Rmu_sc0034928.1_g000007

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034928.1
OG0000230
Physical Location & Seq
Forward (+)
18522 .. 18833
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034928.1_g000007.1.cds

Sequence Viewer

Length: 312 bp
atgggaagaattagtgttggagataagtttgtggcttttagctcttcaggaaaaatttcaaagggcaacatgtttgtgaactcaaaaacgctgaaaatgtttctgccgcaagatttctatgacagattggtagctgcagggagggagcagattccaatggcacccattgaagatgacctaactttggaaactcagcttttctacaaaagcaatgctaatcttggagggccaatattgatagtactttttaaatgtggagactattcagttcaccgacttgtatttgcacaacaggaatggacgattggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

103

Amino Acids

11.51

Weight (kDa)

7.86

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 160
AciI CCGC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 2 cut(s) 60, 170
AjuI GAANNNNNNNTTGG 1 cut(s) 288
AluBI AGCT 3 cut(s) 42, 134, 196
AluI AGCT 3 cut(s) 42, 134, 196
Alw26I GTCTC 1 cut(s) 252
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 263
BanI GGYRCC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 135
BisI GCNGC 2 cut(s) 107, 135
BlsI GCNGC 2 cut(s) 108, 136
BmcAI AGTACT 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 1 cut(s) 229
BshNI GGYRCC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 1 cut(s) 229
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 162
BspMAI CTGCAG 1 cut(s) 139
BspQI GCTCTTC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 242
CviAII CATG 1 cut(s) 70
CviJI RGCY 5 cut(s) 35, 42, 134, 196, 229
CviKI_1 RGCY 5 cut(s) 35, 42, 134, 196, 229
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 192
DraI TTTAAA 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 30
FaeI CATG 1 cut(s) 73
FaiI YATR 2 cut(s) 71, 120
FatI CATG 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 107, 135
Fsp4HI GCNGC 2 cut(s) 107, 135
GluI GCNGC 2 cut(s) 107, 135
HaeIII GGCC 1 cut(s) 229
Hin1II CATG 1 cut(s) 73
HinfI GANTC 1 cut(s) 151
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 2 cut(s) 79, 271
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 2 cut(s) 79, 271
HpyCH4V TGCA 2 cut(s) 137, 287
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 3 cut(s) 33, 123, 278
Lsp1109I GCAGC 1 cut(s) 121
MboII GAAGA 3 cut(s) 18, 36, 182
MluCI AATT 2 cut(s) 9, 54
MnlI CCTC 2 cut(s) 135, 218
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 74
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 162
NspI RCATGY 1 cut(s) 73
PciI ACATGT 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 2 cut(s) 108, 136
PscI ACATGT 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 227
PstI CTGCAG 1 cut(s) 139
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 107, 135
Sau96I GGNCC 1 cut(s) 227
ScaI AGTACT 1 cut(s) 243
SetI ASST 4 cut(s) 44, 136, 180, 198
SfcI CTRYAG 1 cut(s) 135
SgeI CNNG 7 cut(s) 60, 82, 122, 150, 233, 290, 305
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 2 cut(s) 9, 54
SsiI CCGC 1 cut(s) 107
SspI AATATT 1 cut(s) 234
TasI AATT 2 cut(s) 9, 54
TatI WGTACW 1 cut(s) 241
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 1 cut(s) 134
XapI RAATTY 1 cut(s) 54
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 55
ZrmI AGTACT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.