Rh3CG241900

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000230
Physical Location & Seq
Forward (+)
23162215 .. 23163198
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG241900.1

Sequence Viewer

Length: 984 bp
ATGTTCGACCCGAGAAAATCCTCAACATATACGAACATTACTTGTTCTGCAAGGGAGTGTGGACTTGTCGATGATCAAAAACCACCAGGCCAATCACCGGAGTTTTGTAAAAAATTTCCTACAAGAAGGTGTACTTACCGTGTCGAGTATGAAGACACGTCATCTTCTGAAGGTGTATTGGCAAAAGAAACAATTGCCTTGACATCCAGGACAGGTAAGGTTGTAACCCTAAAAGATATTGTCATTGGGTGTGCACATTTGAACAATGAACATATTTCAACTGGAAATGAAATGGGAGTACTTGGGCTTGGAAATGGTCCTGTGTCATTTGTTTCTCAAATTGCTCCCTATGTTGGAGGGAACAGATTTTCTCATTGCTTGGTGCCTTTAGATACTGATCCCAAAATTGAAAGCAAGATCAATTTCGGAAATGGGAGTGAAGTTTTGGGTGAAGGGGTTGTCTCAACACCATTGGTTAATATAAGTATAGCCCCATCTAACTATTTTGTAACGGTAGAAGGAGTTACCATTGGAAATGAATTTGTTCCGTTCAACTCAACAGTGACACAGCTTAATAAATTACTTAACATGATGGTCGACTCGGGCGCAACTTTTGCACAAGTACCTCAAGATATTTTTGATCGGATGGTAACTCAGCTGAAGAAGACGCTTGATCCGAAATTGGAGTCATTTATTAATAATGACACGGAAGATAATTCAAGTTTTTTGTGTCTCAACTCGACGACAATTCCAAAAGAACCAAAACTGACTTTTCATTTCGAGGGTGGTGGCAAACTTCAGTTAATGGCAGAACAATTATTCAAAATAAACGAGAATAGAGTCTGCTTTGGATTCGTGCTTCACCCTGGCCAACACATGCCTTTCGGTATTTTTGGAGCCATTTTGCAGGGAAATTTGTTGGTTGGTTTTGACCTGGATAGAAATGTGGCAATGTGGCATCCTTCAAGCCAACTAATTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

327

Amino Acids

35.81

Weight (kDa)

5.54

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 1 - 144 1.4e-30 Xylanase inhibitor N-terminal
Asp PF00026 45 - 315 1.1e-10 Eukaryotic aspartyl protease
TAXi_C PF14541 167 - 315 1e-18 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 382
AccI GTMKAC 1 cut(s) 597
AclWI GGATC 2 cut(s) 392, 668
AcoI YGGCCR 1 cut(s) 868
AcsI RAATTY 3 cut(s) 113, 539, 913
AcuI CTGAAG 3 cut(s) 189, 680, 782
AfaI GTAC 3 cut(s) 133, 300, 624
AfiI CCNNNNNNNGG 2 cut(s) 97, 353
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 7 cut(s) 262, 279, 410, 553, 720, 823, 966
AjiI CACGTC 1 cut(s) 159
AjnI CCWGG 4 cut(s) 85, 206, 865, 933
AluBI AGCT 2 cut(s) 571, 658
AluI AGCT 2 cut(s) 571, 658
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 2 cut(s) 466, 737
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 2 cut(s) 392, 668
Ama87I CYCGRG 2 cut(s) 10, 601
AoxI GGCC 2 cut(s) 88, 868
ApaLI GTGCAC 1 cut(s) 252
ApoI RAATTY 3 cut(s) 113, 539, 913
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AseI ATTAAT 1 cut(s) 696
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 87, 461, 854
AvaI CYCGRG 2 cut(s) 10, 601
AvaII GGWCC 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 256
BalI TGGCCA 1 cut(s) 870
BanI GGYRCC 1 cut(s) 382
BbsI GAAGAC 2 cut(s) 159, 671
Bbv12I GWGCWC 1 cut(s) 256
BccI CCATC 3 cut(s) 502, 586, 640
BciT130I CCWGG 4 cut(s) 87, 208, 867, 935
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 466, 737
BmcAI AGTACT 1 cut(s) 300
Bme1390I CCNGG 4 cut(s) 87, 208, 867, 935
Bme18I GGWCC 1 cut(s) 317
BmeT110I CYCGRG 2 cut(s) 10, 601
BmgBI CACGTC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 2 cut(s) 384, 898
BmrFI CCNGG 4 cut(s) 87, 208, 867, 935
BmsI GCATC 1 cut(s) 967
BpiI GAAGAC 2 cut(s) 159, 671
BpuEI CTTGAG 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 865
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 353
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 2 cut(s) 373, 957
Bse8I GATNNNNATC 1 cut(s) 396
BseBI CCWGG 4 cut(s) 87, 208, 867, 935
BseDI CCNNGG 1 cut(s) 865
BseGI GGATG 3 cut(s) 203, 651, 958
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 2 cut(s) 97, 353
BseMI GCAATG 2 cut(s) 373, 957
BseMII CTCAG 1 cut(s) 668
BseNI ACTGG 1 cut(s) 286
BseSI GKGCMC 1 cut(s) 256
BshFI GGCC 2 cut(s) 90, 870
BshNI GGYRCC 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 2 cut(s) 10, 601
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 97, 353
BsmAI GTCTC 2 cut(s) 466, 737
BsnI GGCC 2 cut(s) 90, 870
BsoBI CYCGRG 2 cut(s) 10, 601
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 5 cut(s) 73, 397, 417, 640, 673
BspANI GGCC 2 cut(s) 90, 870
BspCNI CTCAG 1 cut(s) 667
BspLI GGNNCC 2 cut(s) 384, 898
BspPI GGATC 2 cut(s) 392, 668
BspT107I GGYRCC 1 cut(s) 382
BsrDI GCAATG 2 cut(s) 373, 957
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 865
BssMI GATC 5 cut(s) 73, 397, 417, 640, 673
Bst2UI CCWGG 4 cut(s) 87, 208, 867, 935
Bst4CI ACNGT 3 cut(s) 140, 514, 562
BstAPI GCANNNNNTGC 1 cut(s) 614
BstDEI CTNAG 1 cut(s) 654
BstF5I GGATG 3 cut(s) 203, 651, 958
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 5 cut(s) 76, 400, 420, 643, 676
BstMAI GTCTC 2 cut(s) 466, 737
BstMBI GATC 5 cut(s) 73, 397, 417, 640, 673
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstNI CCWGG 4 cut(s) 87, 208, 867, 935
BstNSI RCATGY 1 cut(s) 880
BstSCI CCNGG 4 cut(s) 85, 206, 865, 933
BstSLI GKGCMC 1 cut(s) 256
BstV2I GAAGAC 2 cut(s) 159, 671
BsuRI GGCC 2 cut(s) 90, 870
BtrI CACGTC 1 cut(s) 159
BtsCI GGATG 3 cut(s) 203, 651, 958
BtsIMutI CAGTG 1 cut(s) 567
CfoI GCGC 1 cut(s) 608
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 1 cut(s) 676
Csp6I GTAC 3 cut(s) 132, 299, 623
CviAII CATG 2 cut(s) 589, 877
CviJI RGCY 8 cut(s) 90, 307, 491, 571, 658, 870, 899, 969
CviKI_1 RGCY 8 cut(s) 90, 307, 491, 571, 658, 870, 899, 969
CviQI GTAC 3 cut(s) 132, 299, 623
DdeI CTNAG 1 cut(s) 654
DpnI GATC 5 cut(s) 75, 399, 419, 642, 675
DpnII GATC 5 cut(s) 73, 397, 417, 640, 673
EaeI YGGCCR 1 cut(s) 868
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 3 cut(s) 189, 680, 782
Eco88I CYCGRG 2 cut(s) 10, 601
EcoRII CCWGG 4 cut(s) 85, 206, 865, 933
FaeI CATG 2 cut(s) 592, 880
FaiI YATR 9 cut(s) 28, 30, 150, 273, 351, 482, 488, 590, 878
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FatI CATG 2 cut(s) 588, 876
FbaI TGATCA 1 cut(s) 73
FblI GTMKAC 1 cut(s) 597
FokI GGATG 3 cut(s) 190, 658, 945
GlaI GCGC 1 cut(s) 607
HaeIII GGCC 2 cut(s) 90, 870
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 676
HhaI GCGC 1 cut(s) 608
Hin1II CATG 2 cut(s) 592, 880
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 4 cut(s) 599, 686, 840, 852
HpaII CCGG 1 cut(s) 98
HphI GGTGA 3 cut(s) 87, 461, 854
Hpy166II GTNNAC 4 cut(s) 62, 132, 254, 598
Hpy188I TCNGA 4 cut(s) 169, 428, 645, 678
Hpy188III TCNNGA 1 cut(s) 629
Hpy8I GTNNAC 4 cut(s) 62, 132, 254, 598
Hpy99I CGWCG 1 cut(s) 745
HpyAV CCTTC 5 cut(s) 120, 164, 446, 512, 972
HpyCH4III ACNGT 3 cut(s) 140, 514, 562
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 4 cut(s) 50, 254, 617, 907
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 1 cut(s) 654
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 2 cut(s) 592, 880
HspAI GCGC 1 cut(s) 606
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 5 cut(s) 73, 397, 417, 640, 673
LmnI GCTCC 2 cut(s) 349, 896
LweI GCATC 1 cut(s) 967
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 5 cut(s) 223, 508, 523, 562, 649
MalI GATC 5 cut(s) 75, 399, 419, 642, 675
MboI GATC 5 cut(s) 73, 397, 417, 640, 673
MboII GAAGA 5 cut(s) 156, 164, 673, 676, 722
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 256
MlsI TGGCCA 1 cut(s) 870
MluNI TGGCCA 1 cut(s) 870
MlyI GAGTC 3 cut(s) 593, 695, 849
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 4 cut(s) 31, 350, 636, 775
Mox20I TGGCCA 1 cut(s) 870
MroXI GAANNNNTTC 1 cut(s) 543
MscI TGGCCA 1 cut(s) 870
MseI TTAA 5 cut(s) 477, 573, 585, 696, 803
Msp20I TGGCCA 1 cut(s) 870
MspA1I CMGCKG 1 cut(s) 658
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 4 cut(s) 87, 208, 867, 935
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 4 cut(s) 87, 208, 867, 935
MwoI GCNNNNNNNGC 1 cut(s) 614
NdeII GATC 5 cut(s) 73, 397, 417, 640, 673
NlaIII CATG 2 cut(s) 592, 880
NlaIV GGNNCC 2 cut(s) 384, 898
NmuCI GTSAC 1 cut(s) 562
NspI RCATGY 1 cut(s) 880
PcsI WCGNNNNNNNCGW 1 cut(s) 674
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 1 cut(s) 852
PfoI TCCNGGA 1 cut(s) 206
PleI GAGTC 3 cut(s) 593, 694, 848
PpsI GAGTC 3 cut(s) 593, 694, 848
PshBI ATTAAT 1 cut(s) 696
Psp6I CCWGG 4 cut(s) 85, 206, 865, 933
PspGI CCWGG 4 cut(s) 85, 206, 865, 933
PspN4I GGNNCC 2 cut(s) 384, 898
PspPI GGNCC 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 658
RsaI GTAC 3 cut(s) 133, 300, 624
RsaNI GTAC 3 cut(s) 132, 299, 623
SalI GTCGAC 1 cut(s) 596
SaqAI TTAA 5 cut(s) 477, 573, 585, 696, 803
Sau3AI GATC 5 cut(s) 73, 397, 417, 640, 673
Sau96I GGNCC 1 cut(s) 317
ScaI AGTACT 1 cut(s) 300
SchI GAGTC 3 cut(s) 593, 695, 849
ScrFI CCNGG 4 cut(s) 87, 208, 867, 935
SduI GDGCHC 1 cut(s) 256
SetI ASST 9 cut(s) 131, 161, 175, 217, 222, 573, 628, 660, 936
SfaNI GCATC 1 cut(s) 967
SinI GGWCC 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 627
SmoI CTYRAG 1 cut(s) 627
StyD4I CCNGG 4 cut(s) 85, 206, 865, 933
TaaI ACNGT 3 cut(s) 140, 514, 562
TaiI ACGT 1 cut(s) 161
TaqI TCGA 6 cut(s) 6, 69, 144, 597, 740, 780
TatI WGTACW 2 cut(s) 131, 298
TfiI GAWTC 1 cut(s) 852
Tru1I TTAA 5 cut(s) 477, 573, 585, 696, 803
Tru9I TTAA 5 cut(s) 477, 573, 585, 696, 803
TscAI CASTG 1 cut(s) 567
TseFI GTSAC 1 cut(s) 562
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 5 cut(s) 165, 282, 303, 552, 764
TspGWI ACGGA 2 cut(s) 537, 722
TspRI CASTG 1 cut(s) 567
VneI GTGCAC 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 317
VspI ATTAAT 1 cut(s) 696
XapI RAATTY 3 cut(s) 113, 539, 913
XceI RCATGY 1 cut(s) 880
XmiI GTMKAC 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 543
ZrmI AGTACT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.