1352
BstNSI RCATGY 1 cut(s) 937
BstSFI CTRYAG 2 cut(s) 51, 57
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 318, 1153
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BsuRI GGCC 1 cut(s) 533
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 4 cut(s) 179, 235, 511, 751
BtsIMutI CAGTG 4 cut(s) 103, 332, 441, 870
Cac8I GCNNGC 3 cut(s) 311, 766, 1146
CciI TCATGA 1 cut(s) 771
Cfr10I RCCGGY 1 cut(s) 302
Csp6I GTAC 3 cut(s) 399, 1341, 1420
CviAII CATG 7 cut(s) 172, 336, 408, 502, 772, 912, 934
CviQI GTAC 3 cut(s) 399, 1341, 1420
DdeI CTNAG 2 cut(s) 946, 1257
DpnI GATC 7 cut(s) 17, 375, 471, 556, 744, 750, 830
DpnII GATC 7 cut(s) 15, 373, 469, 554, 742, 748, 828
DraIII CACNNNGTG 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 531
Eco31I GGTCTC 2 cut(s) 820, 1306
Eco88I CYCGRG 2 cut(s) 562, 1286
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 7 cut(s) 175, 339, 411, 505, 775, 915, 937
FatI CATG 7 cut(s) 171, 335, 407, 501, 771, 911, 933
FbaI TGATCA 3 cut(s) 15, 469, 828
Fnu4HI GCNGC 2 cut(s) 307, 1142
FokI GGATG 4 cut(s) 166, 242, 518, 738
Fsp4HI GCNGC 2 cut(s) 307, 1142
FspBI CTAG 3 cut(s) 1145, 1332, 1426
GluI GCNGC 2 cut(s) 307, 1142
HaeIII GGCC 1 cut(s) 533
HapII CCGG 2 cut(s) 303, 746
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 7 cut(s) 175, 339, 411, 505, 775, 915, 937
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 2 cut(s) 509, 944
HpaII CCGG 2 cut(s) 303, 746
HphI GGTGA 4 cut(s) 245, 815, 823, 1006
Hpy166II GTNNAC 4 cut(s) 242, 272, 332, 605
Hpy188I TCNGA 3 cut(s) 30, 184, 208
Hpy188III TCNNGA 7 cut(s) 746, 772, 941, 948, 1059, 1270, 1288
Hpy8I GTNNAC 4 cut(s) 242, 272, 332, 605
Hpy99I CGWCG 3 cut(s) 168, 188, 1027
HpyAV CCTTC 3 cut(s) 778, 800, 1315
HpyCH4III ACNGT 6 cut(s) 327, 398, 865, 880, 1023, 1114
HpyCH4IV ACGT 2 cut(s) 166, 1160
HpyCH4V TGCA 9 cut(s) 242, 416, 426, 483, 764, 1117, 1141, 1323, 1412
HpyF10VI GCNNNNNNNGC 1 cut(s) 1352
HpyF3I CTNAG 2 cut(s) 946, 1257
HpySE526I ACGT 2 cut(s) 166, 1160
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 7 cut(s) 175, 339, 411, 505, 775, 915, 937
Kpn2I TCCGGA 1 cut(s) 745
KpnI GGTACC 1 cut(s) 402
Ksp22I TGATCA 3 cut(s) 15, 469, 828
Kzo9I GATC 7 cut(s) 15, 373, 469, 554, 742, 748, 828
Lsp1109I GCAGC 2 cut(s) 318, 1153
LweI GCATC 3 cut(s) 751, 777, 1342
MaeI CTAG 3 cut(s) 1145, 1332, 1426
MaeII ACGT 2 cut(s) 166, 1160
MaeIII GTNAC 4 cut(s) 218, 859, 958, 994
MalI GATC 7 cut(s) 17, 375, 471, 556, 744, 750, 830
MboI GATC 7 cut(s) 15, 373, 469, 554, 742, 748, 828
MboII GAAGA 3 cut(s) 1021, 1024, 1372
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 1 cut(s) 244
MlsI TGGCCA 1 cut(s) 533
MluNI TGGCCA 1 cut(s) 533
MlyI GAGTC 1 cut(s) 938
MmeI TCCRAC 3 cut(s) 207, 685, 862
Mox20I TGGCCA 1 cut(s) 533
MroI TCCGGA 1 cut(s) 745
MscI TGGCCA 1 cut(s) 533
MseI TTAA 2 cut(s) 81, 903
MslI CAYNNNNRTG 3 cut(s) 500, 756, 1122
Msp20I TGGCCA 1 cut(s) 533
MspI CCGG 2 cut(s) 303, 746
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 1352
NdeII GATC 7 cut(s) 15, 373, 469, 554, 742, 748, 828
NheI GCTAGC 1 cut(s) 1144
NlaIII CATG 7 cut(s) 175, 339, 411, 505, 775, 915, 937
NlaIV GGNNCC 3 cut(s) 400, 556, 1020
NmuCI GTSAC 3 cut(s) 218, 958, 994
NspI RCATGY 1 cut(s) 937
PaeR7I CTCGAG 1 cut(s) 1286
PagI TCATGA 1 cut(s) 771
PciI ACATGT 1 cut(s) 933
PcsI WCGNNNNNNNCGW 1 cut(s) 738
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 1 cut(s) 509
PkrI GCNGC 2 cut(s) 308, 1143
PleI GAGTC 1 cut(s) 938
PpsI GAGTC 1 cut(s) 938
PscI ACATGT 1 cut(s) 933
PsiI TTATAA 1 cut(s) 141
Psp1406I AACGTT 1 cut(s) 1160
PspN4I GGNNCC 3 cut(s) 400, 556, 1020
PsuI RGATCY 1 cut(s) 554
RsaI GTAC 3 cut(s) 400, 1342, 1421
RsaNI GTAC 3 cut(s) 399, 1341, 1420
RseI CAYNNNNRTG 3 cut(s) 500, 756, 1122
SaqAI TTAA 2 cut(s) 81, 903
SatI GCNGC 2 cut(s) 307, 1142
Sau3AI GATC 7 cut(s) 15, 373, 469, 554, 742, 748, 828
SchI GAGTC 1 cut(s) 938
SduI GDGCHC 1 cut(s) 244
SfaNI GCATC 3 cut(s) 751, 777, 1342
SfcI CTRYAG 2 cut(s) 51, 57
Sfr274I CTCGAG 1 cut(s) 1286
SlaI CTCGAG 1 cut(s) 1286
SmiMI CAYNNNNRTG 3 cut(s) 500, 756, 1122
SmlI CTYRAG 3 cut(s) 64, 1210, 1286
SmoI CTYRAG 3 cut(s) 64, 1210, 1286
SsiI CCGC 2 cut(s) 112, 1128
SspI AATATT 1 cut(s) 854
SspMI CTAG 3 cut(s) 1145, 1332, 1426
TaaI ACNGT 6 cut(s) 327, 398, 865, 880, 1023, 1114
TaiI ACGT 2 cut(s) 169, 1163
TaqI TCGA 4 cut(s) 163, 741, 1281, 1287
TaqII GACCGA 1 cut(s) 1055
TatI WGTACW 1 cut(s) 1419
TfiI GAWTC 1 cut(s) 509
Tru1I TTAA 2 cut(s) 81, 903
Tru9I TTAA 2 cut(s) 81, 903
TscAI CASTG 4 cut(s) 103, 332, 448, 870
TseFI GTSAC 3 cut(s) 218, 958, 994
TseI GCWGC 2 cut(s) 306, 1141
Tsp45I GTSAC 3 cut(s) 218, 958, 994
TspDTI ATGAA 2 cut(s) 266, 654
TspRI CASTG 4 cut(s) 103, 332, 448, 870
VneI GTGCAC 1 cut(s) 240
XapI RAATTY 3 cut(s) 690, 716, 1264
XceI RCATGY 1 cut(s) 937
XhoI CTCGAG 1 cut(s) 1286
XspI CTAG 3 cut(s) 1145, 1332, 1426
ZraI GACGTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.