Rorug03G0135400

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
11070630 .. 11076498
5869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0135400.1

Sequence Viewer

Length: 990 bp
ATGCTGATTAAAATTAGAAGAGTGGTCAGAAAATACTACTACTACTACTCTGATTCAAAGGCAGATGAGAGGTGGTCTAATGGTCTCCCACAAGAAATCTTGCTATTGATTTTACAAAGGCTATGCATATCGGATTACCTTGGGGAACCAAGTATGTGTTTGTTGGCGAGCTGCTGTGGAGATGGGTGTTGCTACCAAGAGTTGCCTTCCTCATATTCTATATGTGCATCACTTTTGAAGGTTCAAACTCCCCCGCCCTTCACACTTTTAAGCGTCGGCCAGGTCGTCACCTTTTGGGAAGGGGAGATTGTTGACACCAAGAATTATACTTTCTTCACTGAGAAGTGGGAAGCAACACAAGATGATGATATAAGGCACTGGACCAAATTTCCTTCTTTTTCTGCTCTATTGAGCCAAGTGGAAGTTGATGGTGGCAAATCATTAGATCTCAGCAACTATCCATACATATTCATGAGATGGAAGGAGCAATACTTTGTGAATGTTGGCACAGACTGTGGCTCCATCAACGGCTTCTATTATGATCCTAATAGCAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTACGGGGTTTCATTTACGGGTACAACAACAGTCTCTCGGAAGAATTTCTTCCATTCAAGTGTGGGTGGTTCAGCAGGTCAAAGACATAAACAAGCTGGGTTTTATGGGTCTGGTTCAAGAAGAGCTTGTGTTGATAGAAGATTGGTACATTTTCAGAATGCCAGATGTGCTACAGCACTACAAACCAAATCTGTTACACACCAGGCTCCAACAATCGCAAGTCTTCTTCCCTGTTACTCTAGAAGAAGTTTACAATGCACTCCATCATATTGGCCCTCTTAAGGCTCCAGGTCCGGACGGAATCCATGCTATCTTCTTCCAATCCTATTGGAACCAGAAGAACTTTAGTTTGTTTTGTAATTTTATTTCTTCAAACTTTGGCAGTGAATGTTGA

Protein Analysis

329

Amino Acids

38.18

Weight (kDa)

5.82

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vac_ImportDeg PF09783 94 - 180 1.2e-22 Vacuolar import and degradation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 543, 661
AccIII TCCGGA 1 cut(s) 889
AciI CCGC 1 cut(s) 254
AclWI GGATC 1 cut(s) 536
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 2 cut(s) 386, 639
AfaI GTAC 2 cut(s) 618, 743
AfiI CCNNNNNNNGG 1 cut(s) 877
AflII CTTAAG 1 cut(s) 875
AgsI TTSAA 6 cut(s) 57, 238, 245, 653, 713, 969
AjnI CCWGG 3 cut(s) 279, 797, 883
AluBI AGCT 3 cut(s) 171, 691, 721
AluI AGCT 3 cut(s) 171, 691, 721
Alw26I GTCTC 2 cut(s) 89, 633
AlwI GGATC 1 cut(s) 536
Aor13HI TCCGGA 1 cut(s) 889
AoxI GGCC 3 cut(s) 277, 563, 868
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 2 cut(s) 386, 639
Asp700I GAANNNNTTC 2 cut(s) 640, 643
AspS9I GGNCC 3 cut(s) 381, 869, 887
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 2 cut(s) 381, 887
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
BbsI GAAGAC 1 cut(s) 811
BbvI GCAGC 1 cut(s) 158
BccI CCATC 5 cut(s) 176, 422, 471, 530, 867
BceAI ACGGC 1 cut(s) 544
BciT130I CCWGG 3 cut(s) 281, 799, 885
BcoDI GTCTC 2 cut(s) 89, 633
BfaI CTAG 1 cut(s) 836
BfmI CTRYAG 1 cut(s) 767
BfrI CTTAAG 1 cut(s) 875
BfuAI ACCTGC 2 cut(s) 543, 661
BglII AGATCT 1 cut(s) 445
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme1390I CCNGG 3 cut(s) 281, 799, 885
Bme18I GGWCC 2 cut(s) 381, 887
BmgT120I GGNCC 3 cut(s) 381, 869, 887
BmiI GGNNCC 5 cut(s) 147, 520, 803, 882, 929
BmrFI CCNGG 3 cut(s) 281, 799, 885
BmsI GCATC 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 811
BpmI CTGGAG 1 cut(s) 867
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 889
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 1 cut(s) 877
Bse1I ACTGG 1 cut(s) 383
BseAI TCCGGA 1 cut(s) 889
BseBI CCWGG 3 cut(s) 281, 799, 885
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 877
BseMII CTCAG 2 cut(s) 330, 463
BseNI ACTGG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 158
BseYI CCCAGC 1 cut(s) 691
BshFI GGCC 3 cut(s) 279, 565, 870
BsiSI CCGG 1 cut(s) 890
BslI CCNNNNNNNGG 1 cut(s) 877
BsmAI GTCTC 2 cut(s) 89, 633
BsmI GAATGC 1 cut(s) 759
BsnI GGCC 3 cut(s) 279, 565, 870
Bso31I GGTCTC 1 cut(s) 89
Bsp13I TCCGGA 1 cut(s) 889
Bsp143I GATC 2 cut(s) 445, 541
BspACI CCGC 1 cut(s) 254
BspANI GGCC 3 cut(s) 279, 565, 870
BspCNI CTCAG 2 cut(s) 331, 462
BspEI TCCGGA 1 cut(s) 889
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 5 cut(s) 147, 520, 803, 882, 929
BspMI ACCTGC 2 cut(s) 543, 661
BspPI GGATC 1 cut(s) 536
BspQI GCTCTTC 1 cut(s) 711
BspTI CTTAAG 1 cut(s) 875
BspTNI GGTCTC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 2 cut(s) 445, 541
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 3 cut(s) 281, 799, 885
Bst4CI ACNGT 2 cut(s) 515, 627
Bst6I CTCTTC 2 cut(s) 13, 711
BstAFI CTTAAG 1 cut(s) 875
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 339, 449
BstKTI GATC 2 cut(s) 448, 544
BstMAI GTCTC 2 cut(s) 89, 633
BstMBI GATC 2 cut(s) 445, 541
BstMWI GCNNNNNNNGC 2 cut(s) 591, 763
BstNI CCWGG 3 cut(s) 281, 799, 885
BstSCI CCNGG 3 cut(s) 279, 797, 883
BstSFI CTRYAG 1 cut(s) 767
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 811
BstX2I RGATCY 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 866
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 3 cut(s) 279, 565, 870
BtsI GCAGTG 1 cut(s) 985
BtsIMutI CAGTG 3 cut(s) 336, 376, 985
BveI ACCTGC 2 cut(s) 543, 661
Cac8I GCNNGC 1 cut(s) 169
CciI TCATGA 1 cut(s) 471
Cfr13I GGNCC 3 cut(s) 381, 869, 887
CseI GACGC 1 cut(s) 262
Csp6I GTAC 2 cut(s) 617, 742
CviAII CATG 2 cut(s) 472, 902
CviQI GTAC 2 cut(s) 617, 742
DdeI CTNAG 2 cut(s) 339, 449
DpnI GATC 2 cut(s) 447, 543
DpnII GATC 2 cut(s) 445, 541
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 2 cut(s) 13, 711
EarI CTCTTC 2 cut(s) 13, 711
Eco130I CCWWGG 1 cut(s) 139
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 2 cut(s) 381, 887
EcoRII CCWGG 3 cut(s) 279, 797, 883
EcoT14I CCWWGG 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 475, 905
FalI AAGNNNNNCTT 4 cut(s) 628, 660, 705, 737
FatI CATG 2 cut(s) 471, 901
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 1 cut(s) 836
GluI GCNGC 1 cut(s) 172
GsaI CCCAGC 1 cut(s) 695
GsuI CTGGAG 1 cut(s) 867
HaeIII GGCC 3 cut(s) 279, 565, 870
HapII CCGG 1 cut(s) 890
HgaI GACGC 1 cut(s) 262
Hin1II CATG 2 cut(s) 475, 905
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 2 cut(s) 53, 897
HpaII CCGG 1 cut(s) 890
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 313, 847
Hpy188I TCNGA 5 cut(s) 29, 52, 133, 635, 752
Hpy188III TCNNGA 4 cut(s) 472, 713, 836, 890
Hpy8I GTNNAC 2 cut(s) 313, 847
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 6 cut(s) 216, 232, 268, 293, 402, 475
HpyCH4III ACNGT 2 cut(s) 515, 627
HpyCH4V TGCA 3 cut(s) 126, 227, 854
HpyF10VI GCNNNNNNNGC 2 cut(s) 591, 763
HpyF3I CTNAG 2 cut(s) 339, 449
Hsp92II CATG 2 cut(s) 475, 905
Kpn2I TCCGGA 1 cut(s) 889
Kzo9I GATC 2 cut(s) 445, 541
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 4 cut(s) 484, 524, 807, 886
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 236
MaeI CTAG 1 cut(s) 836
MaeIII GTNAC 3 cut(s) 286, 789, 829
MalI GATC 2 cut(s) 447, 543
MboI GATC 2 cut(s) 445, 541
MflI RGATCY 1 cut(s) 445
MluCI AATT 5 cut(s) 12, 322, 386, 639, 955
MmeI TCCRAC 1 cut(s) 829
MnlI CCTC 3 cut(s) 63, 220, 882
Mph1103I ATGCAT 1 cut(s) 128
MroI TCCGGA 1 cut(s) 889
MroXI GAANNNNTTC 2 cut(s) 640, 643
MseI TTAA 3 cut(s) 9, 269, 876
MslI CAYNNNNRTG 2 cut(s) 470, 653
MspCI CTTAAG 1 cut(s) 875
MspI CCGG 1 cut(s) 890
MspR9I CCNGG 3 cut(s) 281, 799, 885
Mva1269I GAATGC 1 cut(s) 759
MvaI CCWGG 3 cut(s) 281, 799, 885
MwoI GCNNNNNNNGC 2 cut(s) 591, 763
NdeII GATC 2 cut(s) 445, 541
NlaIII CATG 2 cut(s) 475, 905
NlaIV GGNNCC 5 cut(s) 147, 520, 803, 882, 929
NmuCI GTSAC 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 128
PagI TCATGA 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 711
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 1 cut(s) 759
PdmI GAANNNNTTC 2 cut(s) 640, 643
PfeI GAWTC 2 cut(s) 53, 897
PkrI GCNGC 1 cut(s) 173
Psp6I CCWGG 3 cut(s) 279, 797, 883
PspFI CCCAGC 1 cut(s) 691
PspGI CCWGG 3 cut(s) 279, 797, 883
PspN4I GGNNCC 5 cut(s) 147, 520, 803, 882, 929
PspPI GGNCC 3 cut(s) 381, 869, 887
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 2 cut(s) 618, 743
RsaNI GTAC 2 cut(s) 617, 742
RseI CAYNNNNRTG 2 cut(s) 470, 653
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 3 cut(s) 9, 269, 876
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 2 cut(s) 445, 541
Sau96I GGNCC 3 cut(s) 381, 869, 887
ScrFI CCNGG 3 cut(s) 281, 799, 885
SfaNI GCATC 1 cut(s) 236
SfcI CTRYAG 1 cut(s) 767
SinI GGWCC 2 cut(s) 381, 887
SmiMI CAYNNNNRTG 2 cut(s) 470, 653
SmlI CTYRAG 1 cut(s) 875
SmoI CTYRAG 1 cut(s) 875
Sse9I AATT 5 cut(s) 12, 322, 386, 639, 955
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 836
StyD4I CCNGG 3 cut(s) 279, 797, 883
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 2 cut(s) 515, 627
TasI AATT 5 cut(s) 12, 322, 386, 639, 955
TfiI GAWTC 2 cut(s) 53, 897
Tru1I TTAA 3 cut(s) 9, 269, 876
Tru9I TTAA 3 cut(s) 9, 269, 876
TscAI CASTG 3 cut(s) 343, 383, 985
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 460, 596
TspGWI ACGGA 1 cut(s) 909
TspRI CASTG 3 cut(s) 343, 383, 985
Vha464I CTTAAG 1 cut(s) 875
VpaK11BI GGWCC 2 cut(s) 381, 887
XapI RAATTY 2 cut(s) 386, 639
XbaI TCTAGA 1 cut(s) 835
XmnI GAANNNNTTC 2 cut(s) 640, 643
XspI CTAG 1 cut(s) 836
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.