Rroxscaffold_6G00403630

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000230
Physical Location & Seq
Reverse (-)
26113886 .. 26115603
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403630.1

Sequence Viewer

Length: 1071 bp
ATGGACCCAAGAAATAAGGCTTTACCCAATAAAACAACTGGTATAGAGTTCTTTCAGAAAAACATGACCCGGTTCATATTCCAGCAATGCAAGCCGTGTAAACGTTGCTACAACACTAAATATGCCATGTTCGACCCGAGAAAATCCACAACATATAGGAACATTACTTGTTCTGCAAGGGAGTGTGGACTTGTCGATGATCAAAAACCACCAGGCCAATCACCAGAGTTTTGTAAAAAATTTCCTACAAGGAGGTGTACTTACCGTGTCGAGTATGAAGACACGTCATCTTCTGAAGGTGTATTGGCAAAAGAAACAATTGCCTTGACATCCAGGACAGGTAAGGTTGTAACCCTAAAAGATATTGTCATTGGGTGTGCACATTTGAACAATGAACATATTTCAACTGGAAATGAAATGGGAGTACTTGGGCTTGGAAATGGTCCTGTGTCATTTGTTTCTCAAATTGCTCCCTATGTTGGAGGGAACAGATTTTCTCATTGCTTGGTGCCTTTAGATACTGATCCGAAAATTGAAAGCAAGATCAATTTCGGAAATGGGAGTGAAGTTTTGGGTGAAGGGGTTGTCTCAACACCATTGGTTAATATAAATATAGCCCCATCGAACTATTTTGTAACGGTAGAAGGAGTTACCATTGGAAATGAATTTGTTCCGTTCAACTCAACAGTGACACAGCTTAATAAGCTTAACATGATGGTCAACTCGGGCTCAACTTTTGCACAAGTACCTCGAGATATTTTTGATCGGATGGTAACTCAGCTGAAGAAGACGCTTGATCCGAAATTGGAGTCATTTATTTTTAATGACACGGAACATAATTCAAGTTTTTTGTGTCTCAACTCGACGACAATTCCAGAAGAACCAAAAGTCACTTTTCATTTCGAGGGTGGTGGCAAACTTCAGTTAATGGCAGAACAATTATTCAAAATAAACGAGAATAGAGTCTGCTTTGGAATCGTCCTCCACCCTGGGCAACACATGCCTTTCGGTATTTTTGGAGCCATTTTGCGGGGAAATTTGTTGGTTGGTTTTGACCTGGATAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

356

Amino Acids

39.59

Weight (kDa)

8.23

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 26 - 186 2.8e-35 Xylanase inhibitor N-terminal
Asp PF00026 87 - 355 3.3e-09 Eukaryotic aspartyl protease
TAXi_C PF14541 209 - 355 1.9e-15 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 508
AciI CCGC 1 cut(s) 1030
AclI AACGTT 1 cut(s) 103
AclWI GGATC 2 cut(s) 518, 791
AcsI RAATTY 3 cut(s) 239, 665, 1036
AcuI CTGAAG 3 cut(s) 315, 803, 905
AfaI GTAC 3 cut(s) 259, 426, 747
AfiI CCNNNNNNNGG 2 cut(s) 479, 1029
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 6 cut(s) 388, 405, 536, 679, 843, 946
AjiI CACGTC 1 cut(s) 285
AjnI CCWGG 4 cut(s) 211, 332, 988, 1056
AluBI AGCT 3 cut(s) 697, 706, 781
AluI AGCT 3 cut(s) 697, 706, 781
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 2 cut(s) 592, 860
Alw44I GTGCAC 1 cut(s) 378
AlwI GGATC 2 cut(s) 518, 791
Ama87I CYCGRG 3 cut(s) 136, 724, 750
AoxI GGCC 1 cut(s) 214
ApaLI GTGCAC 1 cut(s) 378
ApoI RAATTY 3 cut(s) 239, 665, 1036
ArsI GACNNNNNNTTYG 2 cut(s) 794, 826
Asp700I GAANNNNTTC 1 cut(s) 669
AspS9I GGNCC 2 cut(s) 4, 443
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 213, 587
AvaI CYCGRG 3 cut(s) 136, 724, 750
AvaII GGWCC 2 cut(s) 4, 443
BaeGI GKGCMC 1 cut(s) 382
BanI GGYRCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 731
BbsI GAAGAC 2 cut(s) 285, 794
Bbv12I GWGCWC 1 cut(s) 382
BccI CCATC 3 cut(s) 628, 709, 763
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 4 cut(s) 213, 334, 990, 1058
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 592, 860
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 5 cut(s) 70, 213, 334, 990, 1058
Bme18I GGWCC 2 cut(s) 4, 443
BmeT110I CYCGRG 3 cut(s) 136, 724, 750
BmgBI CACGTC 1 cut(s) 285
BmgT120I GGNCC 2 cut(s) 4, 443
BmiI GGNNCC 3 cut(s) 6, 510, 1021
BmrFI CCNGG 5 cut(s) 70, 213, 334, 990, 1058
BpiI GAAGAC 2 cut(s) 285, 794
BpuMI CCSGG 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 2 cut(s) 988, 989
Bsc4I CCNNNNNNNGG 2 cut(s) 479, 1029
Bse1I ACTGG 2 cut(s) 43, 412
Bse3DI GCAATG 2 cut(s) 92, 499
Bse8I GATNNNNATC 1 cut(s) 522
BseBI CCWGG 4 cut(s) 213, 334, 990, 1058
BseDI CCNNGG 2 cut(s) 988, 989
BseGI GGATG 2 cut(s) 329, 774
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 479, 1029
BseMI GCAATG 2 cut(s) 92, 499
BseMII CTCAG 1 cut(s) 791
BseNI ACTGG 2 cut(s) 43, 412
BseSI GKGCMC 1 cut(s) 382
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 508
BsiHKAI GWGCWC 1 cut(s) 382
BsiHKCI CYCGRG 3 cut(s) 136, 724, 750
BsiSI CCGG 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 479, 1029
BsmAI GTCTC 2 cut(s) 592, 860
BsnI GGCC 1 cut(s) 216
BsoBI CYCGRG 3 cut(s) 136, 724, 750
Bsp1286I GDGCHC 2 cut(s) 382, 731
Bsp143I GATC 5 cut(s) 199, 523, 543, 763, 796
BspACI CCGC 1 cut(s) 1030
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 790
BspLI GGNNCC 3 cut(s) 6, 510, 1021
BspPI GGATC 2 cut(s) 518, 791
BspT107I GGYRCC 1 cut(s) 508
BsrDI GCAATG 2 cut(s) 92, 499
BsrI ACTGG 2 cut(s) 43, 412
BssECI CCNNGG 2 cut(s) 988, 989
BssMI GATC 5 cut(s) 199, 523, 543, 763, 796
Bst2UI CCWGG 4 cut(s) 213, 334, 990, 1058
Bst4CI ACNGT 3 cut(s) 266, 640, 688
BstAPI GCANNNNNTGC 1 cut(s) 1000
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 777
BstF5I GGATG 2 cut(s) 329, 774
BstKTI GATC 5 cut(s) 202, 526, 546, 766, 799
BstMAI GTCTC 2 cut(s) 592, 860
BstMBI GATC 5 cut(s) 199, 523, 543, 763, 796
BstMWI GCNNNNNNNGC 3 cut(s) 91, 703, 1000
BstNI CCWGG 4 cut(s) 213, 334, 990, 1058
BstNSI RCATGY 1 cut(s) 1003
BstSCI CCNGG 5 cut(s) 68, 211, 332, 988, 1056
BstSLI GKGCMC 1 cut(s) 382
BstV2I GAAGAC 2 cut(s) 285, 794
BsuRI GGCC 1 cut(s) 216
BtrI CACGTC 1 cut(s) 285
BtsCI GGATG 2 cut(s) 329, 774
BtsIMutI CAGTG 1 cut(s) 693
Cac8I GCNNGC 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 4, 443
CseI GACGC 1 cut(s) 799
Csp6I GTAC 3 cut(s) 258, 425, 746
CviAII CATG 4 cut(s) 64, 127, 712, 1000
CviQI GTAC 3 cut(s) 258, 425, 746
DdeI CTNAG 1 cut(s) 777
DpnI GATC 5 cut(s) 201, 525, 545, 765, 798
DpnII GATC 5 cut(s) 199, 523, 543, 763, 796
Eco24I GRGCYC 1 cut(s) 731
Eco47I GGWCC 2 cut(s) 4, 443
Eco57I CTGAAG 3 cut(s) 315, 803, 905
Eco88I CYCGRG 3 cut(s) 136, 724, 750
EcoRII CCWGG 4 cut(s) 211, 332, 988, 1056
EcoT38I GRGCYC 1 cut(s) 731
FaeI CATG 4 cut(s) 67, 130, 715, 1003
FatI CATG 4 cut(s) 63, 126, 711, 999
FauI CCCGC 1 cut(s) 1023
FbaI TGATCA 1 cut(s) 199
FokI GGATG 2 cut(s) 316, 781
FriOI GRGCYC 1 cut(s) 731
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 799
Hin1II CATG 4 cut(s) 67, 130, 715, 1003
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HindIII AAGCTT 1 cut(s) 704
HinfI GANTC 3 cut(s) 809, 963, 975
HpaII CCGG 1 cut(s) 70
HphI GGTGA 2 cut(s) 213, 587
Hpy166II GTNNAC 5 cut(s) 101, 188, 258, 380, 721
Hpy188I TCNGA 6 cut(s) 57, 295, 528, 554, 768, 801
Hpy188III TCNNGA 2 cut(s) 752, 875
Hpy8I GTNNAC 5 cut(s) 101, 188, 258, 380, 721
Hpy99I CGWCG 1 cut(s) 868
HpyAV CCTTC 3 cut(s) 290, 572, 638
HpyCH4III ACNGT 3 cut(s) 266, 640, 688
HpyCH4IV ACGT 2 cut(s) 103, 284
HpyCH4V TGCA 4 cut(s) 90, 176, 380, 740
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 703, 1000
HpyF3I CTNAG 1 cut(s) 777
HpySE526I ACGT 2 cut(s) 103, 284
Hsp92II CATG 4 cut(s) 67, 130, 715, 1003
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 5 cut(s) 199, 523, 543, 763, 796
LmnI GCTCC 2 cut(s) 475, 1019
MaeII ACGT 2 cut(s) 103, 284
MaeIII GTNAC 6 cut(s) 349, 634, 649, 688, 772, 889
MalI GATC 5 cut(s) 201, 525, 545, 765, 798
MboI GATC 5 cut(s) 199, 523, 543, 763, 796
MboII GAAGA 5 cut(s) 282, 290, 796, 799, 890
MfeI CAATTG 1 cut(s) 318
MhlI GDGCHC 2 cut(s) 382, 731
MlyI GAGTC 2 cut(s) 818, 972
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 5 cut(s) 246, 476, 759, 898, 992
MroXI GAANNNNTTC 1 cut(s) 669
MseI TTAA 6 cut(s) 603, 699, 708, 822, 926, 1069
MspA1I CMGCKG 1 cut(s) 781
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 5 cut(s) 70, 213, 334, 990, 1058
MunI CAATTG 1 cut(s) 318
MvaI CCWGG 4 cut(s) 213, 334, 990, 1058
MwoI GCNNNNNNNGC 3 cut(s) 91, 703, 1000
NciI CCSGG 1 cut(s) 70
NdeII GATC 5 cut(s) 199, 523, 543, 763, 796
NlaIII CATG 4 cut(s) 67, 130, 715, 1003
NlaIV GGNNCC 3 cut(s) 6, 510, 1021
NmuCI GTSAC 2 cut(s) 688, 889
NspI RCATGY 1 cut(s) 1003
PaeR7I CTCGAG 1 cut(s) 750
PasI CCCWGGG 1 cut(s) 989
PcsI WCGNNNNNNNCGW 1 cut(s) 797
PdmI GAANNNNTTC 1 cut(s) 669
PfeI GAWTC 1 cut(s) 975
PfoI TCCNGGA 1 cut(s) 332
PleI GAGTC 2 cut(s) 817, 971
PpsI GAGTC 2 cut(s) 817, 971
Psp1406I AACGTT 1 cut(s) 103
Psp6I CCWGG 4 cut(s) 211, 332, 988, 1056
PspGI CCWGG 4 cut(s) 211, 332, 988, 1056
PspN4I GGNNCC 3 cut(s) 6, 510, 1021
PspPI GGNCC 2 cut(s) 4, 443
PvuII CAGCTG 1 cut(s) 781
RsaI GTAC 3 cut(s) 259, 426, 747
RsaNI GTAC 3 cut(s) 258, 425, 746
SaqAI TTAA 6 cut(s) 603, 699, 708, 822, 926, 1069
Sau3AI GATC 5 cut(s) 199, 523, 543, 763, 796
Sau96I GGNCC 2 cut(s) 4, 443
ScaI AGTACT 1 cut(s) 426
SchI GAGTC 2 cut(s) 818, 972
ScrFI CCNGG 5 cut(s) 70, 213, 334, 990, 1058
SduI GDGCHC 2 cut(s) 382, 731
Sfr274I CTCGAG 1 cut(s) 750
SinI GGWCC 2 cut(s) 4, 443
SlaI CTCGAG 1 cut(s) 750
SmlI CTYRAG 1 cut(s) 750
SmoI CTYRAG 1 cut(s) 750
SsiI CCGC 1 cut(s) 1030
StyD4I CCNGG 5 cut(s) 68, 211, 332, 988, 1056
TaaI ACNGT 3 cut(s) 266, 640, 688
TaiI ACGT 2 cut(s) 106, 287
TaqI TCGA 7 cut(s) 132, 195, 270, 623, 751, 863, 903
TatI WGTACW 2 cut(s) 257, 424
TfiI GAWTC 1 cut(s) 975
Tru1I TTAA 6 cut(s) 603, 699, 708, 822, 926, 1069
Tru9I TTAA 6 cut(s) 603, 699, 708, 822, 926, 1069
TscAI CASTG 1 cut(s) 693
TseFI GTSAC 2 cut(s) 688, 889
Tsp45I GTSAC 2 cut(s) 688, 889
TspDTI ATGAA 6 cut(s) 64, 291, 408, 429, 678, 887
TspGWI ACGGA 2 cut(s) 663, 845
TspRI CASTG 1 cut(s) 693
VneI GTGCAC 1 cut(s) 378
VpaK11BI GGWCC 2 cut(s) 4, 443
XapI RAATTY 3 cut(s) 239, 665, 1036
XceI RCATGY 1 cut(s) 1003
XhoI CTCGAG 1 cut(s) 750
XmnI GAANNNNTTC 1 cut(s) 669
ZrmI AGTACT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.