Rorug03G0002400

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000230
Physical Location & Seq
Reverse (-)
250447 .. 252542
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0002400.1

Sequence Viewer

Length: 837 bp
ATGGTGGTCTTTGAACAACTGTCTCAGCTTCACATTCTTACTTATTCTGAAGATGAGATCTTTGATGTAAAATTGTTGATTCTCCGTGTATGGTTTCTGGTGGATTCGGTACTTGATATAAATGTTAATGAGGAGGTGTCAAATGGTTCAACTGATACCGAGTTCAAGCATTCTAATGATGGTGCCTTGGTAGGCACTTCTCTTCAGAAGATACTTTGGGTTGTACAAAATGATGAAAGAACTCAAAACTCTTCTAAAGATGGATCTGTAGTCGAAGTAGATGAGCCATATGTGGGTCAGGAATTTGATACAGAAGTAAATGCACAGGCATTTTACAATGTCTATGGCTTGCGTATGGGTTTCAATACTCGTATGAACTATCTGTCTCGATCCAAACATGATGGAACTATCATTGCACGAACATTTGTATGCAGCAAAGAGGGTTACCGGAAGCCTGATAGGCGTGACAAGAAGACTGTAAACCCACGGGCTCCCACTAGGGTAGGTTGTATGGCAATGCTGTCAATAAAAAAACTGAATATTGGCAAGTGGGTTGTTACTAAGTTTATCAAGGAGCACAATCATGCATTGATAGCGAGCAAACGTCCAAAGGGGTTGATTGAGGATCAAATACCGGATGATAAGACAAAGATTGAAGAATTAACTCGAGAGCTGTTCCTTGAGAGAGAGCGTTCTGCTTCACTAAGAAAAGTCATAGACCTTCTATTTGAACACATCGAGGAACATACACAAGACCTGTCAAAGAAAGTCCAGTATGTTGTGGATAAGGTAAAGGAGATTGAATCAGAAGGGACAAACCGCCATAAGCTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

278

Amino Acids

32.14

Weight (kDa)

6.47

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 111 - 198 9.8e-30 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 1 cut(s) 820
AclWI GGATC 3 cut(s) 271, 384, 633
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 2 cut(s) 69, 188
AfaI GTAC 2 cut(s) 111, 225
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 7 cut(s) 14, 150, 166, 364, 656, 731, 803
AluBI AGCT 3 cut(s) 28, 673, 829
AluI AGCT 3 cut(s) 28, 673, 829
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 2 cut(s) 27, 390
AlwI GGATC 3 cut(s) 271, 384, 633
Ama87I CYCGRG 1 cut(s) 666
ApeKI GCWGC 1 cut(s) 432
ApoI RAATTY 1 cut(s) 302
ArsI GACNNNNNNTTYG 2 cut(s) 710, 742
AvaI CYCGRG 1 cut(s) 666
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 444
BccI CCATC 3 cut(s) 173, 254, 395
BcoDI GTCTC 2 cut(s) 27, 390
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 267
BglI GCCNNNNNGGC 1 cut(s) 460
BglII AGATCT 1 cut(s) 57
BisI GCNGC 1 cut(s) 433
BlsI GCNGC 1 cut(s) 434
BmeT110I CYCGRG 1 cut(s) 666
BmiI GGNNCC 2 cut(s) 184, 492
BpiI GAAGAC 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 701
BsaJI CCNNGG 2 cut(s) 186, 485
BsaWI WCCGGW 2 cut(s) 447, 634
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 772
Bse3DI GCAATG 2 cut(s) 411, 522
BseDI CCNNGG 2 cut(s) 186, 485
BseGI GGATG 1 cut(s) 643
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMI GCAATG 2 cut(s) 411, 522
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 772
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 444
BshNI GGYRCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 579
BsiHKCI CYCGRG 1 cut(s) 666
BsiSI CCGG 2 cut(s) 448, 635
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 27, 390
BsmFI GGGAC 1 cut(s) 826
BsmI GAATGC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 666
Bsp1286I GDGCHC 2 cut(s) 493, 579
Bsp1407I TGTACA 1 cut(s) 223
Bsp143I GATC 4 cut(s) 57, 263, 389, 625
BspACI CCGC 1 cut(s) 820
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 184, 492
BspPI GGATC 3 cut(s) 271, 384, 633
BspT107I GGYRCC 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 411, 522
BsrGI TGTACA 1 cut(s) 223
BsrI ACTGG 1 cut(s) 772
BssECI CCNNGG 2 cut(s) 186, 485
BssMI GATC 4 cut(s) 57, 263, 389, 625
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 21, 478
Bst6I CTCTTC 2 cut(s) 207, 256
BstAUI TGTACA 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 350, 598
BstDEI CTNAG 4 cut(s) 24, 561, 704, 830
BstDSI CCRYGG 1 cut(s) 485
BstEII GGTNACC 1 cut(s) 443
BstF5I GGATG 1 cut(s) 643
BstKTI GATC 4 cut(s) 60, 266, 392, 628
BstMAI GTCTC 2 cut(s) 27, 390
BstMBI GATC 4 cut(s) 57, 263, 389, 625
BstMWI GCNNNNNNNGC 2 cut(s) 460, 593
BstPI GGTNACC 1 cut(s) 443
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 444
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 2 cut(s) 57, 263
BstYI RGATCY 2 cut(s) 57, 263
BtgI CCRYGG 1 cut(s) 485
BtsCI GGATG 1 cut(s) 643
Cac8I GCNNGC 2 cut(s) 350, 598
Csp6I GTAC 2 cut(s) 110, 224
CviAII CATG 2 cut(s) 398, 584
CviJI RGCY 7 cut(s) 28, 286, 348, 454, 491, 673, 829
CviKI_1 RGCY 7 cut(s) 28, 286, 348, 454, 491, 673, 829
CviQI GTAC 2 cut(s) 110, 224
DdeI CTNAG 4 cut(s) 24, 561, 704, 830
DpnI GATC 4 cut(s) 59, 265, 391, 627
DpnII GATC 4 cut(s) 57, 263, 389, 625
Eam1104I CTCTTC 2 cut(s) 207, 256
EarI CTCTTC 2 cut(s) 207, 256
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 493
Eco57I CTGAAG 2 cut(s) 69, 188
Eco88I CYCGRG 1 cut(s) 666
Eco91I GGTNACC 1 cut(s) 443
EcoO65I GGTNACC 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 401, 587
FaqI GGGAC 1 cut(s) 826
FatI CATG 2 cut(s) 397, 583
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 433
FokI GGATG 1 cut(s) 650
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 1 cut(s) 433
FspBI CTAG 1 cut(s) 498
GluI GCNGC 1 cut(s) 433
HapII CCGG 2 cut(s) 448, 635
Hin1II CATG 2 cut(s) 401, 587
HinfI GANTC 3 cut(s) 79, 104, 803
HpaII CCGG 2 cut(s) 448, 635
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 4 cut(s) 49, 207, 808, 833
Hpy188III TCNNGA 3 cut(s) 299, 387, 668
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 2 cut(s) 731, 803
HpyCH4III ACNGT 2 cut(s) 21, 478
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 4 cut(s) 323, 416, 432, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 460, 593
HpyF3I CTNAG 4 cut(s) 24, 561, 704, 830
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 2 cut(s) 401, 587
Kzo9I GATC 4 cut(s) 57, 263, 389, 625
LmnI GCTCC 2 cut(s) 496, 574
LpnPI CCDG 8 cut(s) 83, 284, 311, 461, 468, 648, 770, 785
Lsp1109I GCAGC 1 cut(s) 444
MaeI CTAG 1 cut(s) 498
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 3 cut(s) 443, 464, 556
MalI GATC 4 cut(s) 59, 265, 391, 627
MboI GATC 4 cut(s) 57, 263, 389, 625
MboII GAAGA 6 cut(s) 62, 194, 220, 243, 484, 668
MflI RGATCY 2 cut(s) 57, 263
MhlI GDGCHC 2 cut(s) 493, 579
MluCI AATT 3 cut(s) 71, 302, 659
MnlI CCTC 5 cut(s) 124, 127, 433, 616, 733
Mph1103I ATGCAT 1 cut(s) 589
MseI TTAA 2 cut(s) 126, 662
MslI CAYNNNNRTG 3 cut(s) 174, 427, 582
MspI CCGG 2 cut(s) 448, 635
Mva1269I GAATGC 1 cut(s) 169
MwoI GCNNNNNNNGC 2 cut(s) 460, 593
NdeI CATATG 1 cut(s) 289
NdeII GATC 4 cut(s) 57, 263, 389, 625
NlaIII CATG 2 cut(s) 401, 587
NlaIV GGNNCC 2 cut(s) 184, 492
NmuCI GTSAC 1 cut(s) 464
NsiI ATGCAT 1 cut(s) 589
PaeR7I CTCGAG 1 cut(s) 666
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 3 cut(s) 79, 104, 803
PkrI GCNGC 1 cut(s) 434
PspEI GGTNACC 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 184, 492
PsuI RGATCY 2 cut(s) 57, 263
RsaI GTAC 2 cut(s) 111, 225
RsaNI GTAC 2 cut(s) 110, 224
RseI CAYNNNNRTG 3 cut(s) 174, 427, 582
SaqAI TTAA 2 cut(s) 126, 662
SatI GCNGC 1 cut(s) 433
Sau3AI GATC 4 cut(s) 57, 263, 389, 625
SduI GDGCHC 2 cut(s) 493, 579
SetI ASST 9 cut(s) 30, 138, 508, 607, 675, 723, 759, 792, 831
SfcI CTRYAG 1 cut(s) 267
Sfr274I CTCGAG 1 cut(s) 666
SlaI CTCGAG 1 cut(s) 666
SmiMI CAYNNNNRTG 3 cut(s) 174, 427, 582
SmlI CTYRAG 2 cut(s) 666, 680
SmoI CTYRAG 2 cut(s) 666, 680
Sse9I AATT 3 cut(s) 71, 302, 659
SsiI CCGC 1 cut(s) 820
SspI AATATT 1 cut(s) 541
SspMI CTAG 1 cut(s) 498
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 21, 478
TaiI ACGT 1 cut(s) 607
TaqI TCGA 4 cut(s) 273, 388, 667, 738
TasI AATT 3 cut(s) 71, 302, 659
TatI WGTACW 1 cut(s) 223
TfiI GAWTC 3 cut(s) 79, 104, 803
Tru1I TTAA 2 cut(s) 126, 662
Tru9I TTAA 2 cut(s) 126, 662
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 1 cut(s) 432
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 249, 389
TspGWI ACGGA 1 cut(s) 74
XapI RAATTY 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 666
XspI CTAG 1 cut(s) 498
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.