Prupe.6G344200_v2.0.a1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000230
Physical Location & Seq
Reverse (-)
29602734 .. 29603314
581 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G344200.1

Sequence Viewer

Length: 489 bp
ATGATTTTCATCTTTTATCTAATTCTATGCCTTAATTCAGCTACAGCTACACCAGTTGGCAATAATAATTACAATATTAATGGCGGGTTTAGTGTCCAACCTATCCACCAAAACTCCCCAAATTCACCATTCTACAATCATAACAACAGAAACAAAGCTTTTCGACGTCTCATGAGCCCGTCCAAGGATGCAAACCTCACACAGTCACAAGTGAAGCGTGACATGGACGATGGTGAAGGTGCACAACTTATGAAGCTCTCAATTGGAACTCCACCACATGATATTTATGCTGTGGCTGATACAGGCAGTACGCTATTATGGACACAATGTGAACCATGTCCCGGTTGCTACAAGCAGAAGAATCCTAAATTCGATCCCGAAAAAGTTTGCAATTACAATTACTCTTATCTGGACGAAACAGTTACCGCAGGAGTTGTGGCCAGAGAGACAGTTACCTTGACATCCACGTCAGGGAAGCCTAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

163

Amino Acids

17.96

Weight (kDa)

8.25

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 466
AatII GACGTC 1 cut(s) 169
AciI CCGC 2 cut(s) 84, 426
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 438
AcsI RAATTY 2 cut(s) 121, 368
AcyI GRCGYC 1 cut(s) 166
AdeI CACNNNGTG 1 cut(s) 329
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 3 cut(s) 184, 341, 471
AjiI CACGTC 1 cut(s) 468
AluBI AGCT 4 cut(s) 41, 47, 158, 256
AluI AGCT 4 cut(s) 41, 47, 158, 256
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 173, 440
Alw44I GTGCAC 1 cut(s) 240
AlwI GGATC 1 cut(s) 368
AoxI GGCC 1 cut(s) 438
ApaLI GTGCAC 1 cut(s) 240
ApoI RAATTY 2 cut(s) 121, 368
AseI ATTAAT 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 2 cut(s) 117, 245
BaeGI GKGCMC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 440
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 244
BccI CCATC 1 cut(s) 224
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 173, 440
BfmI CTRYAG 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 342
BmgBI CACGTC 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 342
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 341, 471
Bse1I ACTGG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 193, 461
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 184, 341, 471
BseNI ACTGG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 244
BshFI GGCC 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 3 cut(s) 184, 341, 471
BsmAI GTCTC 2 cut(s) 173, 440
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 179, 244
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 2 cut(s) 84, 426
BspANI GGCC 1 cut(s) 440
BspHI TCATGA 1 cut(s) 171
BspPI GGATC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 373
BssNI GRCGYC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 3 cut(s) 204, 421, 451
BstACI GRCGYC 1 cut(s) 166
BstF5I GGATG 2 cut(s) 193, 461
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 2 cut(s) 173, 440
BstMBI GATC 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 440
BtrI CACGTC 1 cut(s) 468
BtsCI GGATG 2 cut(s) 193, 461
CciI TCATGA 1 cut(s) 171
Csp6I GTAC 1 cut(s) 309
CviAII CATG 4 cut(s) 172, 223, 278, 336
CviJI RGCY 8 cut(s) 41, 47, 158, 177, 256, 296, 440, 478
CviKI_1 RGCY 8 cut(s) 41, 47, 158, 177, 256, 296, 440, 478
CviQI GTAC 1 cut(s) 309
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
DraIII CACNNNGTG 1 cut(s) 329
DrdI GACNNNNNNGTC 1 cut(s) 466
DseDI GACNNNNNNGTC 1 cut(s) 466
EaeI YGGCCR 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 4 cut(s) 175, 226, 281, 339
FaiI YATR 9 cut(s) 28, 141, 173, 224, 251, 279, 288, 319, 337
FaqI GGGAC 1 cut(s) 324
FatI CATG 4 cut(s) 171, 222, 277, 335
FauI CCCGC 1 cut(s) 77
FokI GGATG 2 cut(s) 200, 448
FriOI GRGCYC 1 cut(s) 179
HaeIII GGCC 1 cut(s) 440
HapII CCGG 1 cut(s) 342
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 4 cut(s) 175, 226, 281, 339
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 1 cut(s) 361
HpaII CCGG 1 cut(s) 342
HphI GGTGA 2 cut(s) 117, 245
Hpy166II GTNNAC 2 cut(s) 242, 332
Hpy188III TCNNGA 3 cut(s) 172, 377, 410
Hpy8I GTNNAC 2 cut(s) 242, 332
Hpy99I CGWCG 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 3 cut(s) 204, 421, 451
HpyCH4IV ACGT 2 cut(s) 166, 467
HpyCH4V TGCA 3 cut(s) 191, 242, 390
HpySE526I ACGT 2 cut(s) 166, 467
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 4 cut(s) 175, 226, 281, 339
Kzo9I GATC 1 cut(s) 373
LpnPI CCDG 7 cut(s) 66, 288, 355, 395, 414, 454, 456
LweI GCATC 1 cut(s) 178
MaeII ACGT 2 cut(s) 166, 467
MaeIII GTNAC 4 cut(s) 204, 218, 421, 451
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 1 cut(s) 370
MfeI CAATTG 1 cut(s) 261
MhlI GDGCHC 2 cut(s) 179, 244
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 8 cut(s) 21, 34, 67, 121, 261, 368, 391, 397
MluNI TGGCCA 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 1 cut(s) 206
Mox20I TGGCCA 1 cut(s) 440
MscI TGGCCA 1 cut(s) 440
MseI TTAA 2 cut(s) 33, 78
Msp20I TGGCCA 1 cut(s) 440
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 261
NciI CCSGG 1 cut(s) 342
NdeII GATC 1 cut(s) 373
NlaIII CATG 4 cut(s) 175, 226, 281, 339
NmuCI GTSAC 2 cut(s) 204, 218
PagI TCATGA 1 cut(s) 171
PfeI GAWTC 1 cut(s) 361
PshBI ATTAAT 1 cut(s) 78
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 33, 78
Sau3AI GATC 1 cut(s) 373
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 2 cut(s) 179, 244
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 42
Sse9I AATT 8 cut(s) 21, 34, 67, 121, 261, 368, 391, 397
SsiI CCGC 2 cut(s) 84, 426
SspI AATATT 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 3 cut(s) 204, 421, 451
TaiI ACGT 2 cut(s) 169, 470
TaqI TCGA 2 cut(s) 163, 372
TasI AATT 8 cut(s) 21, 34, 67, 121, 261, 368, 391, 397
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 2 cut(s) 33, 78
Tru9I TTAA 2 cut(s) 33, 78
TseFI GTSAC 2 cut(s) 204, 218
Tsp45I GTSAC 2 cut(s) 204, 218
TspDTI ATGAA 1 cut(s) 266
VneI GTGCAC 1 cut(s) 240
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 2 cut(s) 121, 368
ZraI GACGTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.