Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000230

Physical Location & Seq

Genomic Coordinates Reverse (-)

19333843 .. 19334499

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG214100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGACGCCATATCATTCACTCTCCGCCATTGCAAGTTCTATTGTTATTCTCTTTCTCTTAGTTCGCTCTAATGCACAAGATAATGTTCCTCACCATGGCGGTGTTATTAGCCTCAACATGATCCATCGTGACACACCATCTTCTCCCTTATACAATTCGTCGTTAACTAATTGGCAACGAGTAAGCAATGCTTTGCGACGTTCACGTGATCGCATCAACCGTTTCACCTCATCAGAAGATGAATCGCCTGATCATCTAATGTACAGCGAAGGAGATTACCTGGTGAACATATCAATCGGTACACCACCAAGACCTTTCATTGGAATTGTTGACACCGGAAGCGATCTTATATGGACACAATGCATGCCATGCAGGCAATGTTTCGAGCAAAACCCTCCTCTCTTTGATCCAGCTTCTTCATCAACTTACAGAGCTCTTTCGTGTATGTCCAACGAATGTCGTTTGCTAAGACCAGCCTCCTTTTGTTCCAGTAATTCAAGCTCTTGTGACTATCAATATTCATATGTCGACGGGTCTAATAACACAGGAAACCTGTCCCTCGACAGTCGACACTGTTACGTTGGGTTCCACATCCATTCCCAAAACTATATTTGGTTGTGGACACCAAAATGGAGGAGATTTCAGTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

218

Amino Acids

24.84

Weight (kDa)

6.69

Isoelectric Point (pI)

62.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	94 - 190	3.3e-29	Xylanase inhibitor N-terminal
Asp	PF00026	94 - 147	1.6e-07	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica	MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica	Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis	pycom12g22170
rosa_chinensis	RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata	RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora	Rmu_sc0034928.1_g000007
rosa_roxburghii	Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa	Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha	Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana	Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	531, 571
AciI	CCGC	2 cut(s)	27, 102
AclWI	GGATC	2 cut(s)	118, 404
AcvI	CACGTG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	2 cut(s)	266, 304
AfiI	CCNNNNNNNGG	2 cut(s)	98, 323
AgsI	TTSAA	1 cut(s)	501
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	3 cut(s)	416, 437, 504
AluI	AGCT	3 cut(s)	416, 437, 504
Alw21I	GWGCWC	1 cut(s)	439
AlwI	GGATC	2 cut(s)	118, 404
AsuHPI	GGTGA	3 cut(s)	86, 220, 298
BanII	GRGCYC	1 cut(s)	439
BbrPI	CACGTG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	439
BccI	CCATC	2 cut(s)	135, 148
BciT130I	CCWGG	1 cut(s)	284
BclI	TGATCA	1 cut(s)	253
BglI	GCCNNNNNGGC	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	590
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	97
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 323
Bse1I	ACTGG	1 cut(s)	492
Bse3DI	GCAATG	3 cut(s)	30, 196, 386
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	594
BseLI	CCNNNNNNNGG	2 cut(s)	98, 323
BseMI	GCAATG	3 cut(s)	30, 196, 386
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	2 cut(s)	390, 652
BsiHKAI	GWGCWC	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	98, 323
BsmFI	GGGAC	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	5 cut(s)	123, 211, 253, 346, 409
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	2 cut(s)	27, 102
BspLI	GGNNCC	1 cut(s)	590
BspPI	GGATC	2 cut(s)	118, 404
BsrDI	GCAATG	3 cut(s)	30, 196, 386
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	492
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	5 cut(s)	123, 211, 253, 346, 409
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	224, 569, 578
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	372
BstAUI	TGTACA	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	368, 377
BstDEI	CTNAG	2 cut(s)	61, 470
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	594
BstKTI	GATC	5 cut(s)	126, 214, 256, 349, 412
BstMBI	GATC	5 cut(s)	123, 211, 253, 346, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 376
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	594
BtsIMutI	CAGTG	2 cut(s)	574, 653
Cac8I	GCNNGC	2 cut(s)	368, 377
CseI	GACGC	1 cut(s)	16
CsiI	ACCWGGT	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	265, 303
CviAII	CATG	4 cut(s)	98, 121, 367, 372
CviJI	RGCY	5 cut(s)	114, 416, 437, 479, 504
CviKI_1	RGCY	5 cut(s)	114, 416, 437, 479, 504
CviQI	GTAC	2 cut(s)	265, 303
DdeI	CTNAG	2 cut(s)	61, 470
DpnI	GATC	5 cut(s)	125, 213, 255, 348, 411
DpnII	GATC	5 cut(s)	123, 211, 253, 346, 409
EciI	GGCGGA	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	437
Eco72I	CACGTG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	4 cut(s)	101, 124, 370, 375
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	4 cut(s)	97, 120, 366, 371
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	253
FblI	GTMKAC	2 cut(s)	531, 571
FokI	GGATG	1 cut(s)	581
FriOI	GRGCYC	1 cut(s)	439
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	4 cut(s)	101, 124, 370, 375
HincII	GTYRAC	4 cut(s)	168, 334, 532, 572
HindII	GTYRAC	4 cut(s)	168, 334, 532, 572
HinfI	GANTC	1 cut(s)	245
HpaI	GTTAAC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	3 cut(s)	86, 220, 298
Hpy166II	GTNNAC	8 cut(s)	168, 206, 289, 305, 334, 532, 572, 624
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	8 cut(s)	168, 206, 289, 305, 334, 532, 572, 624
Hpy99I	CGWCG	4 cut(s)	10, 166, 204, 536
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	3 cut(s)	224, 569, 578
HpyCH4IV	ACGT	3 cut(s)	202, 208, 582
HpyCH4V	TGCA	4 cut(s)	35, 77, 366, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 376
HpyF3I	CTNAG	2 cut(s)	61, 470
HpySE526I	ACGT	3 cut(s)	202, 208, 582
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	4 cut(s)	101, 124, 370, 375
Ksp22I	TGATCA	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	168
Kzo9I	GATC	5 cut(s)	123, 211, 253, 346, 409
LweI	GCATC	1 cut(s)	225
MabI	ACCWGGT	1 cut(s)	282
MaeII	ACGT	3 cut(s)	202, 208, 582
MaeIII	GTNAC	3 cut(s)	131, 509, 578
MalI	GATC	5 cut(s)	125, 213, 255, 348, 411
MboI	GATC	5 cut(s)	123, 211, 253, 346, 409
MboII	GAAGA	3 cut(s)	135, 251, 411
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	4 cut(s)	157, 172, 327, 496
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	8 cut(s)	102, 125, 241, 408, 411, 490, 572, 630
Mph1103I	ATGCAT	1 cut(s)	368
MseI	TTAA	1 cut(s)	167
MslI	CAYNNNNRTG	2 cut(s)	102, 631
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	2 cut(s)	372, 376
NcoI	CCATGG	1 cut(s)	97
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	5 cut(s)	123, 211, 253, 346, 409
NlaIII	CATG	4 cut(s)	101, 124, 370, 375
NlaIV	GGNNCC	1 cut(s)	590
NmuCI	GTSAC	2 cut(s)	131, 509
NsiI	ATGCAT	1 cut(s)	368
NspI	RCATGY	1 cut(s)	370
PaeI	GCATGC	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	245
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	282
PspCI	CACGTG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	590
RsaI	GTAC	2 cut(s)	266, 304
RsaNI	GTAC	2 cut(s)	265, 303
RseI	CAYNNNNRTG	2 cut(s)	102, 631
SacI	GAGCTC	1 cut(s)	439
SalI	GTCGAC	2 cut(s)	530, 570
SaqAI	TTAA	1 cut(s)	167
Sau3AI	GATC	5 cut(s)	123, 211, 253, 346, 409
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	439
SexAI	ACCWGGT	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	102, 631
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	4 cut(s)	157, 172, 327, 496
SsiI	CCGC	2 cut(s)	27, 102
SspI	AATATT	1 cut(s)	521
SstI	GAGCTC	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	224, 569, 578
TaiI	ACGT	3 cut(s)	205, 211, 585
TaqI	TCGA	4 cut(s)	387, 531, 564, 571
TasI	AATT	4 cut(s)	157, 172, 327, 496
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	2 cut(s)	581, 653
TseFI	GTSAC	2 cut(s)	131, 509
Tsp45I	GTSAC	2 cut(s)	131, 509
TspDTI	ATGAA	4 cut(s)	258, 310, 411, 513
TspRI	CASTG	2 cut(s)	581, 653
XceI	RCATGY	1 cut(s)	370
XmiI	GTMKAC	2 cut(s)	531, 571
Zsp2I	ATGCAT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.