Rh3AG214300

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000230
Physical Location & Seq
Forward (+)
21589835 .. 21591852
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG214300.1

Sequence Viewer

Length: 801 bp
ATGTTCGACCCGAGAAAATCCTCAACATATAGGAACATTACTTGTTCTGCAAGGGAGTGTGGACTTGTCGATGATCAAAAACCACCAGGCCAATCACCGGAGTTTTGTAAAAAATTTCCTACAAGAAGGTGTACTTACCGTGTCGAGTATGAAGACACGTCATCTTCTGAAGGTGTATTGGCAAAAGAAACAATTGCCTTGACATCCAGGACAGGTAAGGTTGTAACCATAAAAGATATTGTCATTGGGTGTGCACATTTGAACAATGAACATATTTCAACTGGAAATGAAATGGGAGTACTTGGGCTTGGAAATGGTCCTGTGTCATTTGTTTCTCAAATTGCTCCCTATGTTGGAGGGAACAGATTTTCTCATTGCTTGGTGCCTTTAGATACTGATCCCAAAATTGAAAGCAAGATCAATTTCGGAAATGGGAGTGAAGTTTTGGGTGAAGGGGCTGTCTCAACACCATTGGTTAATATAAATATAGCCCCATCTAACTATTTTGTAACGGTAGAAGGAGTTACCATTGGAAATGAATTTGTTCCGTTCAACTCAACAGTGACACAGCTTAATAAACTTAACATGATAGTCGACTCGGGCGCAACTTTTGCACAAGTACCTCAAGATATTTTTGATCGGATGGTAACTCAGCTGAAGAAGACGCTTGATCCGAAATTGGAGTCGTTTATTTTTAATGACACGGAAGATAATTCAAATTTTCTGTGTCTCAACTCGACGACAATTCCAAAAGAACCAAAAGTGACTTTTCATTTCGAGGGTGGTGGCAAACTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

266

Amino Acids

29.01

Weight (kDa)

5.47

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 1 - 144 4.2e-31 Xylanase inhibitor N-terminal
Asp PF00026 45 - 261 1.7e-08 Eukaryotic aspartyl protease
TAXi_C PF14541 167 - 264 1.3e-09 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 382
AccI GTMKAC 1 cut(s) 594
AclWI GGATC 2 cut(s) 392, 665
AcsI RAATTY 3 cut(s) 113, 539, 718
AcuI CTGAAG 2 cut(s) 189, 677
AfaI GTAC 3 cut(s) 133, 300, 621
AfiI CCNNNNNNNGG 2 cut(s) 97, 353
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 5 cut(s) 262, 279, 410, 553, 717
AjiI CACGTC 1 cut(s) 159
AjnI CCWGG 2 cut(s) 85, 206
AluBI AGCT 2 cut(s) 571, 655
AluI AGCT 2 cut(s) 571, 655
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 2 cut(s) 466, 734
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 2 cut(s) 392, 665
Ama87I CYCGRG 2 cut(s) 10, 598
AoxI GGCC 1 cut(s) 88
ApaLI GTGCAC 1 cut(s) 252
ApoI RAATTY 3 cut(s) 113, 539, 718
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 87, 461
AvaI CYCGRG 2 cut(s) 10, 598
AvaII GGWCC 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 382
BbsI GAAGAC 2 cut(s) 159, 668
Bbv12I GWGCWC 1 cut(s) 256
BccI CCATC 2 cut(s) 502, 637
BciT130I CCWGG 2 cut(s) 87, 208
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 466, 734
BmcAI AGTACT 1 cut(s) 300
Bme1390I CCNGG 2 cut(s) 87, 208
Bme18I GGWCC 1 cut(s) 317
BmeT110I CYCGRG 2 cut(s) 10, 598
BmgBI CACGTC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 2 cut(s) 87, 208
BpiI GAAGAC 2 cut(s) 159, 668
BpuEI CTTGAG 1 cut(s) 609
BsaBI GATNNNNATC 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 353
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 373
Bse8I GATNNNNATC 1 cut(s) 396
BseBI CCWGG 2 cut(s) 87, 208
BseGI GGATG 2 cut(s) 203, 648
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 2 cut(s) 97, 353
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 665
BseNI ACTGG 1 cut(s) 286
BseSI GKGCMC 1 cut(s) 256
BshFI GGCC 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 2 cut(s) 10, 598
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 97, 353
BsmAI GTCTC 2 cut(s) 466, 734
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 2 cut(s) 10, 598
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 5 cut(s) 73, 397, 417, 637, 670
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 384
BspPI GGATC 2 cut(s) 392, 665
BspT107I GGYRCC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 373
BsrI ACTGG 1 cut(s) 286
BssMI GATC 5 cut(s) 73, 397, 417, 637, 670
Bst2UI CCWGG 2 cut(s) 87, 208
Bst4CI ACNGT 3 cut(s) 140, 514, 562
BstAPI GCANNNNNTGC 1 cut(s) 611
BstDEI CTNAG 2 cut(s) 651, 794
BstF5I GGATG 2 cut(s) 203, 648
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 5 cut(s) 76, 400, 420, 640, 673
BstMAI GTCTC 2 cut(s) 466, 734
BstMBI GATC 5 cut(s) 73, 397, 417, 637, 670
BstMWI GCNNNNNNNGC 1 cut(s) 611
BstNI CCWGG 2 cut(s) 87, 208
BstSCI CCNGG 2 cut(s) 85, 206
BstSLI GKGCMC 1 cut(s) 256
BstV2I GAAGAC 2 cut(s) 159, 668
BsuRI GGCC 1 cut(s) 90
BtrI CACGTC 1 cut(s) 159
BtsCI GGATG 2 cut(s) 203, 648
BtsIMutI CAGTG 1 cut(s) 567
CfoI GCGC 1 cut(s) 605
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 1 cut(s) 673
Csp6I GTAC 3 cut(s) 132, 299, 620
CviAII CATG 1 cut(s) 586
CviJI RGCY 6 cut(s) 90, 307, 458, 491, 571, 655
CviKI_1 RGCY 6 cut(s) 90, 307, 458, 491, 571, 655
CviQI GTAC 3 cut(s) 132, 299, 620
DdeI CTNAG 2 cut(s) 651, 794
DpnI GATC 5 cut(s) 75, 399, 419, 639, 672
DpnII GATC 5 cut(s) 73, 397, 417, 637, 670
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 189, 677
Eco88I CYCGRG 2 cut(s) 10, 598
EcoRII CCWGG 2 cut(s) 85, 206
FaeI CATG 1 cut(s) 589
FaiI YATR 9 cut(s) 28, 30, 150, 230, 273, 351, 482, 488, 587
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FatI CATG 1 cut(s) 585
FbaI TGATCA 1 cut(s) 73
FblI GTMKAC 1 cut(s) 594
FokI GGATG 2 cut(s) 190, 655
GlaI GCGC 1 cut(s) 604
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 673
HhaI GCGC 1 cut(s) 605
Hin1II CATG 1 cut(s) 589
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HinfI GANTC 2 cut(s) 596, 683
HpaII CCGG 1 cut(s) 98
HphI GGTGA 2 cut(s) 87, 461
Hpy166II GTNNAC 4 cut(s) 62, 132, 254, 595
Hpy188I TCNGA 4 cut(s) 169, 428, 642, 675
Hpy188III TCNNGA 1 cut(s) 626
Hpy8I GTNNAC 4 cut(s) 62, 132, 254, 595
Hpy99I CGWCG 1 cut(s) 742
HpyAV CCTTC 4 cut(s) 120, 164, 446, 512
HpyCH4III ACNGT 3 cut(s) 140, 514, 562
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 3 cut(s) 50, 254, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 611
HpyF3I CTNAG 2 cut(s) 651, 794
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 1 cut(s) 589
HspAI GCGC 1 cut(s) 603
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 5 cut(s) 73, 397, 417, 637, 670
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 8 cut(s) 72, 99, 111, 193, 198, 220, 267, 333
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 6 cut(s) 223, 508, 523, 562, 646, 763
MalI GATC 5 cut(s) 75, 399, 419, 639, 672
MboI GATC 5 cut(s) 73, 397, 417, 637, 670
MboII GAAGA 5 cut(s) 156, 164, 670, 673, 719
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 256
MlyI GAGTC 2 cut(s) 590, 692
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 4 cut(s) 31, 350, 633, 772
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 5 cut(s) 477, 573, 582, 696, 799
MspA1I CMGCKG 1 cut(s) 655
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 2 cut(s) 87, 208
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 2 cut(s) 87, 208
MwoI GCNNNNNNNGC 1 cut(s) 611
NdeII GATC 5 cut(s) 73, 397, 417, 637, 670
NlaIII CATG 1 cut(s) 589
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 562, 763
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 543
PfoI TCCNGGA 1 cut(s) 206
PleI GAGTC 2 cut(s) 590, 691
PpsI GAGTC 2 cut(s) 590, 691
Psp6I CCWGG 2 cut(s) 85, 206
PspGI CCWGG 2 cut(s) 85, 206
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 3 cut(s) 133, 300, 621
RsaNI GTAC 3 cut(s) 132, 299, 620
SalI GTCGAC 1 cut(s) 593
SaqAI TTAA 5 cut(s) 477, 573, 582, 696, 799
Sau3AI GATC 5 cut(s) 73, 397, 417, 637, 670
Sau96I GGNCC 1 cut(s) 317
ScaI AGTACT 1 cut(s) 300
SchI GAGTC 2 cut(s) 590, 692
ScrFI CCNGG 2 cut(s) 87, 208
SduI GDGCHC 1 cut(s) 256
SetI ASST 8 cut(s) 131, 161, 175, 217, 222, 573, 625, 657
SinI GGWCC 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
StyD4I CCNGG 2 cut(s) 85, 206
TaaI ACNGT 3 cut(s) 140, 514, 562
TaiI ACGT 1 cut(s) 161
TaqI TCGA 6 cut(s) 6, 69, 144, 594, 737, 777
TatI WGTACW 2 cut(s) 131, 298
Tru1I TTAA 5 cut(s) 477, 573, 582, 696, 799
Tru9I TTAA 5 cut(s) 477, 573, 582, 696, 799
TscAI CASTG 1 cut(s) 567
TseFI GTSAC 2 cut(s) 562, 763
Tsp45I GTSAC 2 cut(s) 562, 763
TspDTI ATGAA 5 cut(s) 165, 282, 303, 552, 761
TspGWI ACGGA 2 cut(s) 537, 719
TspRI CASTG 1 cut(s) 567
VneI GTGCAC 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 3 cut(s) 113, 539, 718
XmiI GTMKAC 1 cut(s) 594
XmnI GAANNNNTTC 1 cut(s) 543
ZrmI AGTACT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.