Rorug02G0629600

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000230
Physical Location & Seq
Forward (+)
74428994 .. 74429239
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0629600.1

Sequence Viewer

Length: 246 bp
ATGACACTCCTTCGAGCCCTCGGCCGGAGACACCTGACTTCTTCTCGGGCTCCGGCTACTGCTCAGACGGAGGAATACAAGAGGAGAAACTACGCCAACAATGTCACGGAGTACAACGGCGTCGTTAACTCCATCACTGCACAGAGACGGTTCTCTTTTCTCCTGAGGGACGTCTATGACGACATGTCGCTCGACGGAGTCCAGCCGGACCGAGACACCTTCCACTCGCTCATTTTGGGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

81

Amino Acids

9.29

Weight (kDa)

9.39

Isoelectric Point (pI)

71.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 22
AcyI GRCGYC 2 cut(s) 120, 171
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 24
AflIII ACRYGT 1 cut(s) 183
AhdI GACNNNNNGTC 1 cut(s) 184
Alw26I GTCTC 3 cut(s) 22, 139, 207
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 208, 239
AvaI CYCGRG 1 cut(s) 45
AvaII GGWCC 2 cut(s) 208, 239
AxyI CCTNAGG 1 cut(s) 164
BanII GRGCYC 2 cut(s) 19, 52
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 133
BcoDI GTCTC 3 cut(s) 22, 139, 207
Bme18I GGWCC 2 cut(s) 208, 239
BmeRI GACNNNNNGTC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 2 cut(s) 208, 239
BmiI GGNNCC 2 cut(s) 51, 240
BsaHI GRCGYC 2 cut(s) 120, 171
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse21I CCTNAGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 77, 155
BseRI GAGGAG 1 cut(s) 97
BseX3I CGGCCG 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 24
BsiEI CGRYCG 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 3 cut(s) 25, 53, 206
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 3 cut(s) 22, 139, 207
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 19, 52
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 76, 156
BspLI GGNNCC 2 cut(s) 51, 240
BssECI CCNNGG 1 cut(s) 19
BssNI GRCGYC 2 cut(s) 120, 171
Bst4CI ACNGT 1 cut(s) 150
BstACI GRCGYC 2 cut(s) 120, 171
BstDEI CTNAG 2 cut(s) 63, 164
BstMAI GTCTC 3 cut(s) 22, 139, 207
BstMCI CGRYCG 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 187
BstZI CGGCCG 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 164
BsuRI GGCC 1 cut(s) 24
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 208, 239
CpoI CGGWCCG 1 cut(s) 208
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 112
CspI CGGWCCG 1 cut(s) 208
CviAII CATG 2 cut(s) 184, 243
CviJI RGCY 5 cut(s) 17, 24, 50, 56, 205
CviKI_1 RGCY 5 cut(s) 17, 24, 50, 56, 205
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 63, 164
DriI GACNNNNNGTC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 22
EagI CGGCCG 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 184
EclXI CGGCCG 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 19, 52
Eco47I GGWCC 2 cut(s) 208, 239
Eco52I CGGCCG 1 cut(s) 22
Eco81I CCTNAGG 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 45
EcoT38I GRGCYC 2 cut(s) 19, 52
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 2 cut(s) 187, 246
FaiI YATR 3 cut(s) 177, 185, 244
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 183, 242
FriOI GRGCYC 2 cut(s) 19, 52
HaeIII GGCC 1 cut(s) 24
HapII CCGG 3 cut(s) 25, 53, 206
HgaI GACGC 1 cut(s) 109
Hin1I GRCGYC 2 cut(s) 120, 171
Hin1II CATG 2 cut(s) 187, 246
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 198
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 3 cut(s) 25, 53, 206
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 2 cut(s) 125, 197
HpyAV CCTTC 2 cut(s) 20, 229
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 63, 164
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 2 cut(s) 120, 171
Hsp92II CATG 2 cut(s) 187, 246
KspAI GTTAAC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 6 cut(s) 38, 47, 66, 176, 215, 219
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 103
MboII GAAGA 1 cut(s) 33
MhlI GDGCHC 2 cut(s) 19, 52
MlyI GAGTC 1 cut(s) 207
MnlI CCTC 4 cut(s) 29, 64, 75, 159
MseI TTAA 1 cut(s) 126
MspI CCGG 3 cut(s) 25, 53, 206
NlaIII CATG 2 cut(s) 187, 246
NlaIV GGNNCC 2 cut(s) 51, 240
NmuCI GTSAC 1 cut(s) 103
NspI RCATGY 1 cut(s) 187
PciI ACATGT 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PflFI GACNNNGTC 1 cut(s) 197
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PscI ACATGT 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 51, 240
PspPI GGNCC 2 cut(s) 208, 239
PsyI GACNNNGTC 1 cut(s) 197
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
Rsr2I CGGWCCG 1 cut(s) 208
RsrII CGGWCCG 1 cut(s) 208
SaqAI TTAA 1 cut(s) 126
Sau96I GGNCC 2 cut(s) 208, 239
SchI GAGTC 1 cut(s) 207
SduI GDGCHC 2 cut(s) 19, 52
SetI ASST 3 cut(s) 36, 174, 221
SinI GGWCC 2 cut(s) 208, 239
TaaI ACNGT 1 cut(s) 150
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 13, 192
TaqII GACCGA 1 cut(s) 225
TatI WGTACW 1 cut(s) 111
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspGWI ACGGA 3 cut(s) 83, 122, 210
TspRI CASTG 1 cut(s) 142
Tth111I GACNNNGTC 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 208, 239
XceI RCATGY 1 cut(s) 187
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.