RLG00000025722

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000230
Physical Location & Seq
Reverse (-)
47874165 .. 47877617
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025722

Sequence Viewer

Length: 1332 bp
ATGGCAGCTAAGGCCTTGGCAATCAAGGAGGCAATTTACCTAGCAAGCTCCTTTTCCAATGTAGACATGGAAAACATGGACCGGGTCATCTTCCAAGTTGCAACCACCAATATCAACAACAATAATGGTGGCTTTAGCGCCCATCTTATCAGAAGGAACTCCAAGAATTCACCATTGTATAAATACAAAAACAATAAAGTTTTTCGACGGTTGATGGGTCCAGACACGGCTGGAGCACCAATGACAACTGATCCGGATAGTGGCCAACATATTATGAAGTTCTCAATGGGAACCCCGCCATTTGATATTTATGCCATTGCTGATACAGGGAGCGATCTACTATGGACGCAATGCCAACCGTGTAAAGTTTGCTATAAGACCAAATTTGACATTTTTGACCCGAGAAAATCCTCAACTTATAGGAACATTTCATGTTGGGCAAGCGACTGTAGACTCATCCAGAATCCATCGGTCTATCCGCCAAACTTTTGTAGAGAAAATCCTGAAGAAACTTGTGTATACCATGCTGCATATTTAAGCGGGCATAACTCAACAGGTCCATTCGCTAAAGAAACAATTACCTTCACATCCGCTACAGATAAAGTTGTAACCGTAGAAGATTATTTATTTGGGTGTGGGAATGAGAACAATTTCCATGGAAATAATTTGGGAGTTATTGGGCTTGGACGTGGCCCTTTGTCATTAGTTTCTCAAATGGCTCCCTATGTTGGAGGAAAAAAATTCTCTCATTGCTTCGTGGCAGATCCCAATATTGAAAGCAAGATCTATTTCGGGAACGGGAGTGAAGTTTTGGGTGAAGGGGTACTGACAGAACCTATGGCAGAACCAAACGGGGGTTATTCTTTGACAATATCAGGAATTACCATTGAAAATGACTTTGTTCCTTTTAACTCAACTGGGACATTGCTCAAGAAAGCTAACATGCTTGTTGACTCAGGTACACCTCTATCACGTTTACCACAAGACTTTTTTGATCGAGTGATAACTCAGCTAAACGACACAGTTAAATTAGAGTCATTCATGCAAAAAGGAGGTGGATTAAGTAACATTTGCTTCAATTACACGACGCTTCCAAAATTACCAACAGTGGCTTTAGAATTTGAGAGTGGTGGAAAATTGCAGTTGAATGAGAACCAATTATTTCAAATAGACGAAAAGCGCAAGGCGTTTTGCTTTATGATGATGAACAGCACTTCTAATTTTATGATTTTTGGAGGTACTCTTCAGACAAATTTCTTGATTGGTTATGACCTAGATAGAAAAGTGGTATCTTTCAAGCCCACTAATTGCGCAGACTTCAATAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

444

Amino Acids

49.05

Weight (kDa)

6.6

Isoelectric Point (pI)

28.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 91 - 266 2.1e-45 Xylanase inhibitor N-terminal
Asp PF00026 177 - 432 3.6e-10 Eukaryotic aspartyl protease
TAXi_C PF14541 287 - 433 6.4e-19 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1312
AccI GTMKAC 3 cut(s) 63, 451, 519
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 4 cut(s) 296, 479, 540, 591
AclWI GGATC 2 cut(s) 245, 758
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 5 cut(s) 166, 383, 740, 1118, 1252
AcuI CTGAAG 2 cut(s) 525, 1229
AfaI GTAC 3 cut(s) 825, 961, 1240
AfiI CCNNNNNNNGG 3 cut(s) 260, 728, 854
AgsI TTSAA 7 cut(s) 776, 890, 1078, 1147, 1166, 1297, 1321
AjiI CACGTC 1 cut(s) 689
AluBI AGCT 4 cut(s) 8, 48, 938, 1012
AluI AGCT 4 cut(s) 8, 48, 938, 1012
Alw21I GWGCWC 1 cut(s) 238
AlwI GGATC 2 cut(s) 245, 758
Ama87I CYCGRG 1 cut(s) 400
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 3 cut(s) 12, 262, 691
ApeKI GCWGC 2 cut(s) 5, 527
ApoI RAATTY 5 cut(s) 166, 383, 740, 1118, 1252
Asp700I GAANNNNTTC 1 cut(s) 650
AspLEI GCGC 3 cut(s) 140, 1182, 1313
AspS9I GGNCC 4 cut(s) 79, 218, 557, 692
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 162, 827
AvaI CYCGRG 1 cut(s) 400
AvaII GGWCC 3 cut(s) 79, 218, 557
BalI TGGCCA 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 17, 514
BccI CCATC 3 cut(s) 150, 208, 475
BceAI ACGGC 1 cut(s) 243
BcnI CCSGG 1 cut(s) 83
BfaI CTAG 2 cut(s) 41, 1274
BfmI CTRYAG 2 cut(s) 448, 594
BfoI RGCGCY 1 cut(s) 141
BglII AGATCT 1 cut(s) 783
BisI GCNGC 2 cut(s) 6, 528
BlsI GCNGC 2 cut(s) 7, 529
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 3 cut(s) 79, 218, 557
BmeT110I CYCGRG 1 cut(s) 400
BmgBI CACGTC 1 cut(s) 689
BmgT120I GGNCC 4 cut(s) 79, 218, 557, 692
BmiI GGNNCC 3 cut(s) 219, 292, 720
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 927
BmuI ACTGGG 1 cut(s) 927
BpmI CTGGAG 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 914
BpuMI CCSGG 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 15, 655
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 728, 854
Bse1I ACTGG 1 cut(s) 922
Bse3DI GCAATG 4 cut(s) 315, 356, 748, 923
BseAI TCCGGA 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 15, 655
BseGI GGATG 2 cut(s) 456, 587
BseLI CCNNNNNNNGG 3 cut(s) 260, 728, 854
BseMI GCAATG 4 cut(s) 315, 356, 748, 923
BseMII CTCAG 2 cut(s) 969, 1022
BseNI ACTGG 1 cut(s) 922
BseXI GCAGC 2 cut(s) 17, 514
BshFI GGCC 3 cut(s) 14, 264, 693
BsiHKAI GWGCWC 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 400
BsiSI CCGG 2 cut(s) 82, 254
BslFI GGGAC 1 cut(s) 934
BslI CCNNNNNNNGG 3 cut(s) 260, 728, 854
BsmFI GGGAC 1 cut(s) 934
BsnI GGCC 3 cut(s) 14, 264, 693
BsoBI CYCGRG 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 238
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 5 cut(s) 250, 334, 763, 783, 994
Bsp19I CCATGG 1 cut(s) 655
BspACI CCGC 4 cut(s) 296, 479, 540, 591
BspANI GGCC 3 cut(s) 14, 264, 693
BspCNI CTCAG 2 cut(s) 968, 1021
BspEI TCCGGA 1 cut(s) 253
BspLI GGNNCC 3 cut(s) 219, 292, 720
BspPI GGATC 2 cut(s) 245, 758
BsrDI GCAATG 4 cut(s) 315, 356, 748, 923
BsrI ACTGG 1 cut(s) 922
BssECI CCNNGG 2 cut(s) 15, 655
BssMI GATC 5 cut(s) 250, 334, 763, 783, 994
BssNAI GTATAC 1 cut(s) 520
BssT1I CCWWGG 2 cut(s) 15, 655
Bst1107I GTATAC 1 cut(s) 520
Bst4CI ACNGT 6 cut(s) 210, 360, 449, 613, 1024, 1108
Bst6I CTCTTC 1 cut(s) 1248
BstC8I GCNNGC 3 cut(s) 46, 442, 542
BstDEI CTNAG 3 cut(s) 9, 955, 1008
BstDSI CCRYGG 1 cut(s) 655
BstF5I GGATG 2 cut(s) 456, 587
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 3 cut(s) 140, 1182, 1313
BstKTI GATC 5 cut(s) 253, 337, 766, 786, 997
BstMBI GATC 5 cut(s) 250, 334, 763, 783, 994
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 946
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 2 cut(s) 448, 594
BstV1I GCAGC 2 cut(s) 17, 514
BstX2I RGATCY 2 cut(s) 763, 783
BstYI RGATCY 2 cut(s) 763, 783
BstZ17I GTATAC 1 cut(s) 520
BsuRI GGCC 3 cut(s) 14, 264, 693
BtgI CCRYGG 1 cut(s) 655
BtrI CACGTC 1 cut(s) 689
BtsCI GGATG 2 cut(s) 456, 587
BtsIMutI CAGTG 1 cut(s) 1113
Cac8I GCNNGC 3 cut(s) 46, 442, 542
CfoI GCGC 3 cut(s) 140, 1182, 1313
Cfr13I GGNCC 4 cut(s) 79, 218, 557, 692
CseI GACGC 2 cut(s) 355, 1096
Csp6I GTAC 3 cut(s) 824, 960, 1239
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 7 cut(s) 67, 76, 432, 524, 656, 943, 1042
CviQI GTAC 3 cut(s) 824, 960, 1239
DdeI CTNAG 3 cut(s) 9, 955, 1008
DpnI GATC 5 cut(s) 252, 336, 765, 785, 996
DpnII GATC 5 cut(s) 250, 334, 763, 783, 994
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 1248
EarI CTCTTC 1 cut(s) 1248
EciI GGCGGA 1 cut(s) 468
Eco130I CCWWGG 2 cut(s) 15, 655
Eco147I AGGCCT 1 cut(s) 14
Eco47I GGWCC 3 cut(s) 79, 218, 557
Eco57I CTGAAG 2 cut(s) 525, 1229
Eco88I CYCGRG 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 15, 655
ErhI CCWWGG 2 cut(s) 15, 655
FaeI CATG 7 cut(s) 70, 79, 435, 527, 659, 946, 1045
FaqI GGGAC 1 cut(s) 934
FatI CATG 7 cut(s) 66, 75, 431, 523, 655, 942, 1041
FauI CCCGC 2 cut(s) 303, 533
FblI GTMKAC 3 cut(s) 63, 451, 519
Fnu4HI GCNGC 2 cut(s) 6, 528
FokI GGATG 2 cut(s) 443, 574
Fsp4HI GCNGC 2 cut(s) 6, 528
FspBI CTAG 2 cut(s) 41, 1274
FspI TGCGCA 1 cut(s) 1312
GlaI GCGC 3 cut(s) 139, 1181, 1312
GluI GCNGC 2 cut(s) 6, 528
GsuI CTGGAG 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 3 cut(s) 14, 264, 693
HapII CCGG 2 cut(s) 82, 254
HgaI GACGC 2 cut(s) 355, 1096
HhaI GCGC 3 cut(s) 140, 1182, 1313
Hin1II CATG 7 cut(s) 70, 79, 435, 527, 659, 946, 1045
Hin6I GCGC 3 cut(s) 138, 1180, 1311
HinP1I GCGC 3 cut(s) 138, 1180, 1311
HincII GTYRAC 1 cut(s) 952
HindII GTYRAC 1 cut(s) 952
HinfI GANTC 4 cut(s) 453, 463, 953, 1034
HpaII CCGG 2 cut(s) 82, 254
HphI GGTGA 2 cut(s) 162, 827
Hpy166II GTNNAC 6 cut(s) 64, 452, 520, 952, 962, 977
Hpy188I TCNGA 2 cut(s) 152, 1248
Hpy188III TCNNGA 8 cut(s) 221, 254, 460, 503, 793, 876, 931, 1258
Hpy8I GTNNAC 6 cut(s) 64, 452, 520, 952, 962, 977
Hpy99I CGWCG 2 cut(s) 210, 1090
HpyAV CCTTC 3 cut(s) 147, 592, 812
HpyCH4III ACNGT 6 cut(s) 210, 360, 449, 613, 1024, 1108
HpyCH4IV ACGT 2 cut(s) 688, 973
HpyCH4V TGCA 4 cut(s) 101, 530, 1045, 1141
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 9, 955, 1008
HpySE526I ACGT 2 cut(s) 688, 973
Hsp92II CATG 7 cut(s) 70, 79, 435, 527, 659, 946, 1045
HspAI GCGC 3 cut(s) 138, 1180, 1311
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 5 cut(s) 250, 334, 763, 783, 994
LmnI GCTCC 4 cut(s) 53, 233, 330, 724
Lsp1109I GCAGC 2 cut(s) 17, 514
MaeI CTAG 2 cut(s) 41, 1274
MaeII ACGT 2 cut(s) 688, 973
MaeIII GTNAC 2 cut(s) 607, 1064
MalI GATC 5 cut(s) 252, 336, 765, 785, 996
MboI GATC 5 cut(s) 250, 334, 763, 783, 994
MboII GAAGA 4 cut(s) 82, 518, 629, 1235
MflI RGATCY 2 cut(s) 763, 783
MhlI GDGCHC 1 cut(s) 238
MlsI TGGCCA 1 cut(s) 264
MluNI TGGCCA 1 cut(s) 264
MlyI GAGTC 3 cut(s) 447, 947, 1043
MmeI TCCRAC 1 cut(s) 709
MnlI CCTC 6 cut(s) 22, 421, 725, 975, 1046, 1229
Mox20I TGGCCA 1 cut(s) 264
MroI TCCGGA 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 650
MscI TGGCCA 1 cut(s) 264
MseI TTAA 4 cut(s) 536, 909, 1026, 1061
Msp20I TGGCCA 1 cut(s) 264
MspI CCGG 2 cut(s) 82, 254
MspR9I CCNGG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 83
NcoI CCATGG 1 cut(s) 655
NdeII GATC 5 cut(s) 250, 334, 763, 783, 994
NlaIII CATG 7 cut(s) 70, 79, 435, 527, 659, 946, 1045
NlaIV GGNNCC 3 cut(s) 219, 292, 720
NsbI TGCGCA 1 cut(s) 1312
NspI RCATGY 1 cut(s) 946
PceI AGGCCT 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 1 cut(s) 463
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 7, 529
PleI GAGTC 3 cut(s) 447, 947, 1042
PpsI GAGTC 3 cut(s) 447, 947, 1042
PspN4I GGNNCC 3 cut(s) 219, 292, 720
PspPI GGNCC 4 cut(s) 79, 218, 557, 692
PsuI RGATCY 2 cut(s) 763, 783
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 3 cut(s) 825, 961, 1240
RsaNI GTAC 3 cut(s) 824, 960, 1239
SaqAI TTAA 4 cut(s) 536, 909, 1026, 1061
SatI GCNGC 2 cut(s) 6, 528
Sau3AI GATC 5 cut(s) 250, 334, 763, 783, 994
Sau96I GGNCC 4 cut(s) 79, 218, 557, 692
SchI GAGTC 3 cut(s) 447, 947, 1043
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 238
SfcI CTRYAG 2 cut(s) 448, 594
SinI GGWCC 3 cut(s) 79, 218, 557
SmlI CTYRAG 1 cut(s) 929
SmoI CTYRAG 1 cut(s) 929
SseBI AGGCCT 1 cut(s) 14
SsiI CCGC 4 cut(s) 296, 479, 540, 591
SspI AATATT 1 cut(s) 772
SspMI CTAG 2 cut(s) 41, 1274
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 2 cut(s) 15, 655
TaaI ACNGT 6 cut(s) 210, 360, 449, 613, 1024, 1108
TaiI ACGT 2 cut(s) 691, 976
TaqI TCGA 2 cut(s) 205, 997
TaqII GACCGA 1 cut(s) 460
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 4 cut(s) 536, 909, 1026, 1061
Tru9I TTAA 4 cut(s) 536, 909, 1026, 1061
TscAI CASTG 1 cut(s) 1113
TseI GCWGC 2 cut(s) 5, 527
TspDTI ATGAA 4 cut(s) 290, 420, 1030, 1220
TspRI CASTG 1 cut(s) 1113
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 3 cut(s) 79, 218, 557
XapI RAATTY 5 cut(s) 166, 383, 740, 1118, 1252
XceI RCATGY 1 cut(s) 946
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmiI GTMKAC 3 cut(s) 63, 451, 519
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 2 cut(s) 41, 1274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.